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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42710 AT5G42710 AT5G42710 |
| fragaria_vesca | FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 |
| malus_domestica | MD08G1035200.v1.1 MD15G1031800.v1.1 |
| prunus_persica | Prupe.1G380200_v2.0.a1 |
| pyrus_communis | pycom08g02780 pycom15g02750 |
| rosa_chinensis | RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941 |
| rosa_laevigata | RLG00000011289 RLG00000034832 RLG00000034833 |
| rosa_multiflora | Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00028100 Rroxscaffold_7G00167300 |
| rosa_rugosa | Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700 |
| rosa_samantha | Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300 |
| rosa_wichuraiana | Rw5G032650 Rw5G032690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2975 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 740 |
| Acc36I | ACCTGC | 2 cut(s) | 657, 2145 |
| AccB1I | GGYRCC | 1 cut(s) | 1802 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1569 |
| AccI | GTMKAC | 1 cut(s) | 3012 |
| AccII | CGCG | 1 cut(s) | 48 |
| AciI | CCGC | 6 cut(s) | 858, 1092, 2293, 2530, 2673, 3003 |
| AclWI | GGATC | 5 cut(s) | 399, 412, 704, 777, 2015 |
| AcoI | YGGCCR | 3 cut(s) | 102, 1821, 2122 |
| AcsI | RAATTY | 4 cut(s) | 572, 1547, 1849, 1906 |
| AcuI | CTGAAG | 5 cut(s) | 400, 645, 900, 2555, 2874 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1318, 1376, 1569, 1735, 2387 |
| AhlI | ACTAGT | 1 cut(s) | 1262 |
| AjnI | CCWGG | 3 cut(s) | 961, 1381, 1999 |
| Alw21I | GWGCWC | 7 cut(s) | 83, 281, 1630, 2405, 2478, 2715, 3000 |
| Alw26I | GTCTC | 4 cut(s) | 1108, 1574, 1930, 3021 |
| Alw44I | GTGCAC | 2 cut(s) | 1626, 2401 |
| AlwI | GGATC | 5 cut(s) | 399, 412, 704, 777, 2015 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| Ama87I | CYCGRG | 1 cut(s) | 323 |
| AoxI | GGCC | 7 cut(s) | 102, 306, 838, 1821, 1885, 2057, 2122 |
| ApaLI | GTGCAC | 2 cut(s) | 1626, 2401 |
| ApoI | RAATTY | 4 cut(s) | 572, 1547, 1849, 1906 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2065, 2097 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 352, 1023, 1834, 2486 |
| AspLEI | GCGC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 7 cut(s) | 838, 1361, 1379, 1500, 1886, 2411, 2935 |
| AsuC2I | CCSGG | 1 cut(s) | 1133 |
| AsuHPI | GGTGA | 4 cut(s) | 865, 1147, 1621, 1911 |
| AsuII | TTCGAA | 1 cut(s) | 2805 |
| AvaI | CYCGRG | 1 cut(s) | 323 |
| AvaII | GGWCC | 5 cut(s) | 1361, 1379, 1500, 2411, 2935 |
| BaeGI | GKGCMC | 3 cut(s) | 520, 1630, 2405 |
| BalI | TGGCCA | 3 cut(s) | 104, 1823, 2124 |
| BamHI | GGATCC | 1 cut(s) | 404 |
| BanI | GGYRCC | 1 cut(s) | 1802 |
| BanII | GRGCYC | 3 cut(s) | 83, 281, 2715 |
| BbsI | GAAGAC | 2 cut(s) | 738, 2445 |
| Bbv12I | GWGCWC | 7 cut(s) | 83, 281, 1630, 2405, 2478, 2715, 3000 |
| BccI | CCATC | 3 cut(s) | 1325, 1567, 2224 |
| BceAI | ACGGC | 1 cut(s) | 1748 |
| BciT130I | CCWGG | 3 cut(s) | 963, 1383, 2001 |
| BciVI | GTATCC | 1 cut(s) | 1254 |
| BcnI | CCSGG | 1 cut(s) | 1133 |
| BcoDI | GTCTC | 4 cut(s) | 1108, 1574, 1930, 3021 |
| BcuI | ACTAGT | 1 cut(s) | 1262 |
| BfaI | CTAG | 6 cut(s) | 360, 707, 1263, 1734, 1974, 2117 |
| BfmI | CTRYAG | 3 cut(s) | 650, 955, 1773 |
| BfuAI | ACCTGC | 2 cut(s) | 657, 2145 |
| BfuI | GTATCC | 1 cut(s) | 1254 |
| BglII | AGATCT | 1 cut(s) | 295 |
| BlpI | GCTNAGC | 3 cut(s) | 753, 2250, 2999 |
| Bme1390I | CCNGG | 4 cut(s) | 963, 1133, 1383, 2001 |
| Bme18I | GGWCC | 5 cut(s) | 1361, 1379, 1500, 2411, 2935 |
| BmeT110I | CYCGRG | 1 cut(s) | 323 |
| BmgT120I | GGNCC | 7 cut(s) | 838, 1361, 1379, 1500, 1886, 2411, 2935 |
| BmiI | GGNNCC | 8 cut(s) | 191, 406, 610, 1501, 1804, 2431, 2901, 2936 |
| BmrFI | CCNGG | 4 cut(s) | 963, 1133, 1383, 2001 |
| BmrI | ACTGGG | 2 cut(s) | 195, 463 |
| BmsI | GCATC | 4 cut(s) | 100, 1214, 1473, 2187 |
| BmuI | ACTGGG | 2 cut(s) | 195, 463 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2334, 2625 |
| BpiI | GAAGAC | 2 cut(s) | 738, 2445 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 324, 356 |
| BpmI | CTGGAG | 3 cut(s) | 1090, 1194, 2515 |
| Bpu10I | CCTNAGC | 1 cut(s) | 280 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 753, 2250, 2999 |
| Bpu14I | TTCGAA | 1 cut(s) | 2805 |
| BpuEI | CTTGAG | 4 cut(s) | 163, 652, 784, 827 |
| BpuMI | CCSGG | 1 cut(s) | 1133 |
| BsaI | GGTCTC | 2 cut(s) | 1930, 3021 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1318, 1376, 1569, 1735, 2387 |
| BseBI | CCWGG | 3 cut(s) | 963, 1383, 2001 |
| BseGI | GGATG | 7 cut(s) | 43, 730, 1559, 2458, 2722, 2754, 2779 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1318, 1376, 1569, 1735, 2387 |
| BseMII | CTCAG | 8 cut(s) | 89, 294, 744, 950, 1833, 2241, 2358, 3013 |
| BseRI | GAGGAG | 2 cut(s) | 1617, 1946 |
| BseSI | GKGCMC | 3 cut(s) | 520, 1630, 2405 |
| BseYI | CCCAGC | 1 cut(s) | 376 |
| BsgI | GTGCAG | 1 cut(s) | 54 |
| Bsh1236I | CGCG | 1 cut(s) | 48 |
| Bsh1285I | CGRYCG | 1 cut(s) | 14 |
| BshFI | GGCC | 7 cut(s) | 104, 308, 840, 1823, 1887, 2059, 2124 |
| BshNI | GGYRCC | 1 cut(s) | 1802 |
| BsiEI | CGRYCG | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 7 cut(s) | 83, 281, 1630, 2405, 2478, 2715, 3000 |
| BsiHKCI | CYCGRG | 1 cut(s) | 323 |
| BsiSI | CCGG | 1 cut(s) | 1132 |
| BslFI | GGGAC | 3 cut(s) | 1467, 2936, 2948 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1318, 1376, 1569, 1735, 2387 |
| BsmAI | GTCTC | 4 cut(s) | 1108, 1574, 1930, 3021 |
| BsmFI | GGGAC | 3 cut(s) | 1467, 2936, 2948 |
| BsmI | GAATGC | 4 cut(s) | 642, 2208, 2294, 2610 |
| BsnI | GGCC | 7 cut(s) | 104, 308, 840, 1823, 1887, 2059, 2124 |
| Bso31I | GGTCTC | 2 cut(s) | 1930, 3021 |
| BsoBI | CYCGRG | 1 cut(s) | 323 |
| Bsp119I | TTCGAA | 1 cut(s) | 2805 |
| Bsp1286I | GDGCHC | 8 cut(s) | 83, 281, 520, 1630, 2405, 2478, 2715, 3000 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 753, 2250, 2999 |
| Bsp19I | CCATGG | 3 cut(s) | 303, 612, 1343 |
| BspACI | CCGC | 6 cut(s) | 858, 1092, 2293, 2530, 2673, 3003 |
| BspANI | GGCC | 7 cut(s) | 104, 308, 840, 1823, 1887, 2059, 2124 |
| BspCNI | CTCAG | 8 cut(s) | 88, 293, 745, 949, 1834, 2242, 2357, 3012 |
| BspFNI | CGCG | 1 cut(s) | 48 |
| BspHI | TCATGA | 4 cut(s) | 600, 1327, 1543, 2617 |
| BspLI | GGNNCC | 8 cut(s) | 191, 406, 610, 1501, 1804, 2431, 2901, 2936 |
| BspMAI | CTGCAG | 2 cut(s) | 654, 1777 |
| BspMI | ACCTGC | 2 cut(s) | 657, 2145 |
| BspPI | GGATC | 5 cut(s) | 399, 412, 704, 777, 2015 |
| BspT104I | TTCGAA | 1 cut(s) | 2805 |
| BspT107I | GGYRCC | 1 cut(s) | 1802 |
| BspTNI | GGTCTC | 2 cut(s) | 1930, 3021 |
| BssT1I | CCWWGG | 8 cut(s) | 303, 309, 612, 776, 1343, 1503, 1882, 2769 |
| Bst2UI | CCWGG | 3 cut(s) | 963, 1383, 2001 |
| Bst4CI | ACNGT | 6 cut(s) | 89, 742, 1463, 2562, 2624, 2766 |
| Bst6I | CTCTTC | 4 cut(s) | 139, 618, 1972, 2850 |
| BstBI | TTCGAA | 1 cut(s) | 2805 |
| BstC8I | GCNNGC | 5 cut(s) | 547, 1278, 2166, 2256, 2657 |
| BstDSI | CCRYGG | 3 cut(s) | 303, 612, 1343 |
| BstEII | GGTNACC | 1 cut(s) | 853 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1374 |
| BstF5I | GGATG | 7 cut(s) | 43, 730, 1559, 2458, 2722, 2754, 2779 |
| BstFNI | CGCG | 1 cut(s) | 48 |
| BstHHI | GCGC | 1 cut(s) | 48 |
| BstMAI | GTCTC | 4 cut(s) | 1108, 1574, 1930, 3021 |
| BstMCI | CGRYCG | 1 cut(s) | 14 |
| BstNI | CCWGG | 3 cut(s) | 963, 1383, 2001 |
| BstNSI | RCATGY | 1 cut(s) | 549 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2334, 2625 |
| BstPI | GGTNACC | 1 cut(s) | 853 |
| BstSCI | CCNGG | 4 cut(s) | 961, 1131, 1381, 1999 |
| BstSFI | CTRYAG | 3 cut(s) | 650, 955, 1773 |
| BstSLI | GKGCMC | 3 cut(s) | 520, 1630, 2405 |
| BstUI | CGCG | 1 cut(s) | 48 |
| BstV2I | GAAGAC | 2 cut(s) | 738, 2445 |
| BstX2I | RGATCY | 3 cut(s) | 295, 404, 769 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 310, 619 |
| BstYI | RGATCY | 3 cut(s) | 295, 404, 769 |
| BsuI | GTATCC | 1 cut(s) | 1254 |
| BsuRI | GGCC | 7 cut(s) | 104, 308, 840, 1823, 1887, 2059, 2124 |
| BtgI | CCRYGG | 3 cut(s) | 303, 612, 1343 |
| BtsCI | GGATG | 7 cut(s) | 43, 730, 1559, 2458, 2722, 2754, 2779 |
| BtsI | GCAGTG | 1 cut(s) | 1782 |
| BtsIMutI | CAGTG | 4 cut(s) | 738, 1782, 2469, 2629 |
| BveI | ACCTGC | 2 cut(s) | 657, 2145 |
| Cac8I | GCNNGC | 5 cut(s) | 547, 1278, 2166, 2256, 2657 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CciI | TCATGA | 4 cut(s) | 600, 1327, 1543, 2617 |
| CfoI | GCGC | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 7 cut(s) | 838, 1361, 1379, 1500, 1886, 2411, 2935 |
| CseI | GACGC | 1 cut(s) | 37 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 740 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 740 |
| EaeI | YGGCCR | 3 cut(s) | 102, 1821, 2122 |
| Eam1104I | CTCTTC | 4 cut(s) | 139, 618, 1972, 2850 |
| EarI | CTCTTC | 4 cut(s) | 139, 618, 1972, 2850 |
| Ecl136II | GAGCTC | 3 cut(s) | 81, 279, 2713 |
| Eco130I | CCWWGG | 8 cut(s) | 303, 309, 612, 776, 1343, 1503, 1882, 2769 |
| Eco24I | GRGCYC | 3 cut(s) | 83, 281, 2715 |
| Eco31I | GGTCTC | 2 cut(s) | 1930, 3021 |
| Eco32I | GATATC | 3 cut(s) | 1671, 2599, 2742 |
| Eco47I | GGWCC | 5 cut(s) | 1361, 1379, 1500, 2411, 2935 |
| Eco53kI | GAGCTC | 3 cut(s) | 81, 279, 2713 |
| Eco57I | CTGAAG | 5 cut(s) | 400, 645, 900, 2555, 2874 |
| Eco88I | CYCGRG | 1 cut(s) | 323 |
| Eco91I | GGTNACC | 1 cut(s) | 853 |
| EcoICRI | GAGCTC | 3 cut(s) | 81, 279, 2713 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1374 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1886 |
| EcoO65I | GGTNACC | 1 cut(s) | 853 |
| EcoRII | CCWGG | 3 cut(s) | 961, 1381, 1999 |
| EcoRV | GATATC | 3 cut(s) | 1671, 2599, 2742 |
| EcoT14I | CCWWGG | 8 cut(s) | 303, 309, 612, 776, 1343, 1503, 1882, 2769 |
| EcoT22I | ATGCAT | 2 cut(s) | 115, 2892 |
| EcoT38I | GRGCYC | 3 cut(s) | 83, 281, 2715 |
| ErhI | CCWWGG | 8 cut(s) | 303, 309, 612, 776, 1343, 1503, 1882, 2769 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1461, 1493 |
| FaqI | GGGAC | 3 cut(s) | 1467, 2936, 2948 |
| FauNDI | CATATG | 1 cut(s) | 115 |
| FblI | GTMKAC | 1 cut(s) | 3012 |
| FokI | GGATG | 7 cut(s) | 50, 737, 1546, 2445, 2709, 2741, 2786 |
| FriOI | GRGCYC | 3 cut(s) | 83, 281, 2715 |
| FspBI | CTAG | 6 cut(s) | 360, 707, 1263, 1734, 1974, 2117 |
| GlaI | GCGC | 1 cut(s) | 47 |
| GsaI | CCCAGC | 1 cut(s) | 380 |
| GsuI | CTGGAG | 3 cut(s) | 1090, 1194, 2515 |
| HaeIII | GGCC | 7 cut(s) | 104, 308, 840, 1823, 1887, 2059, 2124 |
| HapII | CCGG | 1 cut(s) | 1132 |
| HgaI | GACGC | 1 cut(s) | 37 |
| HhaI | GCGC | 1 cut(s) | 48 |
| Hin6I | GCGC | 1 cut(s) | 46 |
| HinP1I | GCGC | 1 cut(s) | 46 |
| HincII | GTYRAC | 1 cut(s) | 2558 |
| HindII | GTYRAC | 1 cut(s) | 2558 |
| HindIII | AAGCTT | 1 cut(s) | 657 |
| HinfI | GANTC | 7 cut(s) | 353, 388, 626, 1001, 1024, 1198, 2554 |
| HpaII | CCGG | 1 cut(s) | 1132 |
| HphI | GGTGA | 4 cut(s) | 865, 1147, 1621, 1911 |
| Hpy166II | GTNNAC | 5 cut(s) | 646, 1628, 2403, 2558, 3013 |
| Hpy8I | GTNNAC | 5 cut(s) | 646, 1628, 2403, 2558, 3013 |
| Hpy99I | CGWCG | 2 cut(s) | 2015, 2018 |
| HpyCH4III | ACNGT | 6 cut(s) | 89, 742, 1463, 2562, 2624, 2766 |
| HpyCH4IV | ACGT | 3 cut(s) | 1032, 2016, 2068 |
| HpySE526I | ACGT | 3 cut(s) | 1032, 2016, 2068 |
| HspAI | GCGC | 1 cut(s) | 46 |
| LmnI | GCTCC | 6 cut(s) | 86, 276, 608, 1615, 2473, 2899 |
| LweI | GCATC | 4 cut(s) | 100, 1214, 1473, 2187 |
| MaeI | CTAG | 6 cut(s) | 360, 707, 1263, 1734, 1974, 2117 |
| MaeII | ACGT | 3 cut(s) | 1032, 2016, 2068 |
| MaeIII | GTNAC | 5 cut(s) | 449, 853, 1135, 2020, 2353 |
| MfeI | CAATTG | 3 cut(s) | 171, 2468, 2789 |
| MflI | RGATCY | 3 cut(s) | 295, 404, 769 |
| MhlI | GDGCHC | 8 cut(s) | 83, 281, 520, 1630, 2405, 2478, 2715, 3000 |
| MlsI | TGGCCA | 3 cut(s) | 104, 1823, 2124 |
| MluNI | TGGCCA | 3 cut(s) | 104, 1823, 2124 |
| MlyI | GAGTC | 3 cut(s) | 635, 1010, 2563 |
| MmeI | TCCRAC | 3 cut(s) | 15, 108, 2214 |
| Mox20I | TGGCCA | 3 cut(s) | 104, 1823, 2124 |
| Mph1103I | ATGCAT | 2 cut(s) | 115, 2892 |
| MroXI | GAANNNNTTC | 4 cut(s) | 352, 1023, 1834, 2486 |
| MscI | TGGCCA | 3 cut(s) | 104, 1823, 2124 |
| MseI | TTAA | 4 cut(s) | 527, 2301, 2424, 2784 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1542, 2622 |
| Msp20I | TGGCCA | 3 cut(s) | 104, 1823, 2124 |
| MspA1I | CMGCKG | 2 cut(s) | 752, 3003 |
| MspI | CCGG | 1 cut(s) | 1132 |
| MspR9I | CCNGG | 4 cut(s) | 963, 1133, 1383, 2001 |
| MunI | CAATTG | 3 cut(s) | 171, 2468, 2789 |
| Mva1269I | GAATGC | 4 cut(s) | 642, 2208, 2294, 2610 |
| MvaI | CCWGG | 3 cut(s) | 963, 1383, 2001 |
| MvnI | CGCG | 1 cut(s) | 48 |
| NciI | CCSGG | 1 cut(s) | 1133 |
| NcoI | CCATGG | 3 cut(s) | 303, 612, 1343 |
| NdeI | CATATG | 1 cut(s) | 115 |
| NlaIV | GGNNCC | 8 cut(s) | 191, 406, 610, 1501, 1804, 2431, 2901, 2936 |
| NmeAIII | GCCGAG | 1 cut(s) | 321 |
| NmuCI | GTSAC | 3 cut(s) | 853, 1135, 2020 |
| NsiI | ATGCAT | 2 cut(s) | 115, 2892 |
| NspI | RCATGY | 1 cut(s) | 549 |
| NspV | TTCGAA | 1 cut(s) | 2805 |
| PaeI | GCATGC | 1 cut(s) | 549 |
| PaeR7I | CTCGAG | 1 cut(s) | 323 |
| PagI | TCATGA | 4 cut(s) | 600, 1327, 1543, 2617 |
| PctI | GAATGC | 4 cut(s) | 642, 2208, 2294, 2610 |
| PdmI | GAANNNNTTC | 4 cut(s) | 352, 1023, 1834, 2486 |
| PfeI | GAWTC | 4 cut(s) | 353, 388, 1024, 1198 |
| PflFI | GACNNNGTC | 1 cut(s) | 2764 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1569 |
| Ple19I | CGATCG | 1 cut(s) | 14 |
| PleI | GAGTC | 3 cut(s) | 634, 1009, 2562 |
| PpsI | GAGTC | 3 cut(s) | 634, 1009, 2562 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2334, 2625 |
| PsiI | TTATAA | 1 cut(s) | 2975 |
| Psp124BI | GAGCTC | 3 cut(s) | 83, 281, 2715 |
| Psp6I | CCWGG | 3 cut(s) | 961, 1381, 1999 |
| PspEI | GGTNACC | 1 cut(s) | 853 |
| PspFI | CCCAGC | 1 cut(s) | 376 |
| PspGI | CCWGG | 3 cut(s) | 961, 1381, 1999 |
| PspN4I | GGNNCC | 8 cut(s) | 191, 406, 610, 1501, 1804, 2431, 2901, 2936 |
| PspPI | GGNCC | 7 cut(s) | 838, 1361, 1379, 1500, 1886, 2411, 2935 |
| PstI | CTGCAG | 2 cut(s) | 654, 1777 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| PsuI | RGATCY | 3 cut(s) | 295, 404, 769 |
| PsyI | GACNNNGTC | 1 cut(s) | 2764 |
| PvuI | CGATCG | 1 cut(s) | 14 |
| PvuII | CAGCTG | 1 cut(s) | 752 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1542, 2622 |
| SacI | GAGCTC | 3 cut(s) | 83, 281, 2715 |
| SaqAI | TTAA | 4 cut(s) | 527, 2301, 2424, 2784 |
| Sau96I | GGNCC | 7 cut(s) | 838, 1361, 1379, 1500, 1886, 2411, 2935 |
| SbfI | CCTGCAGG | 1 cut(s) | 654 |
| SchI | GAGTC | 3 cut(s) | 635, 1010, 2563 |
| ScrFI | CCNGG | 4 cut(s) | 963, 1133, 1383, 2001 |
| SdaI | CCTGCAGG | 1 cut(s) | 654 |
| SduI | GDGCHC | 8 cut(s) | 83, 281, 520, 1630, 2405, 2478, 2715, 3000 |
| SfaNI | GCATC | 4 cut(s) | 100, 1214, 1473, 2187 |
| SfcI | CTRYAG | 3 cut(s) | 650, 955, 1773 |
| Sfr274I | CTCGAG | 1 cut(s) | 323 |
| SfuI | TTCGAA | 1 cut(s) | 2805 |
| SinI | GGWCC | 5 cut(s) | 1361, 1379, 1500, 2411, 2935 |
| SlaI | CTCGAG | 1 cut(s) | 323 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1542, 2622 |
| SmlI | CTYRAG | 5 cut(s) | 178, 323, 631, 799, 842 |
| SmoI | CTYRAG | 5 cut(s) | 178, 323, 631, 799, 842 |
| SpeI | ACTAGT | 1 cut(s) | 1262 |
| SphI | GCATGC | 1 cut(s) | 549 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 654 |
| SsiI | CCGC | 6 cut(s) | 858, 1092, 2293, 2530, 2673, 3003 |
| SspI | AATATT | 1 cut(s) | 984 |
| SspMI | CTAG | 6 cut(s) | 360, 707, 1263, 1734, 1974, 2117 |
| SstI | GAGCTC | 3 cut(s) | 83, 281, 2715 |
| StyD4I | CCNGG | 4 cut(s) | 961, 1131, 1381, 1999 |
| StyI | CCWWGG | 8 cut(s) | 303, 309, 612, 776, 1343, 1503, 1882, 2769 |
| TaaI | ACNGT | 6 cut(s) | 89, 742, 1463, 2562, 2624, 2766 |
| TaiI | ACGT | 3 cut(s) | 1035, 2019, 2071 |
| TaqI | TCGA | 7 cut(s) | 324, 789, 1646, 2010, 2212, 2805, 2877 |
| TauI | GCSGC | 2 cut(s) | 2295, 2676 |
| TfiI | GAWTC | 4 cut(s) | 353, 388, 1024, 1198 |
| Tru1I | TTAA | 4 cut(s) | 527, 2301, 2424, 2784 |
| Tru9I | TTAA | 4 cut(s) | 527, 2301, 2424, 2784 |
| TscAI | CASTG | 4 cut(s) | 745, 1782, 2469, 2629 |
| TseFI | GTSAC | 3 cut(s) | 853, 1135, 2020 |
| Tsp45I | GTSAC | 3 cut(s) | 853, 1135, 2020 |
| TspGWI | ACGGA | 1 cut(s) | 2442 |
| TspRI | CASTG | 4 cut(s) | 745, 1782, 2469, 2629 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2764 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1569 |
| VneI | GTGCAC | 2 cut(s) | 1626, 2401 |
| VpaK11BI | GGWCC | 5 cut(s) | 1361, 1379, 1500, 2411, 2935 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1374 |
| XapI | RAATTY | 4 cut(s) | 572, 1547, 1849, 1906 |
| XbaI | TCTAGA | 1 cut(s) | 1973 |
| XceI | RCATGY | 1 cut(s) | 549 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1566 |
| XhoI | CTCGAG | 1 cut(s) | 323 |
| XmiI | GTMKAC | 1 cut(s) | 3012 |
| XmnI | GAANNNNTTC | 4 cut(s) | 352, 1023, 1834, 2486 |
| XspI | CTAG | 6 cut(s) | 360, 707, 1263, 1734, 1974, 2117 |
| Zsp2I | ATGCAT | 2 cut(s) | 115, 2892 |