Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009118

Physical Location & Seq

Genomic Coordinates Reverse (-)

15340072 .. 15346591

Gene Structure 6520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1194000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGAGGCCTCGCAGACCTCCAACGGGACGACCTTGAGGCATGCTTTCGGAAATGTCCTTTCCTTCTTCATCCTCATCCTGATCGGCGTTCTCGCATTTTCGATCCGGCTCTTCTCTGTCATAAAGTACGAGAGTGTAATTCACGAGTTTGATCCTTACTTCAATTACAGAGTCACTCAGTTTCTGACAAAGAATGGAATATACGATTTTTGGAACTGGTTTGATGATCGAACCTGGTATCCTCTTGGTCGTGTGATTGGTGGAACTGTTTACCCTGGATTGACCTTGACTGCAGGATCCCTATGGTGGTTTTTGAATTCTTTGAACATTCCTCTCTCTGTGGAAACTATTTGCGTGTTTACTGCACCTATATTCTCTGCTTTCACATCATGGGCGACTTACCTTCTGACTCGGGAAGTTAAGGGTGCTGGTGCTGGACTAACAGCTGCAGCTCTTATAGCCATGGTCCCATCATATATTTCTCGTTCTGTGGCTGGAAGCTATGACAATGAAGCTGTGGCTATTTTTGCTTTGATCTTCACTTTCTATCTATATATAAAGACACTGAATACAGGATCCCTCTTTTATGCAACTCTTAATGCCATAGCATACTTTTACATGGTTTGCTCTTGGGGAGGCTACACATTTATTATTAACCTGATTCCAATGCATGTGCTTCTCTGCATTGTAACTGGTCGCTACTCGTCTCGTTTATACATTGCATATGCTCCTCTTGTGGTCTTGGGAACGTTGTTAGCTGCTTTGGTGCCGGTAGTTGGATTCAATGCAGTCATGACATCAGAACATTTTGCATCCTTCTTGGTTTTTATTATTATACATGTGGTCGCTTTCGTATACTATATCAAAGGGATTCTCTCTCCAAAAATGTTCAAAGTGGCTGTCACACTTGTTATATCCATTGGCCTGCTCATATGTTTAGCTGTCGTAGCAGTACTCGTAGCTCTGGTAGCTTCAAGCCCAACAAAGGGATGGAGTGGGCGAAGTCTAAGTTTACTTGATCCAACTTATGCGAGCAAGTACATACCAATTATTGCTAGTGTTAGTGAGCACCAACCTCCTACTTGGCCCTCTTACTTTATGGACATTAATGTGTTGGCCTTCTTGGTTCCTGCTGGAATTATTGCATGCTTTTCACCTTTATCAGATGCAAGCTCTTTTGTGATCCTTTATATTGTAACGTCAGTATATTTCTCCGGAGTCATGGTGCGACTTATGCTGGTACTTGCTCCAGCAGCATGCATCTTGTCTGGGATTGCTCTCTCTGAAGCTTTTGAAGTTTTCACACGATCAATCAAGTTTCAGTTACCTGGTTTAACAGGGCCTTCCCAAGTTGATGCAGGGGAAACCAGTTCTGAGAGCACTGTACCCCAGAATGAAGTACCGAAAACAAAAACAGATAAAGGTGCTGACACATTAAAGGAGAGACCCTCAAGAAAGAACAGGAAGAAGGAAAAGGAACCAGTTGAAAAGCCTTCCATTAAATCTCAAATTGAAAAGAGGCTTCTGGTTTTACCATTTGAGGGATCCATTCTTGCTATTTTTCTCCTTGTGTTGCTTGGAGCCTTCTATGTGGTTCATTGTGTCTGGGCAGCAGCAGAAGCGTATTCAGCCCCATCTATTGTTCTAACATCTCAGTCACATGATGGTCTCCATGTTTTTGATGATTTTAGAGAGGCTTATGCGTGGTTAAGCCACAACACTGAGGTGGATGATAAAGTCGCGTCTTGGTGGGATTATGGGTACCAAACTACTGCCATGGCTAATCGCACTGTCATTGTTGACAACAACACATGGAACAACACACATATTGCAACTGTGGGTACTGCCATGTCTTCTCCAGAAAAGGCTGCTTGGGAAATTTTCAACTCATTGGATGTAAAATATGTCCTCGTTGTTTTTGGAGGTCTTGTTGGCTACCCCAGTGATGATATTAATAAGTTCTTGTGGATGGTCCGGATTGGAGGGGGCGTATTCCCTCATATCAAGGAACCTGATTACCTAAGGGATGGACAGTATCGCATTGACAATCAGGCGACCCCCACCATGCTAAATTCTCTCATGTACAAGCTCTGTTATTACAGGTTTGTGGACACAGACGGTAAAGGCTTTGATAGGGTGAGGCGAACAGAAATCGGAAAGAAATATTTCAAACTGACTCATTTTGAAGAGGTATTCACAACTCACCACTGGATGGTTCGGTTATACAAACTAAAACCGCCAAAGAACAGGATCCGAGGAAAGACAAAGAAGTCAAAAGCGAAATCAAGCTCAACGAGTAGCACAAAGAAGAGTGGAACGAAAAGGAATCCTTGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043687 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048583 GO:0050789 GO:0050896 GO:0065007 GO:0070085 GO:0071704 GO:0071944 GO:0080134 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

STT3

Protein Analysis

780

Amino Acids

86.94

Weight (kDa)

9.16

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STT3	PF02516	19 - 422	1.9e-104	Oligosaccharyl transferase STT3, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19690 AT5G19690
fragaria_vesca	FvH4_1g05850 FvH4_1g05850
malus_domestica	MD02G1060500.v1.1 MD15G1194000.v1.1
prunus_persica	Prupe.7G222300_v2.0.a1 Prupe.7G222300_v2.0.a1
pyrus_communis	pycom02g04970 pycom15g17380
rosa_chinensis	RchiOBHm_Chr2g0091511 RchiOBHm_Chr2g0091521 RchiOBHm_Chr2g0091601
rosa_laevigata	RLG00000016232
rosa_multiflora	Rmu_sc0002407.1_g000006
rosa_roxburghii	Rroxscaffold_2G00149970
rosa_rugosa	Rorug02G0018400
rosa_samantha	Rh2AG063600 Rh2BG063000 Rh2CG064700 Rh2DG063100
rosa_wichuraiana	Rw2G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2269
Acc65I	GGTACC	1 cut(s)	1761
AccB1I	GGYRCC	2 cut(s)	766, 1761
AccB7I	CCANNNNNTGG	1 cut(s)	2212
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	1 cut(s)	1742
AccIII	TCCGGA	2 cut(s)	1214, 1974
AciI	CCGC	1 cut(s)	2237
AclI	AACGTT	1 cut(s)	749
AcsI	RAATTY	3 cut(s)	316, 1878, 2071
AcuI	CTGAAG	1 cut(s)	1305
AfaI	GTAC	9 cut(s)	128, 954, 1040, 1242, 1386, 1401, 1763, 1843, 2084
AfiI	CCNNNNNNNGG	7 cut(s)	24, 306, 776, 985, 986, 1541, 2212
AflIII	ACRYGT	1 cut(s)	838
AjnI	CCWGG	3 cut(s)	233, 274, 1327
AleI	CACNNNNGTG	1 cut(s)	1724
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
Alw21I	GWGCWC	2 cut(s)	1071, 1382
Alw26I	GTCTC	3 cut(s)	711, 1438, 1673
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	411
Aor13HI	TCCGGA	2 cut(s)	1214, 1974
AoxI	GGCC	5 cut(s)	6, 922, 1085, 1116, 1340
ApeKI	GCWGC	7 cut(s)	446, 449, 758, 1253, 1610, 1613, 1868
ApoI	RAATTY	3 cut(s)	316, 1878, 2071
ArsI	GACNNNNNNTTYG	2 cut(s)	885, 917
AseI	ATTAAT	2 cut(s)	1107, 1953
Asp700I	GAANNNNTTC	1 cut(s)	2165
Asp718I	GGTACC	1 cut(s)	1761
AspS9I	GGNCC	4 cut(s)	466, 1086, 1340, 1972
AsuHPI	GGTGA	3 cut(s)	1146, 2149, 2195
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	466, 1972
AxyI	CCTNAGG	1 cut(s)	2021
BamHI	GGATCC	4 cut(s)	296, 575, 1544, 2250
BanI	GGYRCC	2 cut(s)	766, 1761
BauI	CACGAG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	1845
Bbv12I	GWGCWC	2 cut(s)	1071, 1382
BbvI	GCAGC	7 cut(s)	433, 461, 745, 1265, 1622, 1625, 1855
BccI	CCATC	7 cut(s)	478, 984, 1642, 1658, 1963, 2021, 2206
BciT130I	CCWGG	3 cut(s)	235, 276, 1329
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	711, 1438, 1673
BfaI	CTAG	1 cut(s)	1056
BfmI	CTRYAG	2 cut(s)	291, 447
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	7 cut(s)	447, 450, 759, 1254, 1611, 1614, 1869
BlsI	GCNGC	7 cut(s)	448, 451, 760, 1255, 1612, 1615, 1870
BmcAI	AGTACT	1 cut(s)	954
Bme1390I	CCNGG	3 cut(s)	235, 276, 1329
Bme18I	GGWCC	2 cut(s)	466, 1972
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	4 cut(s)	466, 1086, 1340, 1972
BmrFI	CCNGG	3 cut(s)	235, 276, 1329
BmrI	ACTGGG	1 cut(s)	1935
BmsI	GCATC	4 cut(s)	821, 1156, 1269, 1345
BmuI	ACTGGG	1 cut(s)	1935
BpiI	GAAGAC	1 cut(s)	1845
BplI	GAGNNNNNCTC	2 cut(s)	1433, 1465
BpmI	CTGGAG	2 cut(s)	1233, 1842
BpuEI	CTTGAG	2 cut(s)	55, 1435
BsaI	GGTCTC	2 cut(s)	1438, 1673
BsaJI	CCNNGG	5 cut(s)	274, 462, 1776, 2254, 2330
BsaWI	WCCGGW	2 cut(s)	1214, 1974
BsaXI	ACNNNNNCTCC	6 cut(s)	1209, 1239, 1914, 1944, 1974, 2004
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 306, 776, 985, 986, 1541, 2212
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	6 cut(s)	221, 697, 1368, 1481, 1941, 2213
Bse21I	CCTNAGG	1 cut(s)	2021
Bse3DI	GCAATG	1 cut(s)	717
BseAI	TCCGGA	2 cut(s)	1214, 1974
BseBI	CCWGG	3 cut(s)	235, 276, 1329
BseDI	CCNNGG	5 cut(s)	274, 462, 1776, 2254, 2330
BseGI	GGATG	9 cut(s)	69, 75, 812, 995, 1735, 1900, 1974, 2032, 2217
BseLI	CCNNNNNNNGG	7 cut(s)	24, 306, 776, 985, 986, 1541, 2212
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	4 cut(s)	191, 1365, 1667, 1713
BseNI	ACTGG	6 cut(s)	221, 697, 1368, 1481, 1941, 2213
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	7 cut(s)	433, 461, 745, 1265, 1622, 1625, 1855
BsgI	GTGCAG	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	1742
BshFI	GGCC	5 cut(s)	8, 924, 1087, 1118, 1342
BshNI	GGYRCC	2 cut(s)	766, 1761
BsiHKAI	GWGCWC	2 cut(s)	1071, 1382
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	4 cut(s)	106, 770, 1215, 1975
BslFI	GGGAC	2 cut(s)	40, 452
BslI	CCNNNNNNNGG	7 cut(s)	24, 306, 776, 985, 986, 1541, 2212
BsmAI	GTCTC	3 cut(s)	711, 1438, 1673
BsmBI	CGTCTC	1 cut(s)	711
BsmFI	GGGAC	2 cut(s)	40, 452
BsnI	GGCC	5 cut(s)	8, 924, 1087, 1118, 1342
Bso31I	GGTCTC	2 cut(s)	1438, 1673
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	1071, 1382
Bsp13I	TCCGGA	2 cut(s)	1214, 1974
Bsp1407I	TGTACA	1 cut(s)	2082
Bsp19I	CCATGG	2 cut(s)	462, 1776
BspACI	CCGC	1 cut(s)	2237
BspANI	GGCC	5 cut(s)	8, 924, 1087, 1118, 1342
BspCNI	CTCAG	4 cut(s)	190, 1366, 1666, 1714
BspEI	TCCGGA	2 cut(s)	1214, 1974
BspFNI	CGCG	1 cut(s)	1742
BspHI	TCATGA	1 cut(s)	792
BspMAI	CTGCAG	2 cut(s)	295, 451
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	766, 1761
BspTNI	GGTCTC	2 cut(s)	1438, 1673
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	769
BsrGI	TGTACA	1 cut(s)	2082
BsrI	ACTGG	6 cut(s)	221, 697, 1368, 1481, 1941, 2213
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	5 cut(s)	274, 462, 1776, 2254, 2330
BssNAI	GTATAC	1 cut(s)	856
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	3 cut(s)	462, 1776, 2330
Bst1107I	GTATAC	1 cut(s)	856
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	3 cut(s)	235, 276, 1329
Bst4CI	ACNGT	6 cut(s)	268, 1384, 1792, 1837, 2034, 2120
Bst6I	CTCTTC	3 cut(s)	116, 2181, 2303
BstAUI	TGTACA	1 cut(s)	2082
BstC8I	GCNNGC	6 cut(s)	42, 926, 1033, 1147, 1171, 1258
BstDEI	CTNAG	6 cut(s)	177, 1007, 1374, 1653, 1722, 2021
BstDSI	CCRYGG	2 cut(s)	462, 1776
BstF5I	GGATG	9 cut(s)	69, 75, 812, 995, 1735, 1900, 1974, 2032, 2217
BstFNI	CGCG	1 cut(s)	1742
BstMAI	GTCTC	3 cut(s)	711, 1438, 1673
BstMWI	GCNNNNNNNGC	8 cut(s)	458, 527, 947, 968, 1234, 1253, 1619, 1628
BstNI	CCWGG	3 cut(s)	235, 276, 1329
BstNSI	RCATGY	5 cut(s)	44, 674, 842, 1149, 1260
BstSCI	CCNGG	3 cut(s)	233, 274, 1327
BstSFI	CTRYAG	2 cut(s)	291, 447
BstUI	CGCG	1 cut(s)	1742
BstV1I	GCAGC	7 cut(s)	433, 461, 745, 1265, 1622, 1625, 1855
BstV2I	GAAGAC	1 cut(s)	1845
BstX2I	RGATCY	4 cut(s)	296, 575, 1544, 2250
BstYI	RGATCY	4 cut(s)	296, 575, 1544, 2250
BstZ17I	GTATAC	1 cut(s)	856
Bsu36I	CCTNAGG	1 cut(s)	2021
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	8, 924, 1087, 1118, 1342
BtgI	CCRYGG	2 cut(s)	462, 1776
BtsCI	GGATG	9 cut(s)	69, 75, 812, 995, 1735, 1900, 1974, 2032, 2217
BtsIMutI	CAGTG	7 cut(s)	563, 1380, 1719, 1788, 1948, 2206, 2335
Cac8I	GCNNGC	6 cut(s)	42, 926, 1033, 1147, 1171, 1258
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	792
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	4 cut(s)	466, 1086, 1340, 1972
CseI	GACGC	1 cut(s)	1731
CsiI	ACCWGGT	2 cut(s)	233, 1327
Csp6I	GTAC	9 cut(s)	127, 953, 1039, 1241, 1385, 1400, 1762, 1842, 2083
CviQI	GTAC	9 cut(s)	127, 953, 1039, 1241, 1385, 1400, 1762, 1842, 2083
DdeI	CTNAG	6 cut(s)	177, 1007, 1374, 1653, 1722, 2021
DrdI	GACNNNNNNGTC	1 cut(s)	2269
DseDI	GACNNNNNNGTC	1 cut(s)	2269
Eam1104I	CTCTTC	3 cut(s)	116, 2181, 2303
EarI	CTCTTC	3 cut(s)	116, 2181, 2303
Eco130I	CCWWGG	3 cut(s)	462, 1776, 2330
Eco147I	AGGCCT	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	1438, 1673
Eco47I	GGWCC	2 cut(s)	466, 1972
Eco57I	CTGAAG	1 cut(s)	1305
Eco81I	CCTNAGG	1 cut(s)	2021
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	1340
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	233, 274, 1327
EcoT14I	CCWWGG	3 cut(s)	462, 1776, 2330
EcoT22I	ATGCAT	2 cut(s)	672, 1262
ErhI	CCWWGG	3 cut(s)	462, 1776, 2330
Esp3I	CGTCTC	1 cut(s)	711
FalI	AAGNNNNNCTT	1 cut(s)	2314
FaqI	GGGAC	2 cut(s)	40, 452
FauNDI	CATATG	2 cut(s)	724, 932
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	7 cut(s)	447, 450, 759, 1254, 1611, 1614, 1869
FokI	GGATG	9 cut(s)	56, 62, 799, 1002, 1742, 1907, 1981, 2039, 2224
Fsp4HI	GCNGC	7 cut(s)	447, 450, 759, 1254, 1611, 1614, 1869
FspBI	CTAG	1 cut(s)	1056
GluI	GCNGC	7 cut(s)	447, 450, 759, 1254, 1611, 1614, 1869
GsuI	CTGGAG	2 cut(s)	1233, 1842
HaeIII	GGCC	5 cut(s)	8, 924, 1087, 1118, 1342
HapII	CCGG	4 cut(s)	106, 770, 1215, 1975
HgaI	GACGC	1 cut(s)	1731
HincII	GTYRAC	1 cut(s)	1801
HindII	GTYRAC	1 cut(s)	1801
HindIII	AAGCTT	1 cut(s)	1287
HinfI	GANTC	8 cut(s)	171, 409, 661, 780, 871, 1218, 2176, 2326
HpaII	CCGG	4 cut(s)	106, 770, 1215, 1975
HphI	GGTGA	3 cut(s)	1146, 2149, 2195
Hpy166II	GTNNAC	6 cut(s)	271, 360, 856, 1013, 1801, 2110
Hpy188I	TCNGA	9 cut(s)	50, 186, 408, 802, 1165, 1285, 1375, 2156, 2255
Hpy188III	TCNNGA	8 cut(s)	79, 143, 413, 793, 1215, 1452, 1859, 1975
Hpy8I	GTNNAC	6 cut(s)	271, 360, 856, 1013, 1801, 2110
HpyAV	CCTTC	8 cut(s)	73, 413, 826, 1129, 1353, 1462, 1503, 1594
HpyCH4III	ACNGT	6 cut(s)	268, 1384, 1792, 1837, 2034, 2120
HpyCH4IV	ACGT	2 cut(s)	749, 1199
HpyF10VI	GCNNNNNNNGC	8 cut(s)	458, 527, 947, 968, 1234, 1253, 1619, 1628
HpyF3I	CTNAG	6 cut(s)	177, 1007, 1374, 1653, 1722, 2021
HpySE526I	ACGT	2 cut(s)	749, 1199
Kpn2I	TCCGGA	2 cut(s)	1214, 1974
KpnI	GGTACC	1 cut(s)	1765
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	733, 1252, 1580
Lsp1109I	GCAGC	7 cut(s)	433, 461, 745, 1265, 1622, 1625, 1855
LweI	GCATC	4 cut(s)	821, 1156, 1269, 1345
MabI	ACCWGGT	2 cut(s)	233, 1327
MaeI	CTAG	1 cut(s)	1056
MaeII	ACGT	2 cut(s)	749, 1199
MaeIII	GTNAC	6 cut(s)	172, 688, 901, 1195, 1323, 1656
MboII	GAAGA	7 cut(s)	58, 103, 529, 1477, 1845, 2198, 2320
MflI	RGATCY	4 cut(s)	296, 575, 1544, 2250
MhlI	GDGCHC	2 cut(s)	1071, 1382
MluCI	AATT	8 cut(s)	138, 163, 316, 1047, 1137, 1509, 1878, 2071
MlyI	GAGTC	4 cut(s)	180, 403, 1227, 2170
MmeI	TCCRAC	3 cut(s)	45, 757, 1046
Mph1103I	ATGCAT	2 cut(s)	672, 1262
MroI	TCCGGA	2 cut(s)	1214, 1974
MroXI	GAANNNNTTC	1 cut(s)	2165
MseI	TTAA	9 cut(s)	420, 597, 654, 1107, 1334, 1436, 1500, 1709, 1953
MslI	CAYNNNNRTG	2 cut(s)	1109, 1724
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	4 cut(s)	106, 770, 1215, 1975
MspR9I	CCNGG	3 cut(s)	235, 276, 1329
MvaI	CCWGG	3 cut(s)	235, 276, 1329
MvnI	CGCG	1 cut(s)	1742
MwoI	GCNNNNNNNGC	8 cut(s)	458, 527, 947, 968, 1234, 1253, 1619, 1628
NcoI	CCATGG	2 cut(s)	462, 1776
NdeI	CATATG	2 cut(s)	724, 932
NmuCI	GTSAC	3 cut(s)	172, 901, 1656
NsiI	ATGCAT	2 cut(s)	672, 1262
NspI	RCATGY	5 cut(s)	44, 674, 842, 1149, 1260
OliI	CACNNNNGTG	1 cut(s)	1724
PaeI	GCATGC	3 cut(s)	44, 1149, 1260
PagI	TCATGA	1 cut(s)	792
PceI	AGGCCT	1 cut(s)	8
PciI	ACATGT	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	2165
PfeI	GAWTC	4 cut(s)	661, 780, 871, 2326
PflMI	CCANNNNNTGG	1 cut(s)	2212
PkrI	GCNGC	7 cut(s)	448, 451, 760, 1255, 1612, 1615, 1870
PleI	GAGTC	4 cut(s)	179, 403, 1226, 2170
PpsI	GAGTC	4 cut(s)	179, 403, 1226, 2170
PscI	ACATGT	1 cut(s)	838
PshBI	ATTAAT	2 cut(s)	1107, 1953
Psp1406I	AACGTT	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	233, 274, 1327
PspGI	CCWGG	3 cut(s)	233, 274, 1327
PspPI	GGNCC	4 cut(s)	466, 1086, 1340, 1972
PstI	CTGCAG	2 cut(s)	295, 451
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	4 cut(s)	296, 575, 1544, 2250
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	9 cut(s)	128, 954, 1040, 1242, 1386, 1401, 1763, 1843, 2084
RsaNI	GTAC	9 cut(s)	127, 953, 1039, 1241, 1385, 1400, 1762, 1842, 2083
RseI	CAYNNNNRTG	2 cut(s)	1109, 1724
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	9 cut(s)	420, 597, 654, 1107, 1334, 1436, 1500, 1709, 1953
SatI	GCNGC	7 cut(s)	447, 450, 759, 1254, 1611, 1614, 1869
Sau96I	GGNCC	4 cut(s)	466, 1086, 1340, 1972
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	4 cut(s)	180, 403, 1227, 2170
ScrFI	CCNGG	3 cut(s)	235, 276, 1329
SduI	GDGCHC	2 cut(s)	1071, 1382
SexAI	ACCWGGT	2 cut(s)	233, 1327
SfaNI	GCATC	4 cut(s)	821, 1156, 1269, 1345
SfcI	CTRYAG	2 cut(s)	291, 447
SinI	GGWCC	2 cut(s)	466, 1972
SmiMI	CAYNNNNRTG	2 cut(s)	1109, 1724
SmlI	CTYRAG	2 cut(s)	34, 1450
SmoI	CTYRAG	2 cut(s)	34, 1450
SphI	GCATGC	3 cut(s)	44, 1149, 1260
Sse9I	AATT	8 cut(s)	138, 163, 316, 1047, 1137, 1509, 1878, 2071
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	2237
SspI	AATATT	1 cut(s)	2165
SspMI	CTAG	1 cut(s)	1056
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	233, 274, 1327
StyI	CCWWGG	3 cut(s)	462, 1776, 2330
TaaI	ACNGT	6 cut(s)	268, 1384, 1792, 1837, 2034, 2120
TaiI	ACGT	2 cut(s)	752, 1202
TaqI	TCGA	2 cut(s)	101, 229
TasI	AATT	8 cut(s)	138, 163, 316, 1047, 1137, 1509, 1878, 2071
TatI	WGTACW	3 cut(s)	952, 1038, 2082
TfiI	GAWTC	4 cut(s)	661, 780, 871, 2326
Tru1I	TTAA	9 cut(s)	420, 597, 654, 1107, 1334, 1436, 1500, 1709, 1953
Tru9I	TTAA	9 cut(s)	420, 597, 654, 1107, 1334, 1436, 1500, 1709, 1953
TscAI	CASTG	6 cut(s)	570, 1387, 1726, 1795, 1948, 2213
TseFI	GTSAC	3 cut(s)	172, 901, 1656
TseI	GCWGC	7 cut(s)	446, 449, 758, 1253, 1610, 1613, 1868
Tsp45I	GTSAC	3 cut(s)	172, 901, 1656
TspDTI	ATGAA	4 cut(s)	58, 525, 1410, 1586
TspRI	CASTG	6 cut(s)	570, 1387, 1726, 1795, 1948, 2213
Van91I	CCANNNNNTGG	1 cut(s)	2212
VpaK11BI	GGWCC	2 cut(s)	466, 1972
VspI	ATTAAT	2 cut(s)	1107, 1953
XapI	RAATTY	3 cut(s)	316, 1878, 2071
XceI	RCATGY	5 cut(s)	44, 674, 842, 1149, 1260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	987
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	2165
XspI	CTAG	1 cut(s)	1056
ZrmI	AGTACT	1 cut(s)	954
Zsp2I	ATGCAT	2 cut(s)	672, 1262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.