MD15G1395800.v1.1
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0021144
Physical Location & Seq
Reverse (-)
49552979 .. 49558812
5834 bp
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UTR
Exon/CDS
Intron
MD15G1395800.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGCTAAAAATACGACTAAGCATGAATTGATTTCTCATGAACCAAGCAGGAGAGCAACCTTAAAAAAGAGGAAGGCTAGTTTCTTCAGAAAGCTGAATGAGATCACAACTTCATGCGGGGTTATTGCATGTGCTGTTATTTACAATACTTCTGATACCAAGGCGGATGTGTGGCCTTCCCATAGGAAGCATTTTATGTACTCGAAAAATTCAAGAATTTACCTGAAGAAAGGCAAGGTAAGTTCATGGTGGATCAAGAATCCTTTCTTAAGAACAATATATCCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

97

Amino Acids

11.23

Weight (kDa)

10.37

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 51 8.3e-09 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021144)

Species Orthologous Gene IDs
malus_domestica MD15G1395800.v1.1 MD15G1396300.v1.1 MD15G1407500.v1.1
prunus_persica Prupe.1G554100_v2.0.a1
pyrus_communis pycom08g19010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 164
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 208, 216
AcuI CTGAAG 2 cut(s) 70, 245
AfaI GTAC 1 cut(s) 200
AflII CTTAAG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 213
AloI GAACNNNNNNTCC 1 cut(s) 265
AluBI AGCT 2 cut(s) 94, 288
AluI AGCT 2 cut(s) 94, 288
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 208, 216
Asp700I GAANNNNTTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 172
BshFI GGCC 1 cut(s) 175
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 102, 252
BspACI CCGC 2 cut(s) 117, 164
BspANI GGCC 1 cut(s) 175
BspHI TCATGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 102, 252
BssT1I CCWWGG 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 105, 255
BstMBI GATC 2 cut(s) 102, 252
BstNSI RCATGY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 172
CciI TCATGA 1 cut(s) 37
Csp6I GTAC 1 cut(s) 199
CviAII CATG 5 cut(s) 23, 38, 114, 129, 246
CviJI RGCY 5 cut(s) 5, 77, 94, 175, 288
CviKI_1 RGCY 5 cut(s) 5, 77, 94, 175, 288
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 104, 254
DpnII GATC 2 cut(s) 102, 252
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 70, 245
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 5 cut(s) 26, 41, 117, 132, 249
FaiI YATR 8 cut(s) 24, 39, 115, 130, 183, 197, 247, 280
FatI CATG 5 cut(s) 22, 37, 113, 128, 245
FauI CCCGC 1 cut(s) 110
FokI GGATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 5 cut(s) 26, 41, 117, 132, 249
HinfI GANTC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 89, 154
Hpy188III TCNNGA 3 cut(s) 38, 213, 256
HpyAV CCTTC 2 cut(s) 67, 186
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 5 cut(s) 26, 41, 117, 132, 249
Kzo9I GATC 2 cut(s) 102, 252
LpnPI CCDG 2 cut(s) 34, 236
MaeI CTAG 1 cut(s) 78
MalI GATC 2 cut(s) 104, 254
MboI GATC 2 cut(s) 102, 252
MboII GAAGA 2 cut(s) 76, 238
MluCI AATT 3 cut(s) 26, 208, 216
MnlI CCTC 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 62, 269
MspCI CTTAAG 1 cut(s) 268
NdeII GATC 2 cut(s) 102, 252
NlaIII CATG 5 cut(s) 26, 41, 117, 132, 249
NspI RCATGY 1 cut(s) 132
PagI TCATGA 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 259
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 62, 269
Sau3AI GATC 2 cut(s) 102, 252
SetI ASST 5 cut(s) 62, 96, 225, 240, 290
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 3 cut(s) 26, 208, 216
SsiI CCGC 2 cut(s) 117, 164
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 159
TaqI TCGA 1 cut(s) 203
TasI AATT 3 cut(s) 26, 208, 216
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 62, 269
Tru9I TTAA 2 cut(s) 62, 269
TspDTI ATGAA 4 cut(s) 39, 54, 102, 234
Vha464I CTTAAG 1 cut(s) 268
XapI RAATTY 2 cut(s) 208, 216
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.