Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001727

Physical Location & Seq

Genomic Coordinates Reverse (-)

55515914 .. 55517353

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGAAGAGATCAGATTTTGCGCAAAAGCTGCGGGATGATCTTCGGGTTAGGAAGGAACGAATGGTTGCACCAGCGCAGAGCTCAAACCGTTCAAATGCAATGGCTACAGATGCATATGCTTATTCCAAGCAAACTTATAGAGGATCAAGGGATACAAAAACCCATGGAATAACTAGTTCCAGAAATGGGAACCCCCAGAGCAGGTCAACTGGAAGTAGTAGAACATCTATTCGTCAAGAAGCTTCAATCCAGATGGTTGCTTATGGGAGAGGTGGGAACTCAGGACAAATAGTAGATCTTTCCATGGCCTTGGCTTTTGCACTTGAGAATGGAGCCACAAAACTCACCAGAACAAGTTCATCAAGCAAAAGTTCAGTGATGCGGTTTATGAATCAAATTGGTAGGGGATCCATGGACTTCATAAAATTGGAAAGAAAGGGAAATGTCAACATGTACTGGGGTTCAAGTAGTCAGTTCCCTAACCTTTCAAATTTCCGTATAGAAGAAATATCCAGAGGGGCACAGAAGTCAGAACCCATGCCCTCAGATTATGCAGAAACATGGAATTCTTCCACTAGTCAACCGGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

199

Amino Acids

21.91

Weight (kDa)

10.3

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42710 AT5G42710 AT5G42710
fragaria_vesca	FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870
malus_domestica	MD08G1035200.v1.1 MD15G1031800.v1.1
prunus_persica	Prupe.1G380200_v2.0.a1
pyrus_communis	pycom08g02780 pycom15g02750
rosa_chinensis	RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941
rosa_laevigata	RLG00000011289 RLG00000034832 RLG00000034833
rosa_multiflora	Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003
rosa_roxburghii	Rroxscaffold_1G00028100 Rroxscaffold_7G00167300
rosa_rugosa	Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700
rosa_samantha	Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300
rosa_wichuraiana	Rw5G032650 Rw5G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	195
AciI	CCGC	2 cut(s)	34, 385
AclWI	GGATC	3 cut(s)	154, 405, 418
AcsI	RAATTY	2 cut(s)	493, 568
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	189, 204
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	96, 249, 468, 492
AhlI	ACTAGT	2 cut(s)	176, 578
AluBI	AGCT	4 cut(s)	31, 84, 245, 594
AluI	AGCT	4 cut(s)	31, 84, 245, 594
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	154, 405, 418
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	493, 568
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	25, 79
AsuHPI	GGTGA	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	250
BciVI	GTATCC	1 cut(s)	148
BcuI	ACTAGT	2 cut(s)	176, 578
BfaI	CTAG	3 cut(s)	177, 579, 595
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	194, 337, 412
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	103, 372
BmuI	ACTGGG	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	166, 306, 312, 414
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 204
Bse1I	ACTGG	2 cut(s)	217, 464
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	166, 306, 312, 414
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	189, 204
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	297, 561
BseNI	ACTGG	2 cut(s)	217, 464
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	189, 204
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	86, 526
Bsp143I	GATC	5 cut(s)	11, 40, 146, 298, 410
Bsp19I	CCATGG	3 cut(s)	166, 306, 414
BspACI	CCGC	2 cut(s)	34, 385
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	296, 560
BspLI	GGNNCC	3 cut(s)	194, 337, 412
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	154, 405, 418
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	217, 464
BssECI	CCNNGG	4 cut(s)	166, 306, 312, 414
BssMI	GATC	5 cut(s)	11, 40, 146, 298, 410
BssT1I	CCWWGG	4 cut(s)	166, 306, 312, 414
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	283, 547
BstDSI	CCRYGG	3 cut(s)	166, 306, 414
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	25, 79
BstKTI	GATC	5 cut(s)	14, 43, 149, 301, 413
BstMBI	GATC	5 cut(s)	11, 40, 146, 298, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 113
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	298, 410
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	298, 410
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	3 cut(s)	166, 306, 414
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	195
CfoI	GCGC	2 cut(s)	25, 79
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	6 cut(s)	167, 307, 415, 454, 541, 564
CviJI	RGCY	8 cut(s)	31, 84, 107, 245, 311, 317, 338, 594
CviKI_1	RGCY	8 cut(s)	31, 84, 107, 245, 311, 317, 338, 594
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	283, 547
DpnI	GATC	5 cut(s)	13, 42, 148, 300, 412
DpnII	GATC	5 cut(s)	11, 40, 146, 298, 410
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	4 cut(s)	166, 306, 312, 414
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	568
EcoT14I	CCWWGG	4 cut(s)	166, 306, 312, 414
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	4 cut(s)	166, 306, 312, 414
FaeI	CATG	6 cut(s)	170, 310, 418, 457, 544, 567
FatI	CATG	6 cut(s)	166, 306, 414, 453, 540, 563
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	3 cut(s)	177, 579, 595
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 78
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	2 cut(s)	25, 79
Hin1II	CATG	6 cut(s)	170, 310, 418, 457, 544, 567
Hin6I	GCGC	2 cut(s)	23, 77
HinP1I	GCGC	2 cut(s)	23, 77
HincII	GTYRAC	3 cut(s)	210, 451, 584
HindII	GTYRAC	3 cut(s)	210, 451, 584
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	210, 451, 584
Hpy188I	TCNGA	3 cut(s)	16, 535, 550
Hpy188III	TCNNGA	5 cut(s)	183, 239, 253, 285, 516
Hpy8I	GTNNAC	3 cut(s)	210, 451, 584
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	71, 101, 116, 323, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 113
HpyF3I	CTNAG	2 cut(s)	283, 547
Hsp92II	CATG	6 cut(s)	170, 310, 418, 457, 544, 567
HspAI	GCGC	2 cut(s)	23, 77
Kzo9I	GATC	5 cut(s)	11, 40, 146, 298, 410
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	103, 372
MaeI	CTAG	3 cut(s)	177, 579, 595
MalI	GATC	5 cut(s)	13, 42, 148, 300, 412
MboI	GATC	5 cut(s)	11, 40, 146, 298, 410
MboII	GAAGA	4 cut(s)	19, 35, 518, 564
MflI	RGATCY	2 cut(s)	298, 410
MhlI	GDGCHC	2 cut(s)	86, 526
MluCI	AATT	4 cut(s)	399, 428, 493, 568
MnlI	CCTC	4 cut(s)	137, 266, 512, 556
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	358
MspI	CCGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	31, 113
NcoI	CCATGG	3 cut(s)	166, 306, 414
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	5 cut(s)	11, 40, 146, 298, 410
NlaIII	CATG	6 cut(s)	170, 310, 418, 457, 544, 567
NlaIV	GGNNCC	3 cut(s)	194, 337, 412
NsbI	TGCGCA	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	457
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	33
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	86
PspN4I	GGNNCC	3 cut(s)	194, 337, 412
PsuI	RGATCY	2 cut(s)	298, 410
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	5 cut(s)	11, 40, 146, 298, 410
SduI	GDGCHC	2 cut(s)	86, 526
SetI	ASST	7 cut(s)	33, 86, 209, 247, 277, 489, 596
SfaNI	GCATC	2 cut(s)	103, 372
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SpeI	ACTAGT	2 cut(s)	176, 578
Sse9I	AATT	4 cut(s)	399, 428, 493, 568
SsiI	CCGC	2 cut(s)	34, 385
SspMI	CTAG	3 cut(s)	177, 579, 595
SstI	GAGCTC	1 cut(s)	86
StyI	CCWWGG	4 cut(s)	166, 306, 312, 414
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	4 cut(s)	399, 428, 493, 568
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	394
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	351, 407, 412
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	384
XapI	RAATTY	2 cut(s)	493, 568
XceI	RCATGY	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	3 cut(s)	177, 579, 595
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.