pycom08g19010

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0021144
Physical Location & Seq
Forward (+)
19070716 .. 19071372
657 bp
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UTR
Exon/CDS
Intron
pycom08g19010.1

Sequence Viewer

Length: 657 bp
ATGCAACTTCCAGAAGGTACCTGTTGCTTCTTTGTATTCTCAACCATGGCTAAAAATAGGACTAAGCGTGAATTGATTTCTCATGAACCAAGCAGGAGAGCAACCTTCAAAAATAGGAAGGCAAGTTTCTTCAGAAAGCTGAATGAGATCACAACTTTATGTGGTGTTATTGCATGCGCTGTTATTTACAATCCTTCTGATACCAAGACAGACGTGTGGCCTTCTCCACAAGAAGCATTTTATGTACTCGAAAAATTCAAGAATTTATCTGAAGAAAGGCGAGGCAAGTTCATGGTGGATCAAGAATCCTTTCTCAAGAACAATATATCTAAGCTGAACAGACAATTGGAAAGAGCGAGATTTAAGAATCAAGAACTTGATGAGAAGCTACTTTTGATTGAATACCTAGAAGGTAAGAATTTTCTTGATCCTGGTCGCCTTGAAAGTTTGAACGGACTTGATCAACAATTGGATAAAAGAATTGATTTCATTACTAATAGGATTGAGTTCTTAGAGGGTCTGAGGCGCAACCAAGTCGATGCTGAACTCGATTCTGATGGGATGGTGGTCCGTGGTATTAAGGGGGAGTCGTTGGCGACAACCAAGGTTAATTTATTGTCTGTTGGGGGAAGTAGTAGTGCAAGCCATTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

219

Amino Acids

24.98

Weight (kDa)

9.01

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 26 - 67 3.6e-10 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021144)

Species Orthologous Gene IDs
malus_domestica MD15G1395800.v1.1 MD15G1396300.v1.1 MD15G1407500.v1.1
prunus_persica Prupe.1G554100_v2.0.a1
pyrus_communis pycom08g19010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AclWI GGATC 2 cut(s) 306, 422
AcsI RAATTY 3 cut(s) 254, 262, 418
AcuI CTGAAG 2 cut(s) 115, 291
AfaI GTAC 2 cut(s) 19, 246
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 6 cut(s) 109, 259, 401, 443, 451, 651
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 430
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 3 cut(s) 139, 334, 388
AluI AGCT 3 cut(s) 139, 334, 388
AlwI GGATC 2 cut(s) 306, 422
AoxI GGCC 1 cut(s) 218
ApoI RAATTY 3 cut(s) 254, 262, 418
Asp700I GAANNNNTTC 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 17
AspLEI GCGC 2 cut(s) 179, 528
AspS9I GGNCC 1 cut(s) 568
AvaII GGWCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 17
BccI CCATC 2 cut(s) 551, 556
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciT130I CCWGG 1 cut(s) 432
BclI TGATCA 1 cut(s) 460
BfaI CTAG 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 568
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 45, 571, 603
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 3 cut(s) 45, 571, 603
BseGI GGATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 512
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 17
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 147, 298, 427, 460
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 513
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 306, 422
BspT107I GGYRCC 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 45, 571, 603
BssMI GATC 4 cut(s) 147, 298, 427, 460
BssT1I CCWWGG 2 cut(s) 45, 603
Bst2UI CCWGG 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 175, 643
BstDEI CTNAG 4 cut(s) 63, 330, 511, 521
BstDSI CCRYGG 2 cut(s) 45, 571
BstF5I GGATG 1 cut(s) 567
BstHHI GCGC 2 cut(s) 179, 528
BstKTI GATC 4 cut(s) 150, 301, 430, 463
BstMBI GATC 4 cut(s) 147, 298, 427, 460
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 430
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 2 cut(s) 45, 571
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 567
Cac8I GCNNGC 2 cut(s) 175, 643
CciI TCATGA 1 cut(s) 82
CfoI GCGC 2 cut(s) 179, 528
Cfr13I GGNCC 1 cut(s) 568
Csp6I GTAC 2 cut(s) 18, 245
CviAII CATG 4 cut(s) 46, 83, 174, 292
CviJI RGCY 6 cut(s) 50, 139, 220, 334, 388, 645
CviKI_1 RGCY 6 cut(s) 50, 139, 220, 334, 388, 645
CviQI GTAC 2 cut(s) 18, 245
DdeI CTNAG 4 cut(s) 63, 330, 511, 521
DpnI GATC 4 cut(s) 149, 300, 429, 462
DpnII GATC 4 cut(s) 147, 298, 427, 460
Eco130I CCWWGG 2 cut(s) 45, 603
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 115, 291
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 45, 603
ErhI CCWWGG 2 cut(s) 45, 603
FaeI CATG 4 cut(s) 49, 86, 177, 295
FaiI YATR 7 cut(s) 47, 84, 160, 175, 243, 293, 326
FatI CATG 4 cut(s) 45, 82, 173, 291
FbaI TGATCA 1 cut(s) 460
FokI GGATG 1 cut(s) 574
FspBI CTAG 1 cut(s) 407
GlaI GCGC 2 cut(s) 178, 527
HaeIII GGCC 1 cut(s) 220
HhaI GCGC 2 cut(s) 179, 528
Hin1II CATG 4 cut(s) 49, 86, 177, 295
Hin6I GCGC 2 cut(s) 177, 526
HinP1I GCGC 2 cut(s) 177, 526
HinfI GANTC 4 cut(s) 305, 367, 551, 587
Hpy188I TCNGA 5 cut(s) 134, 199, 271, 522, 556
Hpy188III TCNNGA 7 cut(s) 11, 83, 259, 302, 316, 371, 425
HpyAV CCTTC 6 cut(s) 8, 112, 115, 204, 231, 404
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 4, 173, 641
HpyF3I CTNAG 4 cut(s) 63, 330, 511, 521
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 4 cut(s) 49, 86, 177, 295
HspAI GCGC 2 cut(s) 177, 526
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 147, 298, 427, 460
LpnPI CCDG 5 cut(s) 24, 34, 79, 417, 444
LweI GCATC 1 cut(s) 529
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 213
MalI GATC 4 cut(s) 149, 300, 429, 462
MboI GATC 4 cut(s) 147, 298, 427, 460
MboII GAAGA 2 cut(s) 121, 284
MfeI CAATTG 2 cut(s) 344, 467
MluCI AATT 8 cut(s) 71, 254, 262, 344, 418, 467, 480, 610
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 3 cut(s) 275, 508, 516
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 3 cut(s) 363, 579, 609
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 2 cut(s) 344, 467
MvaI CCWGG 1 cut(s) 432
NcoI CCATGG 1 cut(s) 45
NdeII GATC 4 cut(s) 147, 298, 427, 460
NlaIII CATG 4 cut(s) 49, 86, 177, 295
NlaIV GGNNCC 1 cut(s) 19
NspI RCATGY 1 cut(s) 177
PaeI GCATGC 1 cut(s) 177
PagI TCATGA 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 305, 367, 551
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 568
RsaI GTAC 2 cut(s) 19, 246
RsaNI GTAC 2 cut(s) 18, 245
SaqAI TTAA 3 cut(s) 363, 579, 609
Sau3AI GATC 4 cut(s) 147, 298, 427, 460
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 432
SfaNI GCATC 1 cut(s) 529
SinI GGWCC 1 cut(s) 568
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 177
Sse9I AATT 8 cut(s) 71, 254, 262, 344, 418, 467, 480, 610
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 2 cut(s) 45, 603
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 249, 537, 549
TasI AATT 8 cut(s) 71, 254, 262, 344, 418, 467, 480, 610
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 3 cut(s) 305, 367, 551
Tru1I TTAA 3 cut(s) 363, 579, 609
Tru9I TTAA 3 cut(s) 363, 579, 609
TspDTI ATGAA 3 cut(s) 99, 280, 478
TspGWI ACGGA 2 cut(s) 468, 560
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 3 cut(s) 254, 262, 418
XceI RCATGY 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.