Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013439

Physical Location & Seq

Genomic Coordinates Reverse (-)

353770 .. 361929

Gene Structure 8160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1004700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTTGGACCAGTGGATCTCAAAGGTGAAGGAAGGACAGCATCTTCTGGAGGACGAGCTTCAACTCCTATGCGAATACGTAAAAGAGATTCTTATTGAGGAGTCCAATGTGCAACCTGTAAACAGTCCGGTCACTGTTTGTGGCGATATTCATGGCCAATTCCACGACCTAATGAAACTTTTCCAGACTGGAGGCCATGTACCAGAGACAAATTACATATTTATGGGCGATTTTGTTGATCGAGGATACAATAGCCTTGAAGTTTTCACTATCCTTTTGCTTCTTAAGGCGAGATATCCAGCTAATATTACCCTTTTGCGTGGTAATCATGAGAGCAGGCAACTTACCCAGGTATATGGCTTTTATGACGAATGCCAGAGGAAGTATGGAAATGCTAATGCCTGGCGGTATTGTACAGATGTTTTTGACTATCTGACACTATCGGCAATTATAGATGGAACTGTGTTATGTGTCCATGGTGGACTTTCTCCTGACATCCGAACAATTGATCAGATACGGGTCATTGAGCGAAATTGTGAAATTCCACATGAGGGGCCATTTTGTGATCTCATGTGGAGCGATCCTGAAGATATTGAAACATGGGCAGTAAGTCCGCGTGGAGCAGGTTGGCTGTTTGGATCCAGAGTCACTTCTGAGTTCAACCACATAAACAATCTAGATCTGGTTTGTCGAGCACACCAACTTGTTCAAGAAGGTCTTAAGTACATGTTTCAAGATAAAGGCCTTGTAACTGTCTGGTCTGCACCAAATTACTGTTATCGCTGTGGGAATGTGGCTTCTATCTTGAGTTTTAATGACAATATGGAGAGAGAGGTGAAGTTCTTCACTGAAACAGAGGAGAACAACCAGATGAGAGGACCGAGGACAGGAGTACCTTATTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009909 GO:0009910 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1903293 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

304

Amino Acids

34.87

Weight (kDa)

4.88

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	44 - 237	3e-47	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50370 AT3G19980
fragaria_vesca	FvH4_4g37310
malus_domestica	MD13G1001400.v1.1 MD16G1004700.v1.1
prunus_persica	Prupe.1G351300_v2.0.a1 Prupe.1G351300_v2.0.a1
pyrus_communis	pycom16g00010
rosa_chinensis	RchiOBHm_Chr4g0447141
rosa_laevigata	RLG00000005601
rosa_multiflora	Rmu_ssc0000178.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387480
rosa_rugosa	Rorug04G0378500
rosa_samantha	Rh4AG439700 Rh4BG448800 Rh4CG465800 Rh4DG447200
rosa_wichuraiana	Rw4G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	617
AccII	CGCG	1 cut(s)	619
AciI	CCGC	2 cut(s)	409, 617
AclWI	GGATC	4 cut(s)	26, 578, 636, 649
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	4 cut(s)	204, 418, 728, 897
AfiI	CCNNNNNNNGG	2 cut(s)	554, 890
AflII	CTTAAG	2 cut(s)	287, 722
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	6 cut(s)	65, 263, 599, 664, 713, 737
AjnI	CCWGG	2 cut(s)	351, 404
AluBI	AGCT	2 cut(s)	61, 305
AluI	AGCT	2 cut(s)	61, 305
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	4 cut(s)	26, 578, 636, 649
AoxI	GGCC	4 cut(s)	157, 196, 557, 745
ApoI	RAATTY	1 cut(s)	543
Asp700I	GAANNNNTTC	2 cut(s)	182, 845
AspS9I	GGNCC	3 cut(s)	10, 557, 881
AsuHPI	GGTGA	2 cut(s)	40, 850
AvaII	GGWCC	2 cut(s)	10, 881
BaeI	ACNNNNGTAYC	2 cut(s)	879, 912
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	700
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	2 cut(s)	353, 406
BciVI	GTATCC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	680
BfrI	CTTAAG	2 cut(s)	287, 722
BfuAI	ACCTGC	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	682
Bme1390I	CCNGG	2 cut(s)	353, 406
Bme18I	GGWCC	2 cut(s)	10, 881
BmgT120I	GGNCC	3 cut(s)	10, 557, 881
BmiI	GGNNCC	2 cut(s)	558, 643
BmrFI	CCNGG	2 cut(s)	353, 406
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	2 cut(s)	71, 213
BpuEI	CTTGAG	1 cut(s)	829
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	351, 478, 884
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 890
Bse1I	ACTGG	2 cut(s)	13, 196
BseBI	CCWGG	2 cut(s)	353, 406
BseDI	CCNNGG	3 cut(s)	351, 478, 884
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	554, 890
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	2 cut(s)	13, 196
BseRI	GAGGAG	2 cut(s)	116, 875
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	619
BshFI	GGCC	4 cut(s)	159, 198, 559, 747
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	554, 890
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	159, 198, 559, 747
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	2 cut(s)	409, 617
BspANI	GGCC	4 cut(s)	159, 198, 559, 747
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	558, 643
BspMI	ACCTGC	1 cut(s)	617
BspPI	GGATC	4 cut(s)	26, 578, 636, 649
BspTI	CTTAAG	2 cut(s)	287, 722
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	13, 196
BssECI	CCNNGG	3 cut(s)	351, 478, 884
BssMI	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	353, 406
Bst4CI	ACNGT	5 cut(s)	128, 139, 466, 757, 779
BstAFI	CTTAAG	2 cut(s)	287, 722
BstAUI	TGTACA	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	619
BstKTI	GATC	7 cut(s)	21, 244, 514, 571, 586, 644, 685
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
BstNI	CCWGG	2 cut(s)	353, 406
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	351, 404
BstSNI	TACGTA	1 cut(s)	82
BstUI	CGCG	1 cut(s)	619
BstX2I	RGATCY	3 cut(s)	18, 641, 682
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	3 cut(s)	18, 641, 682
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	159, 198, 559, 747
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	20, 135, 849
BveI	ACCTGC	1 cut(s)	617
Cac8I	GCNNGC	1 cut(s)	341
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	10, 557, 881
Csp6I	GTAC	4 cut(s)	203, 417, 727, 896
CviAII	CATG	8 cut(s)	155, 200, 332, 479, 551, 574, 603, 730
CviQI	GTAC	4 cut(s)	203, 417, 727, 896
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	7 cut(s)	20, 243, 513, 570, 585, 643, 684
DpnII	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
EaeI	YGGCCR	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	747
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	10, 881
Eco57I	CTGAAG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	351, 404
EcoRV	GATATC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	8 cut(s)	158, 203, 335, 482, 554, 577, 606, 733
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 705, 737
FatI	CATG	8 cut(s)	154, 199, 331, 478, 550, 573, 602, 729
FbaI	TGATCA	1 cut(s)	511
FokI	GGATG	1 cut(s)	485
FspBI	CTAG	1 cut(s)	680
GsuI	CTGGAG	2 cut(s)	71, 213
HaeIII	GGCC	4 cut(s)	159, 198, 559, 747
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	8 cut(s)	158, 203, 335, 482, 554, 577, 606, 733
HinfI	GANTC	3 cut(s)	91, 104, 648
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	2 cut(s)	40, 850
Hpy166II	GTNNAC	2 cut(s)	124, 485
Hpy188I	TCNGA	4 cut(s)	438, 503, 516, 658
Hpy8I	GTNNAC	2 cut(s)	124, 485
HpyAV	CCTTC	3 cut(s)	25, 29, 710
HpyCH4III	ACNGT	5 cut(s)	128, 139, 466, 757, 779
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	115, 767
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	8 cut(s)	158, 203, 335, 482, 554, 577, 606, 733
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
LmnI	GCTCC	2 cut(s)	579, 623
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	133, 649, 751
MalI	GATC	7 cut(s)	20, 243, 513, 570, 585, 643, 684
MboI	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
MboII	GAAGA	3 cut(s)	38, 602, 838
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	3 cut(s)	18, 641, 682
MhlI	GDGCHC	1 cut(s)	700
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	7 cut(s)	161, 214, 450, 507, 535, 543, 772
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	113, 657
Mox20I	TGGCCA	1 cut(s)	159
MroXI	GAANNNNTTC	2 cut(s)	182, 845
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	3 cut(s)	288, 723, 816
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	159
MspCI	CTTAAG	2 cut(s)	287, 722
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	353, 406
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	353, 406
MvnI	CGCG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
NlaIII	CATG	8 cut(s)	158, 203, 335, 482, 554, 577, 606, 733
NlaIV	GGNNCC	2 cut(s)	558, 643
NmuCI	GTSAC	2 cut(s)	133, 649
NspI	RCATGY	1 cut(s)	733
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	747
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	182, 845
PfeI	GAWTC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	112, 656
PpsI	GAGTC	2 cut(s)	112, 656
Ppu21I	YACGTR	1 cut(s)	82
PscI	ACATGT	1 cut(s)	729
Psp6I	CCWGG	2 cut(s)	351, 404
PspGI	CCWGG	2 cut(s)	351, 404
PspN4I	GGNNCC	2 cut(s)	558, 643
PspPI	GGNCC	3 cut(s)	10, 557, 881
PsuI	RGATCY	3 cut(s)	18, 641, 682
RsaI	GTAC	4 cut(s)	204, 418, 728, 897
RsaNI	GTAC	4 cut(s)	203, 417, 727, 896
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	288, 723, 816
Sau3AI	GATC	7 cut(s)	18, 241, 511, 568, 583, 641, 682
Sau96I	GGNCC	3 cut(s)	10, 557, 881
SchI	GAGTC	2 cut(s)	113, 657
ScrFI	CCNGG	2 cut(s)	353, 406
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	2 cut(s)	10, 881
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	287, 722, 808
SmoI	CTYRAG	3 cut(s)	287, 722, 808
SnaBI	TACGTA	1 cut(s)	82
Sse9I	AATT	7 cut(s)	161, 214, 450, 507, 535, 543, 772
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	2 cut(s)	409, 617
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	680
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	351, 404
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	5 cut(s)	128, 139, 466, 757, 779
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	244, 694
TaqII	GACCGA	1 cut(s)	898
TasI	AATT	7 cut(s)	161, 214, 450, 507, 535, 543, 772
TatI	WGTACW	2 cut(s)	416, 726
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	288, 723, 816
Tru9I	TTAA	3 cut(s)	288, 723, 816
TscAI	CASTG	3 cut(s)	20, 142, 856
TseFI	GTSAC	2 cut(s)	133, 649
Tsp45I	GTSAC	2 cut(s)	133, 649
TspDTI	ATGAA	2 cut(s)	143, 191
TspRI	CASTG	3 cut(s)	20, 142, 856
Vha464I	CTTAAG	2 cut(s)	287, 722
VpaK11BI	GGWCC	2 cut(s)	10, 881
XapI	RAATTY	1 cut(s)	543
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmnI	GAANNNNTTC	2 cut(s)	182, 845
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.