Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0021139

Physical Location & Seq

Genomic Coordinates Reverse (-)

17343550 .. 17344038

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1194900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCATTACGTATGCCTTACAACATTTGACCTATTCCTTTCTCTGAGACAGGTTAAAGTCTATATGGAGAAGGCAACTAGTCACGTATATGCAATGAAGAAGCTTAAGAAATCAGAGATGTTTCGGAGAGCCCAAGTGGAACATGTGAAAGCTGAGAGGAATCTACTTGTTGAGGATGAAGAGTACTTGTATCTAATTACGGAATATCTTCCTGGTGGGGATATGATGACTTTATTGATGCACAAGGATACATTGACAGAAGATGAAGCTAGATTTTATATTGGGGAAACCGTCCTAGCTATTGAGTCCGTTCATAAATATAATTACATCCATAGGTACAATGATGTTAGTTTGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

121

Amino Acids

14.32

Weight (kDa)

6.05

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 112	1.6e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0021139)

Species	Orthologous Gene IDs
malus_domestica	MD15G1269700.v1.1 MD16G1194900.v1.1
pyrus_communis	pycom14g05980 pycom17g09670
rosa_multiflora	Rmu_co8294415.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	185, 338
AflII	CTTAAG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	142
AhlI	ACTAGT	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	103, 152, 269, 299
AluI	AGCT	4 cut(s)	103, 152, 269, 299
Alw26I	GTCTC	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	40
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	3 cut(s)	78, 270, 296
BfrI	CTTAAG	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	228
BsaAI	YACGTR	2 cut(s)	10, 85
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	181, 327
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	35, 144
BsmAI	GTCTC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	36, 145
BspTI	CTTAAG	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	104
BstBAI	YACGTR	2 cut(s)	10, 85
BstDEI	CTNAG	2 cut(s)	44, 153
BstF5I	GGATG	2 cut(s)	181, 327
BstMAI	GTCTC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	211
BstSNI	TACGTA	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	181, 327
Csp6I	GTAC	2 cut(s)	184, 337
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	5 cut(s)	103, 131, 152, 269, 299
CviKI_1	RGCY	5 cut(s)	103, 131, 152, 269, 299
CviQI	GTAC	2 cut(s)	184, 337
DdeI	CTNAG	2 cut(s)	44, 153
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco105I	TACGTA	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	1 cut(s)	146
FatI	CATG	1 cut(s)	142
FokI	GGATG	2 cut(s)	188, 314
FriOI	GRGCYC	1 cut(s)	133
FspBI	CTAG	3 cut(s)	78, 270, 296
Hin1II	CATG	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	160, 305
Hpy188I	TCNGA	3 cut(s)	45, 115, 126
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	9, 84
HpyCH4V	TGCA	3 cut(s)	4, 92, 241
HpyF3I	CTNAG	2 cut(s)	44, 153
HpySE526I	ACGT	2 cut(s)	9, 84
Hsp92II	CATG	1 cut(s)	146
LpnPI	CCDG	3 cut(s)	35, 198, 225
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	3 cut(s)	78, 270, 296
MaeII	ACGT	2 cut(s)	9, 84
MaeIII	GTNAC	1 cut(s)	80
MboII	GAAGA	4 cut(s)	109, 191, 200, 272
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	2 cut(s)	195, 322
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	150, 166
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	2 cut(s)	54, 105
MslI	CAYNNNNRTG	1 cut(s)	87
MspCI	CTTAAG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	146
PciI	ACATGT	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	2 cut(s)	10, 85
PscI	ACATGT	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	185, 338
RsaNI	GTAC	2 cut(s)	184, 337
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	54, 105
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	9 cut(s)	12, 33, 54, 87, 105, 154, 271, 301, 338
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SnaBI	TACGTA	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	2 cut(s)	195, 322
SspMI	CTAG	3 cut(s)	78, 270, 296
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	12, 87
TasI	AATT	2 cut(s)	195, 322
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	54, 105
Tru9I	TTAA	2 cut(s)	54, 105
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	110, 192, 279, 302
TspGWI	ACGGA	2 cut(s)	215, 298
Vha464I	CTTAAG	1 cut(s)	104
XceI	RCATGY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	3 cut(s)	78, 270, 296
ZrmI	AGTACT	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.