Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0021139

Physical Location & Seq

Genomic Coordinates Reverse (-)

23322542 .. 23323038

Gene Structure 497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1269700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCTTAATGCATTATGTATGCCTTACAACATCTGGCCTATTCCTTTCTTTGAGACAGGTAAGAATCTATAGGGAGAAGGCAGTTCACATATATGCAATGAAGAAGCTTAAGAAATCAGAGATGCTTCGGAGAGGTCAAGTGGAACATGTGAAAGCTAAGAGGAATCTACTTGATCAAGTTGACAATAATTGTATCGACAAGCTCTATTGTTTGTTCCAAGATGAAGAGTACTTGTATCTAATTACGAAATATCTTCCTGGTGGGGATATGATGACTTTAGTGATGCGCAATGATACATTGACAGAAGATGAAGCTAGATTTTATATTGGGGAAACCATCCTAGCTATTGAGTCCATTCATAAACATAATTATATACATAGGTACATTGATGTTAGTTTGATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

137

Amino Acids

16.13

Weight (kDa)

8.39

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 128	3.7e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	27 - 130	1.6e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021139)

Species	Orthologous Gene IDs
malus_domestica	MD15G1269700.v1.1 MD16G1194900.v1.1
pyrus_communis	pycom14g05980 pycom17g09670
rosa_multiflora	Rmu_co8294415.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AfaI	GTAC	2 cut(s)	233, 386
AflII	CTTAAG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	5 cut(s)	109, 158, 205, 317, 347
AluI	AGCT	5 cut(s)	109, 158, 205, 317, 347
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	3, 37
AspLEI	GCGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	318, 344
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	114, 276
Bse3DI	GCAATG	2 cut(s)	105, 298
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	339
BseMI	GCAATG	2 cut(s)	105, 298
BshFI	GGCC	2 cut(s)	5, 39
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	5, 39
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	5, 39
BspTI	CTTAAG	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	105, 298
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	5, 39
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	232, 385
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	7 cut(s)	5, 39, 109, 158, 205, 317, 347
CviKI_1	RGCY	7 cut(s)	5, 39, 109, 158, 205, 317, 347
CviQI	GTAC	2 cut(s)	232, 385
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	1 cut(s)	152
FatI	CATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	175
FokI	GGATG	1 cut(s)	326
FspBI	CTAG	2 cut(s)	318, 344
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	5, 39
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	66, 166, 353
Hpy166II	GTNNAC	2 cut(s)	88, 184
Hpy188I	TCNGA	3 cut(s)	121, 132, 410
Hpy8I	GTNNAC	2 cut(s)	88, 184
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	13, 98
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	21, 44, 246, 273
LweI	GCATC	2 cut(s)	114, 276
MaeI	CTAG	2 cut(s)	318, 344
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	115, 239, 248, 320
MluCI	AATT	3 cut(s)	190, 243, 370
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	2 cut(s)	128, 156
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	2 cut(s)	8, 111
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	152
NsbI	TGCGCA	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	152
PciI	ACATGT	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	66, 166
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PscI	ACATGT	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	233, 386
RsaNI	GTAC	2 cut(s)	232, 385
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	8, 111
Sau3AI	GATC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	8 cut(s)	63, 111, 139, 160, 207, 319, 349, 386
SfaNI	GCATC	2 cut(s)	114, 276
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	190, 243, 370
SspMI	CTAG	2 cut(s)	318, 344
StyD4I	CCNGG	1 cut(s)	259
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	190, 243, 370
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	66, 166
Tru1I	TTAA	2 cut(s)	8, 111
Tru9I	TTAA	2 cut(s)	8, 111
TspDTI	ATGAA	4 cut(s)	116, 240, 327, 350
Vha464I	CTTAAG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	2 cut(s)	318, 344
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.