Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0022337

Physical Location & Seq

Genomic Coordinates Forward (+)

15029189 .. 15032021

Gene Structure 2833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTGACATGGCTCATATTAGCGGTCTTGTGGCAGCCAAGGAATGTGCAAGCCCGTTTGATTATTGTGATATTGTTACGTCAACAACGCACAAAAGTCTCCGGGGACCTAGAGGAGGTATTATTTTTTACAGAAAAGGCACAAAATTAAGGAAGCAAGGTGTACCTCATACTGATGAGGGTAGTAACAATTATGATTTTGAGGAAAAGATAAACTTCGCCGTTTTCCCCTCCCTACAAGGAGGTCCTCACAACAATTATATTGCTGCTCTTGCCATTGCCTTAAAACAAGTAGCTACTCCAGAGTATAAAGCATACATGACCCAGGTGAAGAGAAATGCACAGGCCTTGGCTAATGCTTTGTTAAGAAGAAAATGCAGATTGGTGACTGGGGGTACCGATAATCACTTGCTGCTTTGGGATTTGACTGGTCTTGGTATAACAGGTAAGAACTTTGAAAAGGTCTGCGAGTTGGCCGACATCACTCTCAATAAAACTGCGATATTTGGTGATAATGGTGCTCTTTCTCTTCGGGGAGTGAGAATTGGTACTCCTGCTATGACGACTAGAGGTTGTGTGGAGGCCGATTTTGAGACAATTGCAGACTTTCTTCTAAGGGCTGCTCAGATCACTGCTTCTGTTCAGAGGGAACAAGGAAAATTTCAGAAAGATTTTATGCAAGGTCTCCAGAACAACAAAGATATTGTTGAGCTCAGAAATCGGGTTGAAAAATTTGCGTACCAGTTTGAAATGCCAGGATATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006730 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046500 GO:0046686 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051052 GO:0051171 GO:0051186 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0072505 GO:0080090 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

256

Amino Acids

28.26

Weight (kDa)

8.83

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	1 - 203	6.6e-77	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022337)

Species	Orthologous Gene IDs
malus_domestica	MD08G1173500.v1.1 MD15G1360000.v1.1
pyrus_communis	pycom04g12090
rosa_samantha	Rh7DG474800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	659, 731
AfaI	GTAC	4 cut(s)	165, 397, 550, 740
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	458, 728, 749
AjnI	CCWGG	2 cut(s)	324, 754
AluBI	AGCT	2 cut(s)	296, 712
AluI	AGCT	2 cut(s)	296, 712
Alw21I	GWGCWC	2 cut(s)	523, 714
Alw26I	GTCTC	3 cut(s)	104, 587, 689
AoxI	GGCC	3 cut(s)	345, 474, 582
ApeKI	GCWGC	4 cut(s)	35, 266, 412, 620
ApoI	RAATTY	2 cut(s)	659, 731
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	107, 245
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	340, 397, 521
AvaII	GGWCC	2 cut(s)	107, 245
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	523, 714
BbvI	GCAGC	4 cut(s)	47, 253, 399, 607
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	326, 756
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	104, 587, 689
BfaI	CTAG	2 cut(s)	111, 567
BisI	GCNGC	4 cut(s)	36, 267, 413, 621
BlsI	GCNGC	4 cut(s)	37, 268, 414, 622
Bme1390I	CCNGG	3 cut(s)	104, 326, 756
Bme18I	GGWCC	2 cut(s)	107, 245
BmgT120I	GGNCC	2 cut(s)	107, 245
BmiI	GGNNCC	2 cut(s)	108, 397
BmrFI	CCNGG	3 cut(s)	104, 326, 756
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpmI	CTGGAG	2 cut(s)	285, 671
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	4 cut(s)	39, 103, 324, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	3 cut(s)	394, 433, 742
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	326, 756
BseDI	CCNNGG	4 cut(s)	39, 103, 324, 348
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	638, 727
BseNI	ACTGG	3 cut(s)	394, 433, 742
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	47, 253, 399, 607
BshFI	GGCC	3 cut(s)	347, 476, 584
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	523, 714
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	3 cut(s)	104, 587, 689
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	347, 476, 584
Bso31I	GGTCTC	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	523, 714
Bsp143I	GATC	1 cut(s)	627
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	3 cut(s)	347, 476, 584
BspCNI	CTCAG	2 cut(s)	637, 726
BspLI	GGNNCC	2 cut(s)	108, 397
BspT107I	GGYRCC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	394, 433, 742
BssECI	CCNNGG	4 cut(s)	39, 103, 324, 348
BssMI	GATC	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	39, 348
Bst2UI	CCWGG	2 cut(s)	326, 756
Bst6I	CTCTTC	2 cut(s)	326, 534
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	614, 624, 713
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	630
BstMAI	GTCTC	3 cut(s)	104, 587, 689
BstMBI	GATC	1 cut(s)	627
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	326, 756
BstSCI	CCNGG	3 cut(s)	102, 324, 754
BstV1I	GCAGC	4 cut(s)	47, 253, 399, 607
BsuRI	GGCC	3 cut(s)	347, 476, 584
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	107, 245
Csp6I	GTAC	4 cut(s)	164, 396, 549, 739
CviAII	CATG	2 cut(s)	10, 319
CviQI	GTAC	4 cut(s)	164, 396, 549, 739
DdeI	CTNAG	3 cut(s)	614, 624, 713
DpnI	GATC	1 cut(s)	629
DpnII	GATC	1 cut(s)	627
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	326, 534
EarI	CTCTTC	2 cut(s)	326, 534
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	2 cut(s)	39, 348
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	107, 245
Eco53kI	GAGCTC	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	712
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	2 cut(s)	107, 245
EcoRII	CCWGG	2 cut(s)	324, 754
EcoT14I	CCWWGG	2 cut(s)	39, 348
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	39, 348
FaeI	CATG	2 cut(s)	13, 322
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	2 cut(s)	9, 318
Fnu4HI	GCNGC	4 cut(s)	36, 267, 413, 621
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	4 cut(s)	36, 267, 413, 621
FspBI	CTAG	2 cut(s)	111, 567
GluI	GCNGC	4 cut(s)	36, 267, 413, 621
GsuI	CTGGAG	2 cut(s)	285, 671
HaeIII	GGCC	3 cut(s)	347, 476, 584
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	13, 322
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	3 cut(s)	340, 397, 521
Hpy166II	GTNNAC	2 cut(s)	84, 164
Hpy188I	TCNGA	4 cut(s)	627, 645, 666, 716
Hpy188III	TCNNGA	2 cut(s)	302, 688
Hpy8I	GTNNAC	2 cut(s)	84, 164
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	50, 341, 378, 602, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	614, 624, 713
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	13, 322
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	627
Lsp1109I	GCAGC	4 cut(s)	47, 253, 399, 607
MaeI	CTAG	2 cut(s)	111, 567
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	4 cut(s)	5, 76, 185, 385
MalI	GATC	1 cut(s)	629
MboI	GATC	1 cut(s)	627
MboII	GAAGA	4 cut(s)	343, 381, 521, 602
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	2 cut(s)	523, 714
MluCI	AATT	7 cut(s)	146, 190, 256, 543, 597, 659, 731
MseI	TTAA	3 cut(s)	149, 284, 365
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	3 cut(s)	104, 326, 756
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	326, 756
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	627
NlaIII	CATG	2 cut(s)	13, 322
NlaIV	GGNNCC	2 cut(s)	108, 397
NmuCI	GTSAC	2 cut(s)	5, 385
PceI	AGGCCT	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	37, 268, 414, 622
PpuMI	RGGWCCY	2 cut(s)	107, 245
Psp124BI	GAGCTC	1 cut(s)	714
Psp5II	RGGWCCY	2 cut(s)	107, 245
Psp6I	CCWGG	2 cut(s)	324, 754
PspGI	CCWGG	2 cut(s)	324, 754
PspN4I	GGNNCC	2 cut(s)	108, 397
PspPI	GGNCC	2 cut(s)	107, 245
PspPPI	RGGWCCY	2 cut(s)	107, 245
RsaI	GTAC	4 cut(s)	165, 397, 550, 740
RsaNI	GTAC	4 cut(s)	164, 396, 549, 739
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	149, 284, 365
SatI	GCNGC	4 cut(s)	36, 267, 413, 621
Sau3AI	GATC	1 cut(s)	627
Sau96I	GGNCC	2 cut(s)	107, 245
ScrFI	CCNGG	3 cut(s)	104, 326, 756
SduI	GDGCHC	2 cut(s)	523, 714
SinI	GGWCC	2 cut(s)	107, 245
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	7 cut(s)	146, 190, 256, 543, 597, 659, 731
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	111, 567
SstI	GAGCTC	1 cut(s)	714
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	102, 324, 754
StyI	CCWWGG	2 cut(s)	39, 348
TaiI	ACGT	1 cut(s)	83
TasI	AATT	7 cut(s)	146, 190, 256, 543, 597, 659, 731
Tru1I	TTAA	3 cut(s)	149, 284, 365
Tru9I	TTAA	3 cut(s)	149, 284, 365
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	5, 385
TseI	GCWGC	4 cut(s)	35, 266, 412, 620
Tsp45I	GTSAC	2 cut(s)	5, 385
TspRI	CASTG	1 cut(s)	637
VpaK11BI	GGWCC	2 cut(s)	107, 245
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	2 cut(s)	659, 731
XspI	CTAG	2 cut(s)	111, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.