Rh6BG420400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
64419572 .. 64421803
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG420400.1

Sequence Viewer

Length: 1785 bp
ATGGGCCTGGATGAGCTTCCCAAAAATGAAAACGCAAAATCCACTACCACACAGAAAGACAACATCCCCAAGAAACCAAGAAAAAGGGGAGCTGCAATAGGGCACACAATGCAGGAAAGTAGTAAGATTGCTGGTGTTAAGACCAAAGATGAAAAGGTCCTGCCTGCCAACAACAATGTTGGCCTTGAGATGGTTATTCATGATGGAAAACAATCCTCAAAAGACTTGATGGGAATAAAACCTGTGACAAGATCAGGAAAGACGACCACCATGAAAACAGATAAGCAGCAAAGTGCCCAATTCAGACAGAACAGCAGTAAGGATAATCACGAAAAAGAAAGAAAGCAGGATACTATGAGGTTTGGGGAACAAAAGTTGCAGGTAAGAAAACAACAAGGTACTGAGATGGTATCCAAGAGTACATCCAACAAGGCAGCAAAACAGCCTCACACAAGCCAAGCCAGGGTAAATAGAAACAGTATGATAGAAGTTGTTAATGCTGTGCAACCCAGAGGAGTTCCAAATGGCAATTACCACGAGAATATGGTGAGAAGAAAAAGTTCAGCTGAATTGAACATCCATATGAATGATTTTCCTCAAAAGGACTCAGATCAAGAAAATTTAGGCATTCCACCAGCTATGAAGGAGAAAGCTGTTCATCATGTAGCACCCTTACAGAAGGCAAAAACTAGAAGAGTGAATAAAAGTGAAATTCCTCGAAGAGTGGATGAAGTAGTGACCAGAAGAAATGGAACGCTGAATAAGTTGACAAGGCCACCAAAACAATCTATTTTGGAGCAAGTGACACATAGAACCCATGATAAAGTCAGTGGCCACAGTGGAGCAGAAAAGGGTAGAACCAGCAGGTTGAAACAAGCAGAGCCACGCATAGTCAAGTCCAACAAATCAACAGAAAGCACTCGACCACTACATTTGGTACAGAACCTACAGAAAGAAGCTGAGGCTCCTACTTTCTATGGTCACAATGAAGACGAATTCCGAAGCCTCCGAGAACCAAAAACTCTAGTCCCACATGACAGTTGTCAAAATTCAGTCTCAGTAGTACCTAACGATCAACATGATCAAGTACCAATCTTTGGAGCTGATGAGTGCATTACATCACCAAATGCACTTAATGGAACCCAATCAACCCATGAAGACATCTTGGATATTTCATCCACATTGCAATTGGAGCAACAGAAGCCTTTCAAATGGAGAAAACAAGAGCCACTTACAGAAACTGAAATCCTTCTCAAGCAGATAGTGATCCAGAGCCAACTGTTCCTCAACACAGCAGAGGCACTTTTCAGACTCGAAATCCCTTTCGGAATTCTCCACGCTAGTAGTAGCGACTACGATCATGAGTACAACTACATCACTCATCCCGAAGACATAAAGCTCACATTAGACTGCAGCTACGAGATAATGAAAAGAAAAGGTAAAAGGCAAGAGCTCGCTGTGCATCCCAATTTTGTGAAGGTATCCATAAGCTTCACTCAGGTCCAGTCTCTGGATGAGCTGGTTAAGCAATTGAGTAAAGACATTGATAAGCTGAAACTGTATGGGAAGAATGGAAAACTGGAATGTGGGGCTGAAGAGTATGTGCCTAGAATGCTTGAATTCGACGTGAATAACAGGGAGCCTGAGCTGAACTGTATGTGGGATTTGGGTTGGGATGTGACCATGTTTGGGTTTGTTGAAGTGGATGAAGTTGTTAGGGATCTGGAGAGGGGTGTGCTCACTGGACTTGTTGATGAGCTTACCAGAGACCTCTTTCATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

594

Amino Acids

67.55

Weight (kDa)

8.91

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 370, 855
AccB7I CCANNNNNTGG 2 cut(s) 1097, 1510
AclWI GGATC 2 cut(s) 1261, 1728
AcoI YGGCCR 1 cut(s) 832
AcsI RAATTY 6 cut(s) 619, 711, 995, 1048, 1329, 1619
AcuI CTGAAG 1 cut(s) 1614
AfaI GTAC 6 cut(s) 400, 421, 939, 1065, 1089, 1367
AfiI CCNNNNNNNGG 5 cut(s) 190, 463, 1097, 1510, 1689
AgsI TTSAA 5 cut(s) 574, 871, 1210, 1619, 1700
AjiI CACGTC 1 cut(s) 1627
AjnI CCWGG 2 cut(s) 6, 461
Alw21I GWGCWC 2 cut(s) 1455, 1740
Alw26I GTCTC 3 cut(s) 1060, 1512, 1761
AlwI GGATC 2 cut(s) 1261, 1728
AlwNI CAGNNNCTG 2 cut(s) 1241, 1510
AoxI GGCC 4 cut(s) 4, 181, 773, 832
ApeKI GCWGC 4 cut(s) 92, 286, 434, 1413
ApoI RAATTY 6 cut(s) 619, 711, 995, 1048, 1329, 1619
Asp700I GAANNNNTTC 3 cut(s) 559, 1205, 1248
AspS9I GGNCC 3 cut(s) 4, 157, 1501
AsuHPI GGTGA 2 cut(s) 559, 1113
AvaII GGWCC 2 cut(s) 157, 1501
BaeGI GKGCMC 2 cut(s) 105, 298
BalI TGGCCA 1 cut(s) 834
BanII GRGCYC 1 cut(s) 1455
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 3 cut(s) 996, 1164, 1395
Bbv12I GWGCWC 2 cut(s) 1455, 1740
BbvCI CCTCAGC 1 cut(s) 960
BbvI GCAGC 4 cut(s) 79, 298, 446, 1425
BccI CCATC 4 cut(s) 184, 197, 223, 400
BciT130I CCWGG 2 cut(s) 8, 463
BciVI GTATCC 3 cut(s) 343, 421, 1492
BclI TGATCA 1 cut(s) 1081
BcoDI GTCTC 3 cut(s) 1060, 1512, 1761
BfaI CTAG 4 cut(s) 690, 1025, 1341, 1608
BfmI CTRYAG 2 cut(s) 947, 1411
BfuAI ACCTGC 2 cut(s) 370, 855
BfuI GTATCC 3 cut(s) 343, 421, 1492
BisI GCNGC 4 cut(s) 93, 287, 435, 1414
BlsI GCNGC 4 cut(s) 94, 288, 436, 1415
Bme1390I CCNGG 2 cut(s) 8, 463
Bme18I GGWCC 2 cut(s) 157, 1501
BmgBI CACGTC 1 cut(s) 1627
BmgT120I GGNCC 3 cut(s) 4, 157, 1501
BmiI GGNNCC 3 cut(s) 966, 1141, 1641
BmrFI CCNGG 2 cut(s) 8, 463
BmsI GCATC 1 cut(s) 1471
BoxI GACNNNNGTC 1 cut(s) 1041
BpiI GAAGAC 3 cut(s) 996, 1164, 1395
BpmI CTGGAG 1 cut(s) 1745
Bpu10I CCTNAGC 2 cut(s) 960, 1644
BpuEI CTTGAG 2 cut(s) 206, 1238
BsaBI GATNNNNATC 1 cut(s) 1265
BsaI GGTCTC 1 cut(s) 1761
BsaJI CCNNGG 1 cut(s) 462
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 463, 1097, 1510, 1689
Bse1I ACTGG 3 cut(s) 1504, 1584, 1747
Bse3DI GCAATG 1 cut(s) 1181
Bse8I GATNNNNATC 1 cut(s) 1265
BseBI CCWGG 2 cut(s) 8, 463
BseDI CCNNGG 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 1265
BseLI CCNNNNNNNGG 5 cut(s) 190, 463, 1097, 1510, 1689
BseMI GCAATG 1 cut(s) 1181
BseMII CTCAG 6 cut(s) 393, 621, 951, 1071, 1511, 1635
BseNI ACTGG 3 cut(s) 1504, 1584, 1747
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 2 cut(s) 105, 298
BseXI GCAGC 4 cut(s) 79, 298, 446, 1425
BshFI GGCC 4 cut(s) 6, 183, 775, 834
BsiHKAI GWGCWC 2 cut(s) 1455, 1740
BslFI GGGAC 1 cut(s) 1013
BslI CCNNNNNNNGG 5 cut(s) 190, 463, 1097, 1510, 1689
BsmAI GTCTC 3 cut(s) 1060, 1512, 1761
BsmFI GGGAC 1 cut(s) 1013
BsmI GAATGC 2 cut(s) 627, 1617
BsnI GGCC 4 cut(s) 6, 183, 775, 834
Bso31I GGTCTC 1 cut(s) 1761
Bsp1286I GDGCHC 4 cut(s) 105, 298, 1455, 1740
Bsp143I GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
BspANI GGCC 4 cut(s) 6, 183, 775, 834
BspCNI CTCAG 6 cut(s) 394, 620, 952, 1070, 1510, 1636
BspHI TCATGA 2 cut(s) 199, 1360
BspLI GGNNCC 3 cut(s) 966, 1141, 1641
BspMAI CTGCAG 1 cut(s) 1415
BspMI ACCTGC 2 cut(s) 370, 855
BspPI GGATC 2 cut(s) 1261, 1728
BspTNI GGTCTC 1 cut(s) 1761
BsrDI GCAATG 1 cut(s) 1181
BsrI ACTGG 3 cut(s) 1504, 1584, 1747
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 8, 463
Bst4CI ACNGT 6 cut(s) 479, 839, 1040, 1281, 1560, 1655
Bst6I CTCTTC 3 cut(s) 688, 715, 1590
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 165, 1455
BstDEI CTNAG 6 cut(s) 402, 607, 960, 1057, 1497, 1644
BstKTI GATC 7 cut(s) 254, 613, 1075, 1084, 1269, 1360, 1723
BstMAI GTCTC 3 cut(s) 1060, 1512, 1761
BstMBI GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
BstMWI GCNNNNNNNGC 6 cut(s) 109, 1192, 1201, 1459, 1525, 1612
BstNI CCWGG 2 cut(s) 8, 463
BstPAI GACNNNNGTC 1 cut(s) 1041
BstSCI CCNGG 2 cut(s) 6, 461
BstSFI CTRYAG 2 cut(s) 947, 1411
BstSLI GKGCMC 2 cut(s) 105, 298
BstV1I GCAGC 4 cut(s) 79, 298, 446, 1425
BstV2I GAAGAC 3 cut(s) 996, 1164, 1395
BstX2I RGATCY 1 cut(s) 1720
BstYI RGATCY 1 cut(s) 1720
BsuI GTATCC 3 cut(s) 343, 421, 1492
BsuRI GGCC 4 cut(s) 6, 183, 775, 834
BtrI CACGTC 1 cut(s) 1627
BtsIMutI CAGTG 3 cut(s) 835, 844, 1740
BveI ACCTGC 2 cut(s) 370, 855
Cac8I GCNNGC 2 cut(s) 165, 1455
CaiI CAGNNNCTG 2 cut(s) 1241, 1510
CciI TCATGA 2 cut(s) 199, 1360
Cfr13I GGNCC 3 cut(s) 4, 157, 1501
Csp6I GTAC 6 cut(s) 399, 420, 938, 1064, 1088, 1366
CspCI CAANNNNNGTGG 2 cut(s) 915, 950
CviAII CATG 9 cut(s) 200, 271, 662, 818, 1034, 1079, 1154, 1361, 1684
CviQI GTAC 6 cut(s) 399, 420, 938, 1064, 1088, 1366
DdeI CTNAG 6 cut(s) 402, 607, 960, 1057, 1497, 1644
DpnI GATC 7 cut(s) 253, 612, 1074, 1083, 1268, 1359, 1722
DpnII GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
EaeI YGGCCR 1 cut(s) 832
Eam1104I CTCTTC 3 cut(s) 688, 715, 1590
EarI CTCTTC 3 cut(s) 688, 715, 1590
Ecl136II GAGCTC 1 cut(s) 1453
Eco24I GRGCYC 1 cut(s) 1455
Eco31I GGTCTC 1 cut(s) 1761
Eco47I GGWCC 2 cut(s) 157, 1501
Eco53kI GAGCTC 1 cut(s) 1453
Eco57I CTGAAG 1 cut(s) 1614
EcoICRI GAGCTC 1 cut(s) 1453
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 3 cut(s) 995, 1329, 1619
EcoRII CCWGG 2 cut(s) 6, 461
EcoT38I GRGCYC 1 cut(s) 1455
FaeI CATG 9 cut(s) 203, 274, 665, 821, 1037, 1082, 1157, 1364, 1687
FalI AAGNNNNNCTT 2 cut(s) 1215, 1247
FaqI GGGAC 1 cut(s) 1013
FatI CATG 9 cut(s) 199, 270, 661, 817, 1033, 1078, 1153, 1360, 1683
FauNDI CATATG 2 cut(s) 582, 1779
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 4 cut(s) 93, 287, 435, 1414
FriOI GRGCYC 1 cut(s) 1455
Fsp4HI GCNGC 4 cut(s) 93, 287, 435, 1414
FspBI CTAG 4 cut(s) 690, 1025, 1341, 1608
GluI GCNGC 4 cut(s) 93, 287, 435, 1414
GsuI CTGGAG 1 cut(s) 1745
HaeIII GGCC 4 cut(s) 6, 183, 775, 834
Hin1II CATG 9 cut(s) 203, 274, 665, 821, 1037, 1082, 1157, 1364, 1687
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HindIII AAGCTT 1 cut(s) 1489
HinfI GANTC 2 cut(s) 605, 1311
HphI GGTGA 2 cut(s) 559, 1113
Hpy166II GTNNAC 1 cut(s) 768
Hpy188I TCNGA 6 cut(s) 305, 610, 1001, 1010, 1310, 1328
Hpy188III TCNNGA 9 cut(s) 200, 255, 329, 614, 1270, 1361, 1385, 1511, 1724
Hpy8I GTNNAC 1 cut(s) 768
Hpy99I CGWCG 1 cut(s) 1628
HpyAV CCTTC 4 cut(s) 637, 673, 1259, 1471
HpyCH4III ACNGT 6 cut(s) 479, 839, 1040, 1281, 1560, 1655
HpyCH4IV ACGT 1 cut(s) 1626
HpyCH4V TGCA 9 cut(s) 95, 112, 379, 505, 1113, 1130, 1186, 1413, 1462
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 1192, 1201, 1459, 1525, 1612
HpyF3I CTNAG 6 cut(s) 402, 607, 960, 1057, 1497, 1644
HpySE526I ACGT 1 cut(s) 1626
Hsp92II CATG 9 cut(s) 203, 274, 665, 821, 1037, 1082, 1157, 1364, 1687
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
LmnI GCTCC 7 cut(s) 89, 796, 842, 970, 1100, 1192, 1639
Lsp1109I GCAGC 4 cut(s) 79, 298, 446, 1425
LweI GCATC 1 cut(s) 1471
MaeI CTAG 4 cut(s) 690, 1025, 1341, 1608
MaeII ACGT 1 cut(s) 1626
MaeIII GTNAC 5 cut(s) 244, 736, 802, 980, 1678
MalI GATC 7 cut(s) 253, 612, 1074, 1083, 1268, 1359, 1722
MboI GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
MboII GAAGA 9 cut(s) 564, 705, 732, 756, 1001, 1169, 1400, 1579, 1607
MfeI CAATTG 2 cut(s) 1187, 1529
MflI RGATCY 1 cut(s) 1720
MhlI GDGCHC 4 cut(s) 105, 298, 1455, 1740
MlsI TGGCCA 1 cut(s) 834
MluNI TGGCCA 1 cut(s) 834
MlyI GAGTC 2 cut(s) 599, 1305
MmeI TCCRAC 2 cut(s) 450, 924
Mox20I TGGCCA 1 cut(s) 834
MroXI GAANNNNTTC 3 cut(s) 559, 1205, 1248
MscI TGGCCA 1 cut(s) 834
MseI TTAA 4 cut(s) 138, 495, 1134, 1524
MslI CAYNNNNRTG 2 cut(s) 581, 585
Msp20I TGGCCA 1 cut(s) 834
MspA1I CMGCKG 1 cut(s) 566
MspR9I CCNGG 2 cut(s) 8, 463
MunI CAATTG 2 cut(s) 1187, 1529
Mva1269I GAATGC 2 cut(s) 627, 1617
MvaI CCWGG 2 cut(s) 8, 463
MwoI GCNNNNNNNGC 6 cut(s) 109, 1192, 1201, 1459, 1525, 1612
NdeI CATATG 2 cut(s) 582, 1779
NdeII GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
NlaIII CATG 9 cut(s) 203, 274, 665, 821, 1037, 1082, 1157, 1364, 1687
NlaIV GGNNCC 3 cut(s) 966, 1141, 1641
NmuCI GTSAC 5 cut(s) 244, 736, 802, 980, 1678
PagI TCATGA 2 cut(s) 199, 1360
PctI GAATGC 2 cut(s) 627, 1617
PdmI GAANNNNTTC 3 cut(s) 559, 1205, 1248
PflMI CCANNNNNTGG 2 cut(s) 1097, 1510
PkrI GCNGC 4 cut(s) 94, 288, 436, 1415
PleI GAGTC 2 cut(s) 599, 1305
PpsI GAGTC 2 cut(s) 599, 1305
PpuMI RGGWCCY 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 1041
Psp124BI GAGCTC 1 cut(s) 1455
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 6, 461
PspGI CCWGG 2 cut(s) 6, 461
PspN4I GGNNCC 3 cut(s) 966, 1141, 1641
PspPI GGNCC 3 cut(s) 4, 157, 1501
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 1415
PstNI CAGNNNCTG 2 cut(s) 1241, 1510
PsuI RGATCY 1 cut(s) 1720
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 6 cut(s) 400, 421, 939, 1065, 1089, 1367
RsaNI GTAC 6 cut(s) 399, 420, 938, 1064, 1088, 1366
RseI CAYNNNNRTG 2 cut(s) 581, 585
SacI GAGCTC 1 cut(s) 1455
SaqAI TTAA 4 cut(s) 138, 495, 1134, 1524
SatI GCNGC 4 cut(s) 93, 287, 435, 1414
Sau3AI GATC 7 cut(s) 251, 610, 1072, 1081, 1266, 1357, 1720
Sau96I GGNCC 3 cut(s) 4, 157, 1501
SchI GAGTC 2 cut(s) 599, 1305
ScrFI CCNGG 2 cut(s) 8, 463
SduI GDGCHC 4 cut(s) 105, 298, 1455, 1740
SfaNI GCATC 1 cut(s) 1471
SfcI CTRYAG 2 cut(s) 947, 1411
SinI GGWCC 2 cut(s) 157, 1501
SmiMI CAYNNNNRTG 2 cut(s) 581, 585
SmlI CTYRAG 2 cut(s) 185, 1253
SmoI CTYRAG 2 cut(s) 185, 1253
SspMI CTAG 4 cut(s) 690, 1025, 1341, 1608
SstI GAGCTC 1 cut(s) 1455
StyD4I CCNGG 2 cut(s) 6, 461
TaaI ACNGT 6 cut(s) 479, 839, 1040, 1281, 1560, 1655
TaiI ACGT 1 cut(s) 1629
TaqI TCGA 4 cut(s) 718, 922, 1314, 1623
TatI WGTACW 2 cut(s) 419, 1365
Tru1I TTAA 4 cut(s) 138, 495, 1134, 1524
Tru9I TTAA 4 cut(s) 138, 495, 1134, 1524
TscAI CASTG 3 cut(s) 835, 844, 1747
TseFI GTSAC 5 cut(s) 244, 736, 802, 980, 1678
TseI GCWGC 4 cut(s) 92, 286, 434, 1413
Tsp45I GTSAC 5 cut(s) 244, 736, 802, 980, 1678
TspRI CASTG 3 cut(s) 835, 844, 1747
Van91I CCANNNNNTGG 2 cut(s) 1097, 1510
VpaK11BI GGWCC 2 cut(s) 157, 1501
XapI RAATTY 6 cut(s) 619, 711, 995, 1048, 1329, 1619
XcmI CCANNNNNNNNNTGG 1 cut(s) 1186
XmnI GAANNNNTTC 3 cut(s) 559, 1205, 1248
XspI CTAG 4 cut(s) 690, 1025, 1341, 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.