Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

60969586 .. 60970245

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG427900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAAGTTGCAGGAACCCAATCAACCCATGAAGACACCTTGAATATTTCATCCACATTGCAATTGGAGCAACAGAAGCCTTTCAAATGGAGAAAACAAAAGCCACTTACAGAAACTGAAATCCTTCTCAAGCAGATAGTGATCCAGAGCCAACTGTTCCTCAACACAGCAGAGGCACTTTTCAGACTCGAAATCCCTTTCGGAATTCTCCACGCTAGTAGTAGCGACTACGATCATGAGTACAACTACATCACTCATCCCGAAGACATTAAGCTCACATTAGACTGCAGCTACGAGATAATGAAAAGAAAAGGTAAAAGGCAAGAGCTCGCTGTGCATCCCAATTTTGTGAGGGTATCCATAAGCTTCACTCAGGTCCAGTCTCTGGATGAGCTGGTTAAGCAGTTGAGTAAAGACATTGATAAGCTGAAACTGTATGGGAAGAATGGAAAACTGGAATGTGGGGCTGAAGAGTATGTGCCTAGAATGCTTGAATTCGACGTGAATAATAGGGAGCCTGAGCTGAACTGTATGTGGGATTTGGGTTGGGATGTGACCATGTTTGGGTTTGTTGAAGTGGATGAAGTTGTTAGGGATTTGGAGAGGGGTGTGCTCGGTAGACTTGTTGATGAGCTTACCAGAGACCTCTTTCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

219

Amino Acids

25.54

Weight (kDa)

5.23

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	619
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	204, 494
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	385, 564
AgsI	TTSAA	4 cut(s)	43, 85, 494, 575
AjiI	CACGTC	1 cut(s)	502
AluBI	AGCT	8 cut(s)	274, 291, 328, 366, 394, 427, 523, 634
AluI	AGCT	8 cut(s)	274, 291, 328, 366, 394, 427, 523, 634
Alw21I	GWGCWC	2 cut(s)	330, 615
Alw26I	GTCTC	2 cut(s)	387, 636
AlwI	GGATC	1 cut(s)	136
AlwNI	CAGNNNCTG	2 cut(s)	116, 385
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	204, 494
Asp700I	GAANNNNTTC	2 cut(s)	80, 123
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	2 cut(s)	39, 270
Bbv12I	GWGCWC	2 cut(s)	330, 615
BbvI	GCAGC	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	387, 636
BfaI	CTAG	2 cut(s)	216, 483
BfmI	CTRYAG	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	16, 516
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	2 cut(s)	39, 270
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 564
Bse1I	ACTGG	2 cut(s)	379, 459
Bse3DI	GCAATG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	140
BseGI	GGATG	6 cut(s)	50, 256, 337, 394, 556, 586
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	385, 564
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	386, 510
BseNI	ACTGG	2 cut(s)	379, 459
BseXI	GCAGC	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	330, 615
BslI	CCNNNNNNNGG	2 cut(s)	385, 564
BsmAI	GTCTC	2 cut(s)	387, 636
BsmI	GAATGC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	330, 615
Bsp143I	GATC	2 cut(s)	141, 232
BspCNI	CTCAG	2 cut(s)	385, 511
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	16, 516
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	379, 459
BssMI	GATC	2 cut(s)	141, 232
Bst4CI	ACNGT	3 cut(s)	156, 435, 530
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	372, 519
BstF5I	GGATG	6 cut(s)	50, 256, 337, 394, 556, 586
BstKTI	GATC	2 cut(s)	144, 235
BstMAI	GTCTC	2 cut(s)	387, 636
BstMBI	GATC	2 cut(s)	141, 232
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 76, 334, 400, 487
BstSFI	CTRYAG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	2 cut(s)	39, 270
BsuI	GTATCC	1 cut(s)	367
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	6 cut(s)	50, 256, 337, 394, 556, 586
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	2 cut(s)	116, 385
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	29, 236, 559
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	372, 519
DpnI	GATC	2 cut(s)	143, 234
DpnII	GATC	2 cut(s)	141, 232
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	328
EcoRI	GAATTC	2 cut(s)	204, 494
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	3 cut(s)	32, 239, 562
FaiI	YATR	9 cut(s)	30, 237, 362, 438, 477, 533, 560, 654, 656
FatI	CATG	3 cut(s)	28, 235, 558
FauNDI	CATATG	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	6 cut(s)	37, 243, 324, 401, 563, 593
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	216, 483
GluI	GCNGC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	32, 239, 562
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	2 cut(s)	185, 203
Hpy188III	TCNNGA	4 cut(s)	145, 236, 260, 386
Hpy8I	GTNNAC	1 cut(s)	620
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	156, 435, 530
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	11, 61, 288, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 76, 334, 400, 487
HpyF3I	CTNAG	2 cut(s)	372, 519
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	32, 239, 562
Kzo9I	GATC	2 cut(s)	141, 232
LmnI	GCTCC	2 cut(s)	67, 514
LpnPI	CCDG	8 cut(s)	158, 359, 371, 380, 392, 440, 531, 652
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	216, 483
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	2 cut(s)	143, 234
MboI	GATC	2 cut(s)	141, 232
MboII	GAAGA	4 cut(s)	44, 275, 454, 482
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	330, 615
MluCI	AATT	4 cut(s)	62, 204, 343, 494
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	166, 170, 345, 597, 656
MroXI	GAANNNNTTC	2 cut(s)	80, 123
MseI	TTAA	2 cut(s)	270, 399
MunI	CAATTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	492
MwoI	GCNNNNNNNGC	5 cut(s)	67, 76, 334, 400, 487
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	2 cut(s)	141, 232
NlaIII	CATG	3 cut(s)	32, 239, 562
NlaIV	GGNNCC	2 cut(s)	16, 516
NmuCI	GTSAC	1 cut(s)	553
PagI	TCATGA	1 cut(s)	235
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	2 cut(s)	80, 123
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	16, 516
PspPI	GGNCC	1 cut(s)	376
PstI	CTGCAG	1 cut(s)	290
PstNI	CAGNNNCTG	2 cut(s)	116, 385
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	270, 399
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	141, 232
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	330, 615
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	62, 204, 343, 494
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	2 cut(s)	216, 483
SstI	GAGCTC	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	156, 435, 530
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	189, 498
TasI	AATT	4 cut(s)	62, 204, 343, 494
TatI	WGTACW	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	270, 399
Tru9I	TTAA	2 cut(s)	270, 399
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	6 cut(s)	17, 39, 45, 317, 597, 641
Van91I	CCANNNNNTGG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	204, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	619
XmnI	GAANNNNTTC	2 cut(s)	80, 123
XspI	CTAG	2 cut(s)	216, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.