MD15G1407500.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0021144
Physical Location & Seq
Forward (+)
50773421 .. 50773879
459 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1407500.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGCTAAAAATAGGACTAAGCATGAATTGATTTCTCATGAACGAAGCAGGAGAGCAACCTTAAAAAAGAGGAAGGCTAGCTTCTTCAGAAAGCTGAATGAGATCACAACTTTATGCGGGGTTATTGCATGTGCTGTTATTTACGATACTTCTGATACCAAGGTGGACGTGTGGCCTTCTCCACAGGAAGCATTTTATGTACTCGAAAAAATCAAGAATTTACCTGAAGAAAGGCAAGGTAAGTTTAAACTGGATCAAGAATCCTTTCTTAAGAACAATATATCCAAGCAGAACAGACAATTGGAAAGAGTGAGATTTAAGAATCAAGAACTTGATGAGAAGCTGCTTTTGATTGAATACCCGGAACTGGAAGGTAAGAATTTTCTTGATCCTGGTCGTCTTGAAAGTTTGATTGGACTTGATGATCAGTTGGATAAAAGAATTGATTTCCTTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

153

Amino Acids

17.91

Weight (kDa)

9.04

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 53 1.6e-10 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021144)

Species Orthologous Gene IDs
malus_domestica MD15G1395800.v1.1 MD15G1396300.v1.1 MD15G1407500.v1.1
prunus_persica Prupe.1G554100_v2.0.a1
pyrus_communis pycom08g19010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AclWI GGATC 2 cut(s) 261, 383
AcsI RAATTY 2 cut(s) 217, 379
AcuI CTGAAG 2 cut(s) 70, 246
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 367
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 356, 404
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 391
AjuI GAANNNNNNNTTGG 4 cut(s) 284, 316, 396, 428
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 3 cut(s) 81, 94, 343
AluI AGCT 3 cut(s) 81, 94, 343
AlwI GGATC 2 cut(s) 261, 383
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 217, 379
Asp700I GAANNNNTTC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 362
AsuNHI GCTAGC 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BbvI GCAGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 393
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 362
BfaI CTAG 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 362, 393
BmgBI CACGTC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 362, 393
BmtI GCTAGC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 255, 372
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 367
BseNI ACTGG 2 cut(s) 255, 372
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 367
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 4 cut(s) 102, 253, 388, 424
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 175
BspHI TCATGA 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 81
BspPI GGATC 2 cut(s) 261, 383
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 255, 372
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 4 cut(s) 102, 253, 388, 424
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 393
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 18, 456
BstKTI GATC 4 cut(s) 105, 256, 391, 427
BstMBI GATC 4 cut(s) 102, 253, 388, 424
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 360, 391
BstV1I GCAGC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 175
BtrI CACGTC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 79
CciI TCATGA 1 cut(s) 37
Csp6I GTAC 1 cut(s) 200
CviAII CATG 3 cut(s) 23, 38, 129
CviJI RGCY 6 cut(s) 5, 77, 81, 94, 175, 343
CviKI_1 RGCY 6 cut(s) 5, 77, 81, 94, 175, 343
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 2 cut(s) 18, 456
DpnI GATC 4 cut(s) 104, 255, 390, 426
DpnII GATC 4 cut(s) 102, 253, 388, 424
DraI TTTAAA 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 70, 246
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 26, 41, 132
FaiI YATR 6 cut(s) 24, 39, 115, 130, 198, 281
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 3 cut(s) 22, 37, 128
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 344
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 344
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 362
Hin1II CATG 3 cut(s) 26, 41, 132
HinfI GANTC 2 cut(s) 260, 322
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 89, 154
Hpy188III TCNNGA 6 cut(s) 38, 214, 257, 326, 386, 401
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 67, 186, 365
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 18, 456
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 26, 41, 132
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 102, 253, 388, 424
LpnPI CCDG 8 cut(s) 34, 170, 236, 237, 353, 375, 378, 405
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 168
MalI GATC 4 cut(s) 104, 255, 390, 426
MboI GATC 4 cut(s) 102, 253, 388, 424
MboII GAAGA 2 cut(s) 76, 239
MfeI CAATTG 1 cut(s) 299
MluCI AATT 5 cut(s) 26, 217, 299, 379, 441
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 4 cut(s) 62, 246, 270, 318
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 362, 393
MssI GTTTAAAC 1 cut(s) 247
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 393
NciI CCSGG 1 cut(s) 362
NdeII GATC 4 cut(s) 102, 253, 388, 424
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 3 cut(s) 26, 41, 132
NspI RCATGY 1 cut(s) 132
PagI TCATGA 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 260, 322
PkrI GCNGC 1 cut(s) 345
PmeI GTTTAAAC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 4 cut(s) 62, 246, 270, 318
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 4 cut(s) 102, 253, 388, 424
ScrFI CCNGG 2 cut(s) 362, 393
SetI ASST 9 cut(s) 62, 83, 96, 165, 171, 226, 241, 345, 376
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 5 cut(s) 26, 217, 299, 379, 441
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 360, 391
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 204
TasI AATT 5 cut(s) 26, 217, 299, 379, 441
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 2 cut(s) 260, 322
Tru1I TTAA 4 cut(s) 62, 246, 270, 318
Tru9I TTAA 4 cut(s) 62, 246, 270, 318
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 39, 54
Vha464I CTTAAG 1 cut(s) 269
XapI RAATTY 2 cut(s) 217, 379
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.