Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0022337

Physical Location & Seq

Genomic Coordinates Forward (+)

43374828 .. 43376773

Gene Structure 1946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1360000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCATCATACTAATGCGGATGGTAGTAACCATTATGATTTTGAGGAAAAGATAAACTTTGCTGTTTTCCCATCACTACAAGGAGGGCCACACAACAACCATATTGCTGCCCTTGCCATAGCCTTAAAACAAGTAGCTACTCCAGAATATAAAGCATACATGCAACAGGTGAAGAAGAATGCACAGGCCTTAGCTAATGCCTTGTTAAGAAGAAAATGCAGATTGGTAACTGGGGGCACGGACAATCACTTGTTGCTTTGGGATTTGACCGCTGTTGGTTTAACAGGGAAGAATTATGAAAAGGTTTGTGAGATGTGCCACATTACTCTCAATAAAACTGCTATATTTGGTGATAATGGTGCTTTTTCTCCCGGGGGAGTGAGAATCGGTACTCCTGCTATGACTACCAGAGGTTGTGTGGAATCCGATTTCGAAACGATCGCAGATTTTCTTCTGAGGGCTGCCCAGATCACTGTTTGTATACAGAGGGAATATGGAAAATTCCAGAAAGATTTTATCAAAGGTCTCCACAACAACAAAGATATTGTCGAGCTCAGAAATCGGGTCGAAACATTTGCATCCCAGTTTGAAATGCCAGGATATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006730 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046500 GO:0046686 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051052 GO:0051171 GO:0051186 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072505 GO:0080090 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

203

Amino Acids

22.49

Weight (kDa)

7.69

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	7 - 150	3.3e-53	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022337)

Species	Orthologous Gene IDs
malus_domestica	MD08G1173500.v1.1 MD15G1360000.v1.1
pyrus_communis	pycom04g12090
rosa_samantha	Rh7DG474800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	2 cut(s)	17, 270
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	3 cut(s)	137, 194, 553
AluI	AGCT	3 cut(s)	137, 194, 553
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	86, 186
ApeKI	GCWGC	2 cut(s)	107, 461
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	372, 373
AsuHPI	GGTGA	2 cut(s)	181, 362
AsuII	TTCGAA	1 cut(s)	432
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	94, 448
BccI	CCATC	2 cut(s)	14, 79
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	2 cut(s)	372, 373
BcoDI	GTCTC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	108, 462
BlsI	GCNGC	2 cut(s)	109, 463
Bme1390I	CCNGG	3 cut(s)	372, 373, 597
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	3 cut(s)	372, 373, 597
BmrI	ACTGGG	2 cut(s)	240, 577
BmsI	GCATC	2 cut(s)	13, 587
BmuI	ACTGGG	2 cut(s)	240, 577
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	372, 373
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	371, 372
Bse1I	ACTGG	2 cut(s)	235, 583
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	371, 372
BseGI	GGATG	2 cut(s)	25, 578
BseMII	CTCAG	2 cut(s)	446, 568
BseNI	ACTGG	2 cut(s)	235, 583
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	94, 448
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	2 cut(s)	88, 188
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	88, 188
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	239, 555
Bsp143I	GATC	2 cut(s)	438, 468
BspACI	CCGC	2 cut(s)	17, 270
BspANI	GGCC	2 cut(s)	88, 188
BspCNI	CTCAG	2 cut(s)	447, 567
BspT104I	TTCGAA	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	235, 583
BssECI	CCNNGG	2 cut(s)	371, 372
BssMI	GATC	2 cut(s)	438, 468
BssNAI	GTATAC	1 cut(s)	482
Bst1107I	GTATAC	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	475
BstBI	TTCGAA	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	190, 455, 554
BstF5I	GGATG	2 cut(s)	25, 578
BstKTI	GATC	2 cut(s)	441, 471
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	438, 468
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	370, 371, 595
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	94, 448
BstZ17I	GTATAC	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	88, 188
BtsCI	GGATG	2 cut(s)	25, 578
BtsIMutI	CAGTG	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	86
Cfr9I	CCCGGG	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	7 cut(s)	88, 122, 137, 188, 194, 461, 553
CviKI_1	RGCY	7 cut(s)	88, 122, 137, 188, 194, 461, 553
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	3 cut(s)	190, 455, 554
DpnI	GATC	2 cut(s)	440, 470
DpnII	GATC	2 cut(s)	438, 468
Ecl136II	GAGCTC	1 cut(s)	553
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	553
Eco88I	CYCGRG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	555
FaeI	CATG	1 cut(s)	163
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	108, 462
FokI	GGATG	2 cut(s)	32, 565
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	108, 462
GluI	GCNGC	2 cut(s)	108, 462
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	88, 188
HapII	CCGG	1 cut(s)	372
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	2 cut(s)	384, 422
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	2 cut(s)	181, 362
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	3 cut(s)	427, 456, 557
Hpy188III	TCNNGA	2 cut(s)	143, 505
Hpy8I	GTNNAC	1 cut(s)	482
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	5 cut(s)	4, 163, 182, 219, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	190, 455, 554
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	438, 468
Lsp1109I	GCAGC	2 cut(s)	94, 448
LweI	GCATC	2 cut(s)	13, 587
MaeIII	GTNAC	2 cut(s)	26, 226
MalI	GATC	2 cut(s)	440, 470
MboI	GATC	2 cut(s)	438, 468
MboII	GAAGA	5 cut(s)	184, 187, 222, 301, 443
MhlI	GDGCHC	2 cut(s)	239, 555
MluCI	AATT	2 cut(s)	292, 500
MnlI	CCTC	5 cut(s)	37, 77, 404, 450, 480
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	125, 206, 281
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	3 cut(s)	372, 373, 597
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	372, 373
NdeII	GATC	2 cut(s)	438, 468
NlaIII	CATG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	384, 422
PkrI	GCNGC	2 cut(s)	109, 463
Ple19I	CGATCG	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	86
PvuI	CGATCG	1 cut(s)	441
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	125, 206, 281
SatI	GCNGC	2 cut(s)	108, 462
Sau3AI	GATC	2 cut(s)	438, 468
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	372, 373, 597
SduI	GDGCHC	2 cut(s)	239, 555
SetI	ASST	7 cut(s)	139, 171, 196, 306, 415, 526, 555
SfaNI	GCATC	2 cut(s)	13, 587
SfuI	TTCGAA	1 cut(s)	432
SmaI	CCCGGG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	292, 500
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	2 cut(s)	17, 270
SstI	GAGCTC	1 cut(s)	555
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	370, 371, 595
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	3 cut(s)	432, 549, 567
TasI	AATT	2 cut(s)	292, 500
TfiI	GAWTC	2 cut(s)	384, 422
Tru1I	TTAA	3 cut(s)	125, 206, 281
Tru9I	TTAA	3 cut(s)	125, 206, 281
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	107, 461
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	254
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmaI	CCCGGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	481
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.