Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

60916265 .. 60916825

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGCCTGGATGAGCTTCCCAAAAATGAAAACGCAAAATCCACTACCACGCAGAAAGACAACATCCCCAAGAAACCAAGAGAAAGGGGAGCTGCAATAGGGCACACAATGCAGGAAAGCAGTAAGATTGCTGGCGTTAAGACCAAAGATGGTGAGAATCTGGTATCCACAAGTAGACAGAAAGTGGTAGAAGGCAATAAGAATCCATTGATGCAGAAAAACACTGCTTTTCTTCTGCAAGCAGAAAAGGTCCTGCCTGCCAACAACAATGTTGGCCTTGAGATGGTTATTCATGATGGAAAACAATCCTCAAAAGACTTGATGGGAATAAAACCTGTGACAAGATCAGGAAAGACAACCACCATGAAAACAGATAAGCAGCAAAGTGCCCAATTCAGACAGAACGGCAGTAAGGATAATCATGAAAAAGAAAGAAAGCAGGATACTATGAGGTCTGGGGAACAAAAGTTGCAGGTAAGAAAACAACAAGGTACTGAGATGGTATCCAAGAGTACATCCAACAGGCAGCAAAGCAGCCTCACACAAGCCAAGCCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

186

Amino Acids

20.57

Weight (kDa)

10.03

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	493, 514
AfiI	CCNNNNNNNGG	2 cut(s)	283, 555
AjnI	CCWGG	2 cut(s)	6, 553
AluBI	AGCT	2 cut(s)	16, 92
AluI	AGCT	2 cut(s)	16, 92
AoxI	GGCC	2 cut(s)	4, 274
ApeKI	GCWGC	4 cut(s)	92, 379, 526, 534
AspS9I	GGNCC	2 cut(s)	4, 250
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	2 cut(s)	105, 391
BbvI	GCAGC	4 cut(s)	79, 391, 538, 546
BccI	CCATC	5 cut(s)	143, 277, 290, 316, 493
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	2 cut(s)	8, 555
BciVI	GTATCC	3 cut(s)	175, 436, 514
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	3 cut(s)	175, 436, 514
BisI	GCNGC	4 cut(s)	93, 380, 527, 535
BlsI	GCNGC	4 cut(s)	94, 381, 528, 536
Bme1390I	CCNGG	2 cut(s)	8, 555
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	4, 250
BmrFI	CCNGG	2 cut(s)	8, 555
BmsI	GCATC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 555
BseBI	CCWGG	2 cut(s)	8, 555
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	3 cut(s)	16, 63, 515
BseLI	CCNNNNNNNGG	2 cut(s)	283, 555
BseMII	CTCAG	1 cut(s)	486
BseSI	GKGCMC	2 cut(s)	105, 391
BseXI	GCAGC	4 cut(s)	79, 391, 538, 546
BshFI	GGCC	2 cut(s)	6, 276
BslI	CCNNNNNNNGG	2 cut(s)	283, 555
BsnI	GGCC	2 cut(s)	6, 276
Bsp1286I	GDGCHC	2 cut(s)	105, 391
Bsp143I	GATC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	6, 276
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	2 cut(s)	292, 421
BspMI	ACCTGC	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	8, 555
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	133, 240, 258
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	16, 63, 515
BstKTI	GATC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	8, 555
BstSCI	CCNGG	2 cut(s)	6, 553
BstSLI	GKGCMC	2 cut(s)	105, 391
BstV1I	GCAGC	4 cut(s)	79, 391, 538, 546
BsuI	GTATCC	3 cut(s)	175, 436, 514
BsuRI	GGCC	2 cut(s)	6, 276
BtsCI	GGATG	3 cut(s)	16, 63, 515
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	133, 240, 258
CciI	TCATGA	2 cut(s)	292, 421
Cfr13I	GGNCC	2 cut(s)	4, 250
Csp6I	GTAC	2 cut(s)	492, 513
CviAII	CATG	3 cut(s)	293, 364, 422
CviJI	RGCY	7 cut(s)	6, 16, 92, 276, 537, 548, 553
CviKI_1	RGCY	7 cut(s)	6, 16, 92, 276, 537, 548, 553
CviQI	GTAC	2 cut(s)	492, 513
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	6, 553
FaeI	CATG	3 cut(s)	296, 367, 425
FaiI	YATR	4 cut(s)	294, 365, 423, 449
FatI	CATG	3 cut(s)	292, 363, 421
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	93, 380, 527, 535
FokI	GGATG	3 cut(s)	23, 50, 502
Fsp4HI	GCNGC	4 cut(s)	93, 380, 527, 535
GluI	GCNGC	4 cut(s)	93, 380, 527, 535
HaeIII	GGCC	2 cut(s)	6, 276
Hin1II	CATG	3 cut(s)	296, 367, 425
HinfI	GANTC	2 cut(s)	157, 202
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	3 cut(s)	293, 348, 422
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	95, 112, 214, 238, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	296, 367, 425
Kzo9I	GATC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	4 cut(s)	79, 391, 538, 546
LweI	GCATC	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	105, 391
MluCI	AATT	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	3 cut(s)	319, 444, 548
MseI	TTAA	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	8, 555
MvaI	CCWGG	2 cut(s)	8, 555
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	3 cut(s)	296, 367, 425
NmuCI	GTSAC	1 cut(s)	337
PagI	TCATGA	2 cut(s)	292, 421
PfeI	GAWTC	2 cut(s)	157, 202
PkrI	GCNGC	4 cut(s)	94, 381, 528, 536
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	6, 553
PspGI	CCWGG	2 cut(s)	6, 553
PspPI	GGNCC	2 cut(s)	4, 250
PspPPI	RGGWCCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	493, 514
RsaNI	GTAC	2 cut(s)	492, 513
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	4 cut(s)	93, 380, 527, 535
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	2 cut(s)	4, 250
ScrFI	CCNGG	2 cut(s)	8, 555
SduI	GDGCHC	2 cut(s)	105, 391
SetI	ASST	7 cut(s)	18, 94, 252, 337, 455, 477, 493
SfaNI	GCATC	1 cut(s)	201
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	6, 553
TasI	AATT	1 cut(s)	392
TatI	WGTACW	1 cut(s)	512
TfiI	GAWTC	2 cut(s)	157, 202
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	92, 379, 526, 534
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	42, 281, 380, 438
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.