pycom08g13290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0016763
Physical Location & Seq
Forward (+)
11921799 .. 11922248
450 bp
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UTR
Exon/CDS
Intron
pycom08g13290.1

Sequence Viewer

Length: 450 bp
ATGGCAAACCCACATGAGAATGTGTCCTCGGTTTACGATTTTCCATCGTCATTGGAGGAGAAGGATGAGTACTACGATGAAGAAATAGATCCATCTTCTTCATGTGGTTGTTTATGGGGATTGTGCGGAAGGAGGACTGGAGCACAGAGACATCTGCTGCGACCACAACAAGGAGATCAAGAGAGTTGGTTGGCGGAGAAGGTGAAGAAAGCGAGAGAGTTTTTGGAGGTTTTGGCAGGACCGAAGTGGAAGAACTTCATCCGATCGTTTAGTACGATTTACAAGAAAAAAAGGGTGCAGTTTCACTATGATCCACGGAGTTATGCGCTTAATTTCGATGACGGGAATGTTTATAGGGAAGCAGAAGGGGCTGCTGCCGCTGCATACCTTCATTTTTCAAATGGCGGATCATACGCAGCGTCACAAGGGATGAACAATGCCGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.95

Weight (kDa)

5.81

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016763)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28310
malus_domestica MD15G1130700.v1.1
prunus_persica Prupe.1G486100_v2.0.a1
pyrus_communis pycom08g13290 pycom15g11780
rosa_chinensis RchiOBHm_Chr6g0297221
rosa_laevigata RLG00000011620
rosa_multiflora Rmu_sc0013249.1_g000002
rosa_roxburghii Rroxscaffold_7G00170770
rosa_rugosa Rorug06G0270000
rosa_samantha Rh6AG381100 Rh6BG389300 Rh6CG394500 Rh6DG381200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 126, 194, 378, 405
AclWI GGATC 3 cut(s) 83, 305, 415
AfaI GTAC 2 cut(s) 71, 274
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 399
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 3 cut(s) 83, 305, 415
ApeKI GCWGC 5 cut(s) 157, 371, 374, 380, 416
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 5 cut(s) 144, 358, 361, 367, 428
BccI CCATC 2 cut(s) 52, 100
BcoDI GTCTC 1 cut(s) 142
BisI GCNGC 6 cut(s) 158, 372, 375, 378, 381, 417
BlsI GCNGC 6 cut(s) 159, 373, 376, 379, 382, 418
BmcAI AGTACT 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 27, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 27, 314
BseGI GGATG 3 cut(s) 70, 258, 435
BseLI CCNNNNNNNGG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 144, 358, 361, 367, 428
BsgI GTGCAG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 5 cut(s) 88, 175, 263, 310, 407
BspACI CCGC 4 cut(s) 126, 194, 378, 405
BspPI GGATC 3 cut(s) 83, 305, 415
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 27, 314
BssMI GATC 5 cut(s) 88, 175, 263, 310, 407
BstDSI CCRYGG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 70, 258, 435
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 5 cut(s) 91, 178, 266, 313, 410
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 5 cut(s) 88, 175, 263, 310, 407
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 3 cut(s) 368, 377, 380
BstV1I GCAGC 5 cut(s) 144, 358, 361, 367, 428
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 3 cut(s) 70, 258, 435
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 408
Csp6I GTAC 2 cut(s) 70, 273
CviAII CATG 2 cut(s) 14, 102
CviJI RGCY 1 cut(s) 371
CviKI_1 RGCY 1 cut(s) 371
CviQI GTAC 2 cut(s) 70, 273
DpnI GATC 5 cut(s) 90, 177, 265, 312, 409
DpnII GATC 5 cut(s) 88, 175, 263, 310, 407
EciI GGCGGA 2 cut(s) 209, 420
Eco47I GGWCC 1 cut(s) 239
FaeI CATG 2 cut(s) 17, 105
FaiI YATR 8 cut(s) 15, 103, 115, 309, 324, 354, 385, 412
FatI CATG 2 cut(s) 13, 101
Fnu4HI GCNGC 6 cut(s) 158, 372, 375, 378, 381, 417
FokI GGATG 3 cut(s) 77, 245, 442
Fsp4HI GCNGC 6 cut(s) 158, 372, 375, 378, 381, 417
GlaI GCGC 1 cut(s) 327
GluI GCNGC 6 cut(s) 158, 372, 375, 378, 381, 417
GsuI CTGGAG 1 cut(s) 159
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 328
Hin1II CATG 2 cut(s) 17, 105
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 263, 449
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 55, 123, 193, 359, 398
HpyCH4V TGCA 2 cut(s) 298, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 377, 380
Hsp92II CATG 2 cut(s) 17, 105
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 5 cut(s) 88, 175, 263, 310, 407
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 2 cut(s) 123, 222
Lsp1109I GCAGC 5 cut(s) 144, 358, 361, 367, 428
MaeIII GTNAC 1 cut(s) 420
MalI GATC 5 cut(s) 90, 177, 265, 312, 409
MboI GATC 5 cut(s) 88, 175, 263, 310, 407
MboII GAAGA 5 cut(s) 87, 90, 92, 217, 262
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 331
MnlI CCTC 4 cut(s) 37, 49, 126, 220
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 368, 377, 380
NdeII GATC 5 cut(s) 88, 175, 263, 310, 407
NlaIII CATG 2 cut(s) 17, 105
NmuCI GTSAC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 254
PkrI GCNGC 6 cut(s) 159, 373, 376, 379, 382, 418
Ple19I CGATCG 1 cut(s) 266
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 88
PvuI CGATCG 1 cut(s) 266
RsaI GTAC 2 cut(s) 71, 274
RsaNI GTAC 2 cut(s) 70, 273
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 6 cut(s) 158, 372, 375, 378, 381, 417
Sau3AI GATC 5 cut(s) 88, 175, 263, 310, 407
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 71
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 204, 231, 390
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 1 cut(s) 331
SsiI CCGC 4 cut(s) 126, 194, 378, 405
TaqI TCGA 1 cut(s) 336
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 5 cut(s) 157, 371, 374, 380, 416
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 5 cut(s) 90, 93, 247, 380, 446
TspGWI ACGGA 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 254
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.