Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0022337

Physical Location & Seq

Genomic Coordinates Reverse (-)

67879367 .. 67882645

Gene Structure 3279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG474800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTGTGACATGGCTCATATCAGCGGCCTTATAGCAGCCAAGGAGTGTGCGAGTCCTTTTGATTATTGTGATATTGTTACGTCAACAACACACAAAAGCCTCCGGGGTCCTAGGGGAGGTATTATATTTTACCGGAAAGGTCCAAAAAGAAGGAAGCAAGGCATGCATCAATCAAATGGGGATGGAAATAACCTGTATGATTTTGAAGAAAAGATAAATTTCGCTGTTTTCCCATCGCTACAGGGTGGTCCTCACAACAACCATATTGCTGCTCTTGCCATAGCCTTAAAACAAGTGGCTACTCCAGAATATAAAGACTACATGAACCAGGTCAAGAAAAATGCACAGTCCTTGGCAAATGCTTTGTTAAGAAGAAAATGCAGATTGGTTACTGGGGGTACCGATAATCACTTGTTGCTTTGGGATCTTACAGCTCTTGGTATAACAGGGAAGAACTACGAAAAAGTTTGCGAGATCTGCCATATTACTCTCAATAAAAGTGCCATATTTGGTGATAACGGAGCCTTTTCTCCTGGGGGAGTTAGAATTGGTACCCCTGCTATGACTTCACGAGGTTGTGTTGAGTCTGATTTCGAGACAATTGCCGACTTTCTTATTAGGGCTGCCCAGATTACTGTTGCTGTTCAGAGAGAACATGGAAAATATCAGAAAGAATTTCTCAAAGGTCTCCAGAACAATAAAGATATTGTTGAACTTCGAAATCGTGTTGAAACATTTGCTTCCCAATTTGAAATGCCAGGATATGATACTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006730 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046500 GO:0046686 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051052 GO:0051171 GO:0051186 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072505 GO:0080090 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

258

Amino Acids

28.58

Weight (kDa)

8.85

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	1 - 204	2.8e-78	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022337)

Species	Orthologous Gene IDs
malus_domestica	MD08G1173500.v1.1 MD15G1360000.v1.1
pyrus_communis	pycom04g12090
rosa_samantha	Rh7DG474800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	398, 551
AccB1I	GGYRCC	2 cut(s)	398, 551
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	217, 674
AfaI	GTAC	2 cut(s)	400, 553
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	206, 713, 731, 752
AjnI	CCWGG	3 cut(s)	327, 532, 757
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
Alw26I	GTCTC	2 cut(s)	590, 692
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	35, 269, 623
ApoI	RAATTY	2 cut(s)	217, 674
Asp718I	GGTACC	2 cut(s)	398, 551
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	107, 140, 248
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	718
AvaII	GGWCC	3 cut(s)	107, 140, 248
AvrII	CCTAGG	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	398, 551
BauI	CACGAG	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	47, 256, 610
BccI	CCATC	2 cut(s)	176, 241
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	3 cut(s)	329, 534, 759
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	590, 692
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	474
BisI	GCNGC	4 cut(s)	25, 36, 270, 624
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	4 cut(s)	26, 37, 271, 625
Bme1390I	CCNGG	4 cut(s)	104, 329, 534, 759
Bme18I	GGWCC	3 cut(s)	107, 140, 248
BmgT120I	GGNCC	3 cut(s)	107, 140, 248
BmiI	GGNNCC	4 cut(s)	108, 400, 523, 553
BmrFI	CCNGG	4 cut(s)	104, 329, 534, 759
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	288, 674
Bpu14I	TTCGAA	1 cut(s)	718
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	5 cut(s)	39, 103, 110, 351, 533
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	3 cut(s)	329, 534, 759
BseDI	CCNNGG	5 cut(s)	39, 103, 110, 351, 533
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	47, 256, 610
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	2 cut(s)	398, 551
BsiSI	CCGG	2 cut(s)	103, 133
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	590, 692
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	692
Bsp119I	TTCGAA	1 cut(s)	718
Bsp143I	GATC	2 cut(s)	424, 474
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	108, 400, 523, 553
BspPI	GGATC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	718
BspT107I	GGYRCC	2 cut(s)	398, 551
BspTNI	GGTCTC	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	5 cut(s)	39, 103, 110, 351, 533
BssMI	GATC	2 cut(s)	424, 474
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	3 cut(s)	39, 110, 351
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	3 cut(s)	329, 534, 759
Bst4CI	ACNGT	2 cut(s)	348, 637
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	427, 477
BstMAI	GTCTC	2 cut(s)	590, 692
BstMBI	GATC	2 cut(s)	424, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 275, 477
BstNI	CCWGG	3 cut(s)	329, 534, 759
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	4 cut(s)	102, 327, 532, 757
BstSFI	CTRYAG	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	47, 256, 610
BstX2I	RGATCY	2 cut(s)	424, 474
BstYI	RGATCY	2 cut(s)	424, 474
BsuRI	GGCC	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	107, 140, 248
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	399, 552
CviAII	CATG	4 cut(s)	10, 163, 322, 656
CviJI	RGCY	9 cut(s)	14, 27, 38, 99, 284, 299, 434, 524, 623
CviKI_1	RGCY	9 cut(s)	14, 27, 38, 99, 284, 299, 434, 524, 623
CviQI	GTAC	2 cut(s)	399, 552
DpnI	GATC	2 cut(s)	426, 476
DpnII	GATC	2 cut(s)	424, 474
Eco130I	CCWWGG	3 cut(s)	39, 110, 351
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	3 cut(s)	107, 140, 248
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	327, 532, 757
EcoT14I	CCWWGG	3 cut(s)	39, 110, 351
EcoT22I	ATGCAT	1 cut(s)	168
ErhI	CCWWGG	3 cut(s)	39, 110, 351
FaeI	CATG	4 cut(s)	13, 166, 325, 659
FatI	CATG	4 cut(s)	9, 162, 321, 655
Fnu4HI	GCNGC	4 cut(s)	25, 36, 270, 624
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	25, 36, 270, 624
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	4 cut(s)	25, 36, 270, 624
GsuI	CTGGAG	2 cut(s)	288, 674
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	2 cut(s)	103, 133
Hin1II	CATG	4 cut(s)	13, 166, 325, 659
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	52, 584
HpaII	CCGG	2 cut(s)	103, 133
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	3 cut(s)	589, 648, 669
Hpy188III	TCNNGA	5 cut(s)	305, 334, 570, 595, 691
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	348, 637
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	166, 344, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 275, 477
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	13, 166, 325, 659
KpnI	GGTACC	2 cut(s)	402, 555
Kzo9I	GATC	2 cut(s)	424, 474
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	3 cut(s)	47, 256, 610
LweI	GCATC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	5, 76, 388
MalI	GATC	2 cut(s)	426, 476
MboI	GATC	2 cut(s)	424, 474
MboII	GAAGA	3 cut(s)	218, 384, 463
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	2 cut(s)	424, 474
MluCI	AATT	5 cut(s)	217, 546, 600, 674, 746
MlyI	GAGTC	2 cut(s)	61, 593
MnlI	CCTC	4 cut(s)	110, 110, 261, 566
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	2 cut(s)	287, 368
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	103, 133
MspR9I	CCNGG	4 cut(s)	104, 329, 534, 759
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	3 cut(s)	329, 534, 759
MwoI	GCNNNNNNNGC	3 cut(s)	163, 275, 477
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	424, 474
NlaIII	CATG	4 cut(s)	13, 166, 325, 659
NlaIV	GGNNCC	4 cut(s)	108, 400, 523, 553
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	718
PaeI	GCATGC	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	26, 37, 271, 625
PleI	GAGTC	2 cut(s)	60, 592
PpsI	GAGTC	2 cut(s)	60, 592
PpuMI	RGGWCCY	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	327, 532, 757
PspGI	CCWGG	3 cut(s)	327, 532, 757
PspN4I	GGNNCC	4 cut(s)	108, 400, 523, 553
PspPI	GGNCC	3 cut(s)	107, 140, 248
PspPPI	RGGWCCY	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	424, 474
RsaI	GTAC	2 cut(s)	400, 553
RsaNI	GTAC	2 cut(s)	399, 552
SaqAI	TTAA	2 cut(s)	287, 368
SatI	GCNGC	4 cut(s)	25, 36, 270, 624
Sau3AI	GATC	2 cut(s)	424, 474
Sau96I	GGNCC	3 cut(s)	107, 140, 248
SchI	GAGTC	2 cut(s)	61, 593
ScrFI	CCNGG	4 cut(s)	104, 329, 534, 759
SetI	ASST	8 cut(s)	83, 121, 142, 195, 333, 436, 577, 688
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	718
SinI	GGWCC	3 cut(s)	107, 140, 248
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	5 cut(s)	217, 546, 600, 674, 746
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	4 cut(s)	102, 327, 532, 757
StyI	CCWWGG	3 cut(s)	39, 110, 351
TaaI	ACNGT	2 cut(s)	348, 637
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	594, 718
TasI	AATT	5 cut(s)	217, 546, 600, 674, 746
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	287, 368
Tru9I	TTAA	2 cut(s)	287, 368
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	35, 269, 623
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	534
VpaK11BI	GGWCC	3 cut(s)	107, 140, 248
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	2 cut(s)	217, 674
XceI	RCATGY	1 cut(s)	166
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.