No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42710 AT5G42710 AT5G42710 |
| fragaria_vesca | FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 FvH4_2g39870 |
| malus_domestica | MD08G1035200.v1.1 MD15G1031800.v1.1 |
| prunus_persica | Prupe.1G380200_v2.0.a1 |
| pyrus_communis | pycom08g02780 pycom15g02750 |
| rosa_chinensis | RchiOBHm_Chr5g0052261 RchiOBHm_Chr6g0300941 |
| rosa_laevigata | RLG00000011289 RLG00000034832 RLG00000034833 |
| rosa_multiflora | Rmu_sc0006254.1_g000005 Rmu_sc0008947.1_g000011 Rmu_sc0008947.1_g000012 Rmu_sc0009513.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00028100 Rroxscaffold_7G00167300 |
| rosa_rugosa | Rorug05G0273400 Rorug06G0299600 Rorug06G0299600 Rorug06G0299700 |
| rosa_samantha | Rh5AG346200 Rh5BG356900 Rh5CG382200 Rh5CG382300 Rh5CG382400 Rh5DG372200 Rh6AG413200 Rh6AG413300 Rh6AG413400 Rh6AG413500 Rh6BG420400 Rh6BG420500 Rh6CG427900 Rh6CG428000 Rh6DG413200 Rh6DG413300 |
| rosa_wichuraiana | Rw5G032650 Rw5G032690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 48 |
| Acc65I | GGTACC | 1 cut(s) | 2128 |
| AccB1I | GGYRCC | 2 cut(s) | 566, 2128 |
| AccI | GTMKAC | 2 cut(s) | 603, 626 |
| AccII | CGCG | 3 cut(s) | 1058, 1226, 2330 |
| AciI | CCGC | 5 cut(s) | 192, 546, 743, 1056, 1683 |
| AclWI | GGATC | 5 cut(s) | 147, 160, 308, 1761, 2239 |
| AcsI | RAATTY | 2 cut(s) | 163, 1786 |
| AcuI | CTGAAG | 2 cut(s) | 303, 2362 |
| AcyI | GRCGYC | 1 cut(s) | 567 |
| AfaI | GTAC | 3 cut(s) | 533, 1362, 2130 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 857, 2019 |
| AflIII | ACRYGT | 2 cut(s) | 2236, 2250 |
| Alw21I | GWGCWC | 1 cut(s) | 472 |
| Alw26I | GTCTC | 7 cut(s) | 591, 751, 917, 1040, 1089, 1889, 2211 |
| AlwI | GGATC | 5 cut(s) | 147, 160, 308, 1761, 2239 |
| Ama87I | CYCGRG | 1 cut(s) | 2057 |
| AoxI | GGCC | 1 cut(s) | 508 |
| ApeKI | GCWGC | 3 cut(s) | 195, 661, 1279 |
| ApoI | RAATTY | 2 cut(s) | 163, 1786 |
| Asp718I | GGTACC | 1 cut(s) | 2128 |
| AspLEI | GCGC | 2 cut(s) | 49, 569 |
| AspS9I | GGNCC | 1 cut(s) | 2161 |
| AsuHPI | GGTGA | 1 cut(s) | 689 |
| AsuII | TTCGAA | 2 cut(s) | 8, 134 |
| AvaI | CYCGRG | 1 cut(s) | 2057 |
| AvaII | GGWCC | 1 cut(s) | 2161 |
| BamHI | GGATCC | 1 cut(s) | 152 |
| BanI | GGYRCC | 2 cut(s) | 566, 2128 |
| BanII | GRGCYC | 1 cut(s) | 472 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1830, 1862 |
| BbsI | GAAGAC | 3 cut(s) | 2046, 2250, 2368 |
| Bbv12I | GWGCWC | 1 cut(s) | 472 |
| BbvI | GCAGC | 3 cut(s) | 182, 648, 1291 |
| BccI | CCATC | 9 cut(s) | 883, 935, 1148, 1535, 1717, 1744, 1775, 2121, 2172 |
| BceAI | ACGGC | 1 cut(s) | 523 |
| BcoDI | GTCTC | 7 cut(s) | 591, 751, 917, 1040, 1089, 1889, 2211 |
| BfaI | CTAG | 4 cut(s) | 189, 896, 978, 1955 |
| BfoI | RGCGCY | 1 cut(s) | 570 |
| BglII | AGATCT | 4 cut(s) | 181, 365, 1455, 2407 |
| BisI | GCNGC | 5 cut(s) | 193, 196, 662, 1280, 1683 |
| BlsI | GCNGC | 5 cut(s) | 194, 197, 663, 1281, 1684 |
| Bme18I | GGWCC | 1 cut(s) | 2161 |
| BmeT110I | CYCGRG | 1 cut(s) | 2057 |
| BmgT120I | GGNCC | 1 cut(s) | 2161 |
| BmiI | GGNNCC | 3 cut(s) | 154, 568, 2130 |
| BmsI | GCATC | 5 cut(s) | 626, 688, 1620, 1732, 2313 |
| BpiI | GAAGAC | 3 cut(s) | 2046, 2250, 2368 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 936, 968 |
| Bpu10I | CCTNAGC | 1 cut(s) | 512 |
| Bpu14I | TTCGAA | 2 cut(s) | 8, 134 |
| BpuEI | CTTGAG | 1 cut(s) | 1608 |
| BsaAI | YACGTR | 1 cut(s) | 2251 |
| BsaHI | GRCGYC | 1 cut(s) | 567 |
| BsaI | GGTCTC | 1 cut(s) | 917 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 857, 2019 |
| Bse1I | ACTGG | 1 cut(s) | 2016 |
| BseGI | GGATG | 5 cut(s) | 67, 703, 1114, 1755, 2113 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 857, 2019 |
| BseMII | CTCAG | 5 cut(s) | 113, 612, 866, 1100, 2192 |
| BseNI | ACTGG | 1 cut(s) | 2016 |
| BseRI | GAGGAG | 3 cut(s) | 704, 707, 1243 |
| BseXI | GCAGC | 3 cut(s) | 182, 648, 1291 |
| Bsh1236I | CGCG | 3 cut(s) | 1058, 1226, 2330 |
| BshFI | GGCC | 1 cut(s) | 510 |
| BshNI | GGYRCC | 2 cut(s) | 566, 2128 |
| BsiHKAI | GWGCWC | 1 cut(s) | 472 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2057 |
| BslFI | GGGAC | 4 cut(s) | 414, 906, 1679, 2315 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 857, 2019 |
| BsmAI | GTCTC | 7 cut(s) | 591, 751, 917, 1040, 1089, 1889, 2211 |
| BsmFI | GGGAC | 4 cut(s) | 414, 906, 1679, 2315 |
| BsnI | GGCC | 1 cut(s) | 510 |
| Bso31I | GGTCTC | 1 cut(s) | 917 |
| BsoBI | CYCGRG | 1 cut(s) | 2057 |
| Bsp119I | TTCGAA | 2 cut(s) | 8, 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp68I | TCGCGA | 1 cut(s) | 1226 |
| BspACI | CCGC | 5 cut(s) | 192, 546, 743, 1056, 1683 |
| BspANI | GGCC | 1 cut(s) | 510 |
| BspCNI | CTCAG | 5 cut(s) | 112, 613, 865, 1099, 2193 |
| BspFNI | CGCG | 3 cut(s) | 1058, 1226, 2330 |
| BspHI | TCATGA | 1 cut(s) | 2005 |
| BspLI | GGNNCC | 3 cut(s) | 154, 568, 2130 |
| BspPI | GGATC | 5 cut(s) | 147, 160, 308, 1761, 2239 |
| BspT104I | TTCGAA | 2 cut(s) | 8, 134 |
| BspT107I | GGYRCC | 2 cut(s) | 566, 2128 |
| BspTNI | GGTCTC | 1 cut(s) | 917 |
| BsrI | ACTGG | 1 cut(s) | 2016 |
| BssNAI | GTATAC | 1 cut(s) | 627 |
| BssNI | GRCGYC | 1 cut(s) | 567 |
| Bst1107I | GTATAC | 1 cut(s) | 627 |
| Bst4CI | ACNGT | 4 cut(s) | 585, 1580, 1810, 2213 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 594, 2388 |
| BstACI | GRCGYC | 1 cut(s) | 567 |
| BstBAI | YACGTR | 1 cut(s) | 2251 |
| BstBI | TTCGAA | 2 cut(s) | 8, 134 |
| BstC8I | GCNNGC | 1 cut(s) | 2328 |
| BstDEI | CTNAG | 7 cut(s) | 99, 512, 621, 852, 1086, 1256, 2201 |
| BstF5I | GGATG | 5 cut(s) | 67, 703, 1114, 1755, 2113 |
| BstFNI | CGCG | 3 cut(s) | 1058, 1226, 2330 |
| BstH2I | RGCGCY | 1 cut(s) | 570 |
| BstHHI | GCGC | 2 cut(s) | 49, 569 |
| BstMAI | GTCTC | 7 cut(s) | 591, 751, 917, 1040, 1089, 1889, 2211 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 299, 1729 |
| BstNSI | RCATGY | 3 cut(s) | 501, 1611, 2240 |
| BstUI | CGCG | 3 cut(s) | 1058, 1226, 2330 |
| BstV1I | GCAGC | 3 cut(s) | 182, 648, 1291 |
| BstV2I | GAAGAC | 3 cut(s) | 2046, 2250, 2368 |
| BstX2I | RGATCY | 6 cut(s) | 152, 181, 313, 365, 1455, 2407 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 577 |
| BstYI | RGATCY | 6 cut(s) | 152, 181, 313, 365, 1455, 2407 |
| BstZ17I | GTATAC | 1 cut(s) | 627 |
| BsuRI | GGCC | 1 cut(s) | 510 |
| BtsCI | GGATG | 5 cut(s) | 67, 703, 1114, 1755, 2113 |
| BtsIMutI | CAGTG | 2 cut(s) | 2023, 2386 |
| BtuMI | TCGCGA | 1 cut(s) | 1226 |
| Cac8I | GCNNGC | 1 cut(s) | 2328 |
| CciI | TCATGA | 1 cut(s) | 2005 |
| CfoI | GCGC | 2 cut(s) | 49, 569 |
| Cfr13I | GGNCC | 1 cut(s) | 2161 |
| Csp6I | GTAC | 3 cut(s) | 532, 1361, 2129 |
| CviQI | GTAC | 3 cut(s) | 532, 1361, 2129 |
| DdeI | CTNAG | 7 cut(s) | 99, 512, 621, 852, 1086, 1256, 2201 |
| DinI | GGCGCC | 1 cut(s) | 568 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 594, 2388 |
| EarI | CTCTTC | 3 cut(s) | 14, 594, 2388 |
| EciI | GGCGGA | 1 cut(s) | 758 |
| Ecl136II | GAGCTC | 1 cut(s) | 470 |
| Eco24I | GRGCYC | 1 cut(s) | 472 |
| Eco31I | GGTCTC | 1 cut(s) | 917 |
| Eco32I | GATATC | 1 cut(s) | 748 |
| Eco47I | GGWCC | 1 cut(s) | 2161 |
| Eco53kI | GAGCTC | 1 cut(s) | 470 |
| Eco57I | CTGAAG | 2 cut(s) | 303, 2362 |
| Eco88I | CYCGRG | 1 cut(s) | 2057 |
| EcoICRI | GAGCTC | 1 cut(s) | 470 |
| EcoRV | GATATC | 1 cut(s) | 748 |
| EcoT22I | ATGCAT | 3 cut(s) | 130, 1613, 2420 |
| EcoT38I | GRGCYC | 1 cut(s) | 472 |
| EgeI | GGCGCC | 1 cut(s) | 568 |
| EheI | GGCGCC | 1 cut(s) | 568 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 72, 104, 352, 384, 1123, 1155, 1382, 1414 |
| FaqI | GGGAC | 4 cut(s) | 414, 906, 1679, 2315 |
| FauI | CCCGC | 1 cut(s) | 539 |
| FblI | GTMKAC | 2 cut(s) | 603, 626 |
| Fnu4HI | GCNGC | 5 cut(s) | 193, 196, 662, 1280, 1683 |
| FokI | GGATG | 5 cut(s) | 74, 710, 1121, 1762, 2100 |
| FriOI | GRGCYC | 1 cut(s) | 472 |
| Fsp4HI | GCNGC | 5 cut(s) | 193, 196, 662, 1280, 1683 |
| FspBI | CTAG | 4 cut(s) | 189, 896, 978, 1955 |
| FspI | TGCGCA | 1 cut(s) | 48 |
| GlaI | GCGC | 2 cut(s) | 48, 568 |
| GluI | GCNGC | 5 cut(s) | 193, 196, 662, 1280, 1683 |
| HaeII | RGCGCY | 1 cut(s) | 570 |
| HaeIII | GGCC | 1 cut(s) | 510 |
| HhaI | GCGC | 2 cut(s) | 49, 569 |
| Hin1I | GRCGYC | 1 cut(s) | 567 |
| Hin6I | GCGC | 2 cut(s) | 47, 567 |
| HinP1I | GCGC | 2 cut(s) | 47, 567 |
| HincII | GTYRAC | 2 cut(s) | 1017, 1235 |
| HindII | GTYRAC | 2 cut(s) | 1017, 1235 |
| HindIII | AAGCTT | 2 cut(s) | 514, 1396 |
| HphI | GGTGA | 1 cut(s) | 689 |
| Hpy166II | GTNNAC | 8 cut(s) | 604, 627, 1017, 1235, 1740, 1847, 2269, 2384 |
| Hpy8I | GTNNAC | 8 cut(s) | 604, 627, 1017, 1235, 1740, 1847, 2269, 2384 |
| HpyCH4III | ACNGT | 4 cut(s) | 585, 1580, 1810, 2213 |
| HpyCH4IV | ACGT | 1 cut(s) | 2250 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 299, 1729 |
| HpyF3I | CTNAG | 7 cut(s) | 99, 512, 621, 852, 1086, 1256, 2201 |
| HpySE526I | ACGT | 1 cut(s) | 2250 |
| Hsp92I | GRCGYC | 1 cut(s) | 567 |
| HspAI | GCGC | 2 cut(s) | 47, 567 |
| KasI | GGCGCC | 1 cut(s) | 566 |
| KpnI | GGTACC | 1 cut(s) | 2132 |
| LmnI | GCTCC | 4 cut(s) | 467, 1711, 1768, 2022 |
| LpnPI | CCDG | 8 cut(s) | 78, 169, 279, 306, 1536, 1617, 1827, 2029 |
| Lsp1109I | GCAGC | 3 cut(s) | 182, 648, 1291 |
| LweI | GCATC | 5 cut(s) | 626, 688, 1620, 1732, 2313 |
| MaeI | CTAG | 4 cut(s) | 189, 896, 978, 1955 |
| MaeII | ACGT | 1 cut(s) | 2250 |
| MaeIII | GTNAC | 3 cut(s) | 1306, 1557, 1568 |
| MflI | RGATCY | 6 cut(s) | 152, 181, 313, 365, 1455, 2407 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| MluCI | AATT | 4 cut(s) | 163, 1668, 1786, 1946 |
| Mly113I | GGCGCC | 1 cut(s) | 567 |
| MlyI | GAGTC | 6 cut(s) | 1042, 1240, 1359, 1658, 1701, 2379 |
| MmeI | TCCRAC | 7 cut(s) | 39, 558, 1217, 1223, 1836, 2235, 2291 |
| Mph1103I | ATGCAT | 3 cut(s) | 130, 1613, 2420 |
| MseI | TTAA | 6 cut(s) | 147, 492, 771, 1446, 1530, 2105 |
| MvnI | CGCG | 3 cut(s) | 1058, 1226, 2330 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 299, 1729 |
| NarI | GGCGCC | 1 cut(s) | 567 |
| NlaIV | GGNNCC | 3 cut(s) | 154, 568, 2130 |
| NruI | TCGCGA | 1 cut(s) | 1226 |
| NsbI | TGCGCA | 1 cut(s) | 48 |
| NsiI | ATGCAT | 3 cut(s) | 130, 1613, 2420 |
| NspI | RCATGY | 3 cut(s) | 501, 1611, 2240 |
| NspV | TTCGAA | 2 cut(s) | 8, 134 |
| PaeR7I | CTCGAG | 1 cut(s) | 2057 |
| PagI | TCATGA | 1 cut(s) | 2005 |
| PciI | ACATGT | 1 cut(s) | 2236 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1879, 2327, 2334 |
| PfeI | GAWTC | 9 cut(s) | 436, 481, 654, 865, 949, 1112, 1189, 2047, 2318 |
| PkrI | GCNGC | 5 cut(s) | 194, 197, 663, 1281, 1684 |
| PleI | GAGTC | 6 cut(s) | 1042, 1239, 1359, 1658, 1700, 2379 |
| PluTI | GGCGCC | 1 cut(s) | 570 |
| PpsI | GAGTC | 6 cut(s) | 1042, 1239, 1359, 1658, 1700, 2379 |
| Ppu21I | YACGTR | 1 cut(s) | 2251 |
| PscI | ACATGT | 1 cut(s) | 2236 |
| Psp124BI | GAGCTC | 1 cut(s) | 472 |
| PspN4I | GGNNCC | 3 cut(s) | 154, 568, 2130 |
| PspPI | GGNCC | 1 cut(s) | 2161 |
| PspXI | VCTCGAGB | 1 cut(s) | 2057 |
| PsuI | RGATCY | 6 cut(s) | 152, 181, 313, 365, 1455, 2407 |
| RruI | TCGCGA | 1 cut(s) | 1226 |
| RsaI | GTAC | 3 cut(s) | 533, 1362, 2130 |
| RsaNI | GTAC | 3 cut(s) | 532, 1361, 2129 |
| SacI | GAGCTC | 1 cut(s) | 472 |
| SaqAI | TTAA | 6 cut(s) | 147, 492, 771, 1446, 1530, 2105 |
| SatI | GCNGC | 5 cut(s) | 193, 196, 662, 1280, 1683 |
| Sau96I | GGNCC | 1 cut(s) | 2161 |
| SchI | GAGTC | 6 cut(s) | 1042, 1240, 1359, 1658, 1701, 2379 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SfaNI | GCATC | 5 cut(s) | 626, 688, 1620, 1732, 2313 |
| SfoI | GGCGCC | 1 cut(s) | 568 |
| Sfr274I | CTCGAG | 1 cut(s) | 2057 |
| SfuI | TTCGAA | 2 cut(s) | 8, 134 |
| SinI | GGWCC | 1 cut(s) | 2161 |
| SlaI | CTCGAG | 1 cut(s) | 2057 |
| SmlI | CTYRAG | 2 cut(s) | 1623, 2057 |
| SmoI | CTYRAG | 2 cut(s) | 1623, 2057 |
| Sse9I | AATT | 4 cut(s) | 163, 1668, 1786, 1946 |
| SsiI | CCGC | 5 cut(s) | 192, 546, 743, 1056, 1683 |
| SspDI | GGCGCC | 1 cut(s) | 566 |
| SspMI | CTAG | 4 cut(s) | 189, 896, 978, 1955 |
| SstI | GAGCTC | 1 cut(s) | 472 |
| TaaI | ACNGT | 4 cut(s) | 585, 1580, 1810, 2213 |
| TaiI | ACGT | 1 cut(s) | 2253 |
| TasI | AATT | 4 cut(s) | 163, 1668, 1786, 1946 |
| TauI | GCSGC | 2 cut(s) | 195, 1685 |
| TfiI | GAWTC | 9 cut(s) | 436, 481, 654, 865, 949, 1112, 1189, 2047, 2318 |
| Tru1I | TTAA | 6 cut(s) | 147, 492, 771, 1446, 1530, 2105 |
| Tru9I | TTAA | 6 cut(s) | 147, 492, 771, 1446, 1530, 2105 |
| TscAI | CASTG | 2 cut(s) | 2023, 2386 |
| TseI | GCWGC | 3 cut(s) | 195, 661, 1279 |
| TspGWI | ACGGA | 1 cut(s) | 655 |
| TspRI | CASTG | 2 cut(s) | 2023, 2386 |
| VpaK11BI | GGWCC | 1 cut(s) | 2161 |
| XapI | RAATTY | 2 cut(s) | 163, 1786 |
| XbaI | TCTAGA | 1 cut(s) | 1954 |
| XceI | RCATGY | 3 cut(s) | 501, 1611, 2240 |
| XhoI | CTCGAG | 1 cut(s) | 2057 |
| XmiI | GTMKAC | 2 cut(s) | 603, 626 |
| XspI | CTAG | 4 cut(s) | 189, 896, 978, 1955 |
| Zsp2I | ATGCAT | 3 cut(s) | 130, 1613, 2420 |