pycom15g11780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016763
Physical Location & Seq
Forward (+)
7969394 .. 7969843
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11780.1

Sequence Viewer

Length: 450 bp
ATGGCAAACCCACGTGAAAAAATGCCCTCGGTTCACGAATTTCCATCGCCATTGGAAGTGAACGATGAGTACTACGATGAAGAAATAGATCCATCTTTTTCATGCGGTTGTTTATGGGTACTGTGTGGAAGAAGGATTGGAGCACGGAGATATCTGCTGCAACAACAAGAAGGAGAACAAGCGAAAGAGAGTTGGTTGGTGGAGAAGGTTAAGAAAGCGCGAGAAATTTCGGAGGTTTTGGCAGGACCAAAGTGGAAGAACTTCATCCGATCTTTTAGTACGATATACAAGAAAAGAAGGGTGCAGTTTCAGTATGATCCACAGAGTTACGCGCTTAATTTTGATGACGGAAATGTTGATAGGGAAGCAGAGGGTGCTGCTGCTGCATACCATCATTTTTCGAATAGTGGATCATATGCAGCGTCACAAGGGATGAATGCCAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.14

Weight (kDa)

6.31

Isoelectric Point (pI)

65.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016763)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28310
malus_domestica MD15G1130700.v1.1
prunus_persica Prupe.1G486100_v2.0.a1
pyrus_communis pycom08g13290 pycom15g11780
rosa_chinensis RchiOBHm_Chr6g0297221
rosa_laevigata RLG00000011620
rosa_multiflora Rmu_sc0013249.1_g000002
rosa_roxburghii Rroxscaffold_7G00170770
rosa_rugosa Rorug06G0270000
rosa_samantha Rh6AG381100 Rh6BG389300 Rh6CG394500 Rh6DG381200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 220, 332
AciI CCGC 1 cut(s) 105
AclWI GGATC 3 cut(s) 83, 311, 418
AcsI RAATTY 2 cut(s) 38, 225
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 3 cut(s) 71, 120, 280
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 3 cut(s) 83, 311, 418
ApeKI GCWGC 5 cut(s) 157, 377, 380, 383, 419
ApoI RAATTY 2 cut(s) 38, 225
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 220, 334
AspS9I GGNCC 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 245
BbrPI CACGTG 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 5 cut(s) 144, 364, 367, 370, 431
BccI CCATC 3 cut(s) 52, 100, 399
BisI GCNGC 5 cut(s) 158, 378, 381, 384, 420
BlsI GCNGC 5 cut(s) 159, 379, 382, 385, 421
BmcAI AGTACT 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 264, 438
BseXI GCAGC 5 cut(s) 144, 364, 367, 370, 431
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 2 cut(s) 220, 332
BsiHKAI GWGCWC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 4 cut(s) 88, 269, 316, 410
BspACI CCGC 1 cut(s) 105
BspFNI CGCG 2 cut(s) 220, 332
BspPI GGATC 3 cut(s) 83, 311, 418
BspT104I TTCGAA 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 88, 269, 316, 410
Bst4CI ACNGT 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 401
BstF5I GGATG 2 cut(s) 264, 438
BstFNI CGCG 2 cut(s) 220, 332
BstHHI GCGC 2 cut(s) 220, 334
BstKTI GATC 4 cut(s) 91, 272, 319, 413
BstMBI GATC 4 cut(s) 88, 269, 316, 410
BstMWI GCNNNNNNNGC 2 cut(s) 374, 383
BstUI CGCG 2 cut(s) 220, 332
BstV1I GCAGC 5 cut(s) 144, 364, 367, 370, 431
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 264, 438
CfoI GCGC 2 cut(s) 220, 334
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 411
Csp6I GTAC 3 cut(s) 70, 119, 279
CviAII CATG 1 cut(s) 102
CviQI GTAC 3 cut(s) 70, 119, 279
DpnI GATC 4 cut(s) 90, 271, 318, 412
DpnII GATC 4 cut(s) 88, 269, 316, 410
Eco32I GATATC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 14
EcoRV GATATC 1 cut(s) 152
FaeI CATG 1 cut(s) 105
FaiI YATR 7 cut(s) 103, 115, 286, 315, 388, 415, 417
FatI CATG 1 cut(s) 101
FauNDI CATATG 1 cut(s) 415
Fnu4HI GCNGC 5 cut(s) 158, 378, 381, 384, 420
FokI GGATG 2 cut(s) 251, 445
Fsp4HI GCNGC 5 cut(s) 158, 378, 381, 384, 420
GlaI GCGC 2 cut(s) 219, 333
GluI GCNGC 5 cut(s) 158, 378, 381, 384, 420
HgaI GACGC 1 cut(s) 411
HhaI GCGC 2 cut(s) 220, 334
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 2 cut(s) 218, 332
HinP1I GCGC 2 cut(s) 218, 332
Hpy166II GTNNAC 2 cut(s) 34, 61
Hpy188I TCNGA 3 cut(s) 232, 269, 449
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 34, 61
HpyAV CCTTC 4 cut(s) 126, 164, 199, 291
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 160, 304, 386, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 383
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 2 cut(s) 218, 332
Kzo9I GATC 4 cut(s) 88, 269, 316, 410
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 1 cut(s) 228
Lsp1109I GCAGC 5 cut(s) 144, 364, 367, 370, 431
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 326, 423
MalI GATC 4 cut(s) 90, 271, 318, 412
MboI GATC 4 cut(s) 88, 269, 316, 410
MboII GAAGA 3 cut(s) 92, 141, 268
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 3 cut(s) 38, 225, 337
MnlI CCTC 3 cut(s) 37, 226, 364
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 210, 336
Mva1269I GAATGC 1 cut(s) 442
MvnI CGCG 2 cut(s) 220, 332
MwoI GCNNNNNNNGC 2 cut(s) 374, 383
NdeI CATATG 1 cut(s) 415
NdeII GATC 4 cut(s) 88, 269, 316, 410
NlaIII CATG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 423
NspV TTCGAA 1 cut(s) 401
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 5 cut(s) 159, 379, 382, 385, 421
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 14
PspCI CACGTG 1 cut(s) 14
PspPI GGNCC 1 cut(s) 245
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 3 cut(s) 71, 120, 280
RsaNI GTAC 3 cut(s) 70, 119, 279
SaqAI TTAA 2 cut(s) 210, 336
SatI GCNGC 5 cut(s) 158, 378, 381, 384, 420
Sau3AI GATC 4 cut(s) 88, 269, 316, 410
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 71
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 16, 210, 237
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 1 cut(s) 245
Sse9I AATT 3 cut(s) 38, 225, 337
SsiI CCGC 1 cut(s) 105
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 401
TasI AATT 3 cut(s) 38, 225, 337
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 2 cut(s) 210, 336
Tru9I TTAA 2 cut(s) 210, 336
TseFI GTSAC 1 cut(s) 423
TseI GCWGC 5 cut(s) 157, 377, 380, 383, 419
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 4 cut(s) 90, 93, 253, 449
TspGWI ACGGA 2 cut(s) 160, 363
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 2 cut(s) 38, 225
XmnI GAANNNNTTC 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.