MD15G1130700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016763
Physical Location & Seq
Forward (+)
9442319 .. 9442756
438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1130700.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGCAAACCCACGTGAGAAAATGCCCTCGGTTCACGAATTTCCATCGCCATTGGAAGTGAACGATGAAGAAATAGATCCATCTTTTTCATGCGGTTGTTTATGGGCACTGTGTGGAAGAAGGATTGGAGCACGGAGATATCTGCTACAACAACAAGAAGGAGAACAAGCGAAAGAGAGTTGGTTGGTGGAGAAGGTTAAGAAAGCGCGAGAAATTTCGGAGGTTTTGGCAGGACCAAAGTGGAAGAACTTCATCCGATCTTTTAGTACGATATACAAGAAAAGAAGGGTGCAGTTTCAGTACGATCCACAGAGTTACGCGCTTAATTTCGATGACGGAAATGTTGATAGGGAAGCAGAGGGTGCTGCTGCTGCATACCATCATTTTTCGAATAGTGGATCATATGCAGCGTCACAAGGGATGAATGCCAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.54

Weight (kDa)

7.71

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016763)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28310
malus_domestica MD15G1130700.v1.1
prunus_persica Prupe.1G486100_v2.0.a1
pyrus_communis pycom08g13290 pycom15g11780
rosa_chinensis RchiOBHm_Chr6g0297221
rosa_laevigata RLG00000011620
rosa_multiflora Rmu_sc0013249.1_g000002
rosa_roxburghii Rroxscaffold_7G00170770
rosa_rugosa Rorug06G0270000
rosa_samantha Rh6AG381100 Rh6BG389300 Rh6CG394500 Rh6DG381200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 208, 320
AciI CCGC 1 cut(s) 93
AclWI GGATC 3 cut(s) 71, 299, 406
AcsI RAATTY 2 cut(s) 38, 213
AcvI CACGTG 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 2 cut(s) 268, 302
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 3 cut(s) 71, 299, 406
ApeKI GCWGC 4 cut(s) 365, 368, 371, 407
ApoI RAATTY 2 cut(s) 38, 213
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 208, 322
AspS9I GGNCC 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 389
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 109
BbrPI CACGTG 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 4 cut(s) 352, 355, 358, 419
BccI CCATC 3 cut(s) 52, 88, 387
BisI GCNGC 4 cut(s) 366, 369, 372, 408
BlsI GCNGC 4 cut(s) 367, 370, 373, 409
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 252, 426
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 4 cut(s) 352, 355, 358, 419
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 2 cut(s) 208, 320
BsiHKAI GWGCWC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 430
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 109, 133
Bsp143I GATC 4 cut(s) 76, 257, 304, 398
BspACI CCGC 1 cut(s) 93
BspFNI CGCG 2 cut(s) 208, 320
BspPI GGATC 3 cut(s) 71, 299, 406
BspT104I TTCGAA 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 76, 257, 304, 398
Bst4CI ACNGT 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 389
BstF5I GGATG 2 cut(s) 252, 426
BstFNI CGCG 2 cut(s) 208, 320
BstHHI GCGC 2 cut(s) 208, 322
BstKTI GATC 4 cut(s) 79, 260, 307, 401
BstMBI GATC 4 cut(s) 76, 257, 304, 398
BstMWI GCNNNNNNNGC 2 cut(s) 362, 371
BstSLI GKGCMC 1 cut(s) 109
BstUI CGCG 2 cut(s) 208, 320
BstV1I GCAGC 4 cut(s) 352, 355, 358, 419
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 252, 426
BtsIMutI CAGTG 1 cut(s) 107
CfoI GCGC 2 cut(s) 208, 322
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 399
Csp6I GTAC 2 cut(s) 267, 301
CviAII CATG 1 cut(s) 90
CviQI GTAC 2 cut(s) 267, 301
DpnI GATC 4 cut(s) 78, 259, 306, 400
DpnII GATC 4 cut(s) 76, 257, 304, 398
DraIII CACNNNGTG 1 cut(s) 113
Eco32I GATATC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 140
FaeI CATG 1 cut(s) 93
FaiI YATR 6 cut(s) 91, 103, 274, 376, 403, 405
FatI CATG 1 cut(s) 89
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 366, 369, 372, 408
FokI GGATG 2 cut(s) 239, 433
Fsp4HI GCNGC 4 cut(s) 366, 369, 372, 408
GlaI GCGC 2 cut(s) 207, 321
GluI GCNGC 4 cut(s) 366, 369, 372, 408
HgaI GACGC 1 cut(s) 399
HhaI GCGC 2 cut(s) 208, 322
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 2 cut(s) 206, 320
HinP1I GCGC 2 cut(s) 206, 320
Hpy166II GTNNAC 2 cut(s) 34, 61
Hpy188I TCNGA 3 cut(s) 220, 257, 437
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 34, 61
HpyAV CCTTC 4 cut(s) 114, 152, 187, 279
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 292, 374, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 371
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 2 cut(s) 206, 320
Kzo9I GATC 4 cut(s) 76, 257, 304, 398
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 1 cut(s) 216
Lsp1109I GCAGC 4 cut(s) 352, 355, 358, 419
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 314, 411
MalI GATC 4 cut(s) 78, 259, 306, 400
MboI GATC 4 cut(s) 76, 257, 304, 398
MboII GAAGA 3 cut(s) 80, 129, 256
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 109, 133
MluCI AATT 3 cut(s) 38, 213, 325
MnlI CCTC 3 cut(s) 37, 214, 352
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 2 cut(s) 198, 324
Mva1269I GAATGC 1 cut(s) 430
MvnI CGCG 2 cut(s) 208, 320
MwoI GCNNNNNNNGC 2 cut(s) 362, 371
NdeI CATATG 1 cut(s) 403
NdeII GATC 4 cut(s) 76, 257, 304, 398
NlaIII CATG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 411
NspV TTCGAA 1 cut(s) 389
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 248
PkrI GCNGC 4 cut(s) 367, 370, 373, 409
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 14
PspCI CACGTG 1 cut(s) 14
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 268, 302
RsaNI GTAC 2 cut(s) 267, 301
SaqAI TTAA 2 cut(s) 198, 324
SatI GCNGC 4 cut(s) 366, 369, 372, 408
Sau3AI GATC 4 cut(s) 76, 257, 304, 398
Sau96I GGNCC 1 cut(s) 233
SduI GDGCHC 2 cut(s) 109, 133
SetI ASST 3 cut(s) 16, 198, 225
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 1 cut(s) 233
Sse9I AATT 3 cut(s) 38, 213, 325
SsiI CCGC 1 cut(s) 93
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 330, 389
TasI AATT 3 cut(s) 38, 213, 325
Tru1I TTAA 2 cut(s) 198, 324
Tru9I TTAA 2 cut(s) 198, 324
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 4 cut(s) 365, 368, 371, 407
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 4 cut(s) 78, 81, 241, 437
TspGWI ACGGA 2 cut(s) 148, 351
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 2 cut(s) 38, 213
XmnI GAANNNNTTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.