Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

60917126 .. 60917560

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG413500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCTTGGCTTTTGCACTTGAGAATGGAGCCACAAATCTCACCAGAACAAGTTCATCAAGCAAAAGTTCAGTGATGGGGTTTCTGAATCAAATTGGTAGGGGATCCATGGACTTCAACAAAATGGAAAGAAAGGGAAATTTCAACATGTACTGGGGTTCAAGTAGTCAGTTCCCTAACCTTTCAAGTTTCCATATAGAAGAAATATCCAGAGGGGCACAGAAACTAAACCAGATCCTTAGAGCTTGCTCCAATGGTGTTAATGCTGATAAGTTTTCAATAGAGATCGGGAAGGAACTGTTTAAAGGGGCCATGGATTTGGAAGAGTCCTTGAGAATGCTTGTGGACCTGCAGGAAGCTTCTGAACATATGACCACCTCCCAAAGGAAAAGTCGGATCACATTGCTAGACGAAGATGAAGATGGTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

144

Amino Acids

16.05

Weight (kDa)

5.1

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AclWI	GGATC	4 cut(s)	99, 112, 229, 404
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	5 cut(s)	118, 145, 162, 186, 279
AluBI	AGCT	2 cut(s)	245, 359
AluI	AGCT	2 cut(s)	245, 359
AlwI	GGATC	4 cut(s)	99, 112, 229, 404
AoxI	GGCC	2 cut(s)	3, 309
ApoI	RAATTY	1 cut(s)	139
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	309, 346
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	104
BccI	CCATC	2 cut(s)	70, 416
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	309, 346
BmiI	GGNNCC	3 cut(s)	31, 106, 310
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	41, 352
BsaJI	CCNNGG	3 cut(s)	6, 108, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	6, 108, 312
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	5, 311
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	5, 311
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	104, 234, 285, 396
Bsp19I	CCATGG	2 cut(s)	108, 312
BspANI	GGCC	2 cut(s)	5, 311
BspLI	GGNNCC	3 cut(s)	31, 106, 310
BspMAI	CTGCAG	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	357
BspPI	GGATC	4 cut(s)	99, 112, 229, 404
BsrDI	GCAATG	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	6, 108, 312
BssMI	GATC	4 cut(s)	104, 234, 285, 396
BssT1I	CCWWGG	3 cut(s)	6, 108, 312
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	2 cut(s)	108, 312
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstKTI	GATC	4 cut(s)	107, 237, 288, 399
BstMBI	GATC	4 cut(s)	104, 234, 285, 396
BstNSI	RCATGY	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	104, 234
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	104, 234
BsuRI	GGCC	2 cut(s)	5, 311
BtgI	CCRYGG	2 cut(s)	108, 312
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	309, 346
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	109, 148, 313
CviJI	RGCY	6 cut(s)	5, 11, 32, 245, 311, 359
CviKI_1	RGCY	6 cut(s)	5, 11, 32, 245, 311, 359
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	106, 236, 287, 398
DpnII	GATC	4 cut(s)	104, 234, 285, 396
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	3 cut(s)	6, 108, 312
Eco47I	GGWCC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EcoT14I	CCWWGG	3 cut(s)	6, 108, 312
ErhI	CCWWGG	3 cut(s)	6, 108, 312
FaeI	CATG	3 cut(s)	112, 151, 316
FaiI	YATR	7 cut(s)	110, 149, 195, 197, 314, 369, 371
FatI	CATG	3 cut(s)	108, 147, 312
FauNDI	CATATG	1 cut(s)	369
FspBI	CTAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	5, 311
Hin1II	CATG	3 cut(s)	112, 151, 316
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	2 cut(s)	88, 326
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	87, 364, 396
Hpy188III	TCNNGA	2 cut(s)	210, 289
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	17, 352
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	112, 151, 316
Kzo9I	GATC	4 cut(s)	104, 234, 285, 396
LmnI	GCTCC	2 cut(s)	29, 254
LpnPI	CCDG	6 cut(s)	58, 139, 223, 245, 338, 362
MaeI	CTAG	1 cut(s)	407
MalI	GATC	4 cut(s)	106, 236, 287, 398
MboI	GATC	4 cut(s)	104, 234, 285, 396
MboII	GAAGA	4 cut(s)	212, 335, 425, 431
MflI	RGATCY	2 cut(s)	104, 234
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	93, 139
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	2 cut(s)	206, 388
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	2 cut(s)	261, 303
Mva1269I	GAATGC	1 cut(s)	342
NcoI	CCATGG	2 cut(s)	108, 312
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	4 cut(s)	104, 234, 285, 396
NlaIII	CATG	3 cut(s)	112, 151, 316
NlaIV	GGNNCC	3 cut(s)	31, 106, 310
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	31, 106, 310
PspPI	GGNCC	2 cut(s)	309, 346
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	104, 234
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	261, 303
Sau3AI	GATC	4 cut(s)	104, 234, 285, 396
Sau96I	GGNCC	2 cut(s)	309, 346
SbfI	CCTGCAGG	1 cut(s)	354
SchI	GAGTC	1 cut(s)	335
SdaI	CCTGCAGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	5 cut(s)	183, 247, 351, 361, 380
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	20, 331
SmoI	CTYRAG	2 cut(s)	20, 331
Sse8387I	CCTGCAGG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	93, 139
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	3 cut(s)	6, 108, 312
TaaI	ACNGT	1 cut(s)	300
TasI	AATT	2 cut(s)	93, 139
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	261, 303
Tru9I	TTAA	2 cut(s)	261, 303
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	45, 432
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.