Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000178.1

Orthogroup ID

OG0013439

Physical Location & Seq

Genomic Coordinates Forward (+)

14285 .. 19331

Gene Structure 5047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000178.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggatttggaccagtggatctcaaaggtcaaggaagggcagcatctcttggaggacgagcttcaacttctatgtgaatacgttcgtatttctcttcctttctttacttctagggtaaaagagatccttattgaggagtccaatgtgcagcctgtaaacagtccagttactgtttgtggtgatattcatggtcagtttcacgatctaatgaaacttttccagactggaggccatgtaccagagaccaattacatattcatgggcgattttgtggatcgtggttacaatagtcttgaagttttcactatccttttgcttcttaaggcgagatatccagctaacattacgcttttgcgtggtaatcatgaaagcagacaacttacccaggtatatgggttttatgatgaatgccagaggaagtatggaaatgctaatgcatggcgctattgtacagatgtttttgactatctgacgctatcagcaattatagatggaactgtgctatgtgtccatggtggtctttctcctgacattcgaacaattgatcagattagggtcattgagcgaaattgtgaaattccacatgaggggccattttgtgatctcatgtggagtgatcctgaagatattgaaacatgggcggtaagtccacgtggagcaggttggctttttgggtccagagtcacttctgagttcaaccacataaataatcttgatctggtttgtcgagcacaccaactcgttcaagaaggtcttaagtacatgtttcaagataaaggccttgtaactgtctggtctgcgccaaattactgttaccgctgtgggaatgtagcttctattttaagttttaacgagaatatggagagagaagtgaagttcttcactgaaacagaggagaacaaccagatgagaggaccaagaacaggagtaccttatttcttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009909 GO:0009910 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1903293 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

314

Amino Acids

36.19

Weight (kDa)

5.02

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50370 AT3G19980
fragaria_vesca	FvH4_4g37310
malus_domestica	MD13G1001400.v1.1 MD16G1004700.v1.1
prunus_persica	Prupe.1G351300_v2.0.a1 Prupe.1G351300_v2.0.a1
pyrus_communis	pycom16g00010
rosa_chinensis	RchiOBHm_Chr4g0447141
rosa_laevigata	RLG00000005601
rosa_multiflora	Rmu_ssc0000178.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387480
rosa_rugosa	Rorug04G0378500
rosa_samantha	Rh4AG439700 Rh4BG448800 Rh4CG465800 Rh4DG447200
rosa_wichuraiana	Rw4G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	650
AciI	CCGC	2 cut(s)	641, 817
AclWI	GGATC	4 cut(s)	26, 118, 282, 611
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	642
AcvI	CACGTG	1 cut(s)	653
AfaI	GTAC	4 cut(s)	237, 451, 761, 930
AfiI	CCNNNNNNNGG	3 cut(s)	133, 587, 923
AflII	CTTAAG	2 cut(s)	320, 755
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	6 cut(s)	65, 296, 632, 697, 746, 770
AjnI	CCWGG	1 cut(s)	384
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	61, 338, 833
AluI	AGCT	3 cut(s)	61, 338, 833
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	4 cut(s)	26, 118, 282, 611
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	229, 590, 778
ApeKI	GCWGC	2 cut(s)	40, 148
ApoI	RAATTY	1 cut(s)	576
Asp700I	GAANNNNTTC	3 cut(s)	81, 215, 878
AspLEI	GCGC	2 cut(s)	444, 802
AspS9I	GGNCC	4 cut(s)	10, 590, 675, 914
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	535
AvaII	GGWCC	3 cut(s)	10, 675, 914
BaeI	ACNNNNGTAYC	2 cut(s)	912, 945
BbrPI	CACGTG	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	52, 160
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	445
BfrI	CTTAAG	2 cut(s)	320, 755
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	2 cut(s)	41, 149
BlsI	GCNGC	2 cut(s)	42, 150
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	3 cut(s)	10, 675, 914
BmgT120I	GGNCC	4 cut(s)	10, 590, 675, 914
BmiI	GGNNCC	2 cut(s)	591, 676
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	535
BsaAI	YACGTR	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	384, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 587, 923
Bse1I	ACTGG	3 cut(s)	13, 164, 229
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	384, 511
BseLI	CCNNNNNNNGG	3 cut(s)	133, 587, 923
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	3 cut(s)	13, 164, 229
BseRI	GAGGAG	2 cut(s)	149, 908
BseXI	GCAGC	2 cut(s)	52, 160
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	231, 592, 780
BsiHKAI	GWGCWC	1 cut(s)	733
BslI	CCNNNNNNNGG	3 cut(s)	133, 587, 923
BsmAI	GTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	231, 592, 780
Bso31I	GGTCTC	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	2 cut(s)	641, 817
BspANI	GGCC	3 cut(s)	231, 592, 780
BspCNI	CTCAG	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	591, 676
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	4 cut(s)	26, 118, 282, 611
BspT104I	TTCGAA	1 cut(s)	535
BspTI	CTTAAG	2 cut(s)	320, 755
BspTNI	GGTCTC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	13, 164, 229
BssECI	CCNNGG	2 cut(s)	384, 511
BssMI	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	5 cut(s)	161, 172, 499, 790, 812
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	2 cut(s)	320, 755
BstAUI	TGTACA	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	535
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	2 cut(s)	444, 802
BstKTI	GATC	8 cut(s)	21, 126, 205, 277, 547, 604, 619, 718
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	766
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	52, 160
BstX2I	RGATCY	2 cut(s)	18, 123
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	2 cut(s)	18, 123
BsuRI	GGCC	3 cut(s)	231, 592, 780
BtgI	CCRYGG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	20, 882
BveI	ACCTGC	1 cut(s)	650
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	2 cut(s)	444, 802
Cfr13I	GGNCC	4 cut(s)	10, 590, 675, 914
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	236, 450, 760, 929
CviJI	RGCY	8 cut(s)	61, 151, 231, 338, 592, 667, 780, 833
CviKI_1	RGCY	8 cut(s)	61, 151, 231, 338, 592, 667, 780, 833
CviQI	GTAC	4 cut(s)	236, 450, 760, 929
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	8 cut(s)	20, 125, 204, 276, 546, 603, 618, 717
DpnII	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	3 cut(s)	10, 675, 914
Eco57I	CTGAAG	1 cut(s)	642
Eco72I	CACGTG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	511
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 738, 770
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	41, 149
Fsp4HI	GCNGC	2 cut(s)	41, 149
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	2 cut(s)	443, 801
GluI	GCNGC	2 cut(s)	41, 149
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	3 cut(s)	231, 592, 780
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	444, 802
Hin6I	GCGC	2 cut(s)	442, 800
HinP1I	GCGC	2 cut(s)	442, 800
HinfI	GANTC	2 cut(s)	137, 681
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	157, 650
Hpy188I	TCNGA	3 cut(s)	471, 549, 691
Hpy8I	GTNNAC	2 cut(s)	157, 650
HpyAV	CCTTC	2 cut(s)	29, 743
HpyCH4III	ACNGT	5 cut(s)	161, 172, 499, 790, 812
HpyCH4IV	ACGT	2 cut(s)	81, 652
HpyCH4V	TGCA	2 cut(s)	148, 437
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	2 cut(s)	81, 652
HspAI	GCGC	2 cut(s)	442, 800
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	52, 160
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	2 cut(s)	81, 652
MaeIII	GTNAC	5 cut(s)	166, 281, 682, 784, 812
MalI	GATC	8 cut(s)	20, 125, 204, 276, 546, 603, 618, 717
MboI	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
MboII	GAAGA	3 cut(s)	86, 635, 871
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	18, 123
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	6 cut(s)	247, 483, 540, 568, 576, 805
MlyI	GAGTC	2 cut(s)	146, 690
MnlI	CCTC	7 cut(s)	46, 127, 221, 408, 580, 886, 905
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	3 cut(s)	81, 215, 878
MseI	TTAA	4 cut(s)	321, 756, 842, 849
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	819
MspCI	CTTAAG	2 cut(s)	320, 755
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
NlaIV	GGNNCC	2 cut(s)	591, 676
NmuCI	GTSAC	1 cut(s)	682
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	766
NspV	TTCGAA	1 cut(s)	535
PagI	TCATGA	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	780
PciI	ACATGT	1 cut(s)	762
PctI	GAATGC	1 cut(s)	413
PdmI	GAANNNNTTC	3 cut(s)	81, 215, 878
PkrI	GCNGC	2 cut(s)	42, 150
PleI	GAGTC	2 cut(s)	145, 689
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	2 cut(s)	145, 689
Ppu21I	YACGTR	1 cut(s)	653
PscI	ACATGT	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	591, 676
PspPI	GGNCC	4 cut(s)	10, 590, 675, 914
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	18, 123
RsaI	GTAC	4 cut(s)	237, 451, 761, 930
RsaNI	GTAC	4 cut(s)	236, 450, 760, 929
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	321, 756, 842, 849
SatI	GCNGC	2 cut(s)	41, 149
Sau3AI	GATC	8 cut(s)	18, 123, 202, 274, 544, 601, 616, 715
Sau96I	GGNCC	4 cut(s)	10, 590, 675, 914
SchI	GAGTC	2 cut(s)	146, 690
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	3 cut(s)	10, 675, 914
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	320, 755
SmoI	CTYRAG	2 cut(s)	320, 755
Sse9I	AATT	6 cut(s)	247, 483, 540, 568, 576, 805
SseBI	AGGCCT	1 cut(s)	780
SsiI	CCGC	2 cut(s)	641, 817
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	780
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	5 cut(s)	161, 172, 499, 790, 812
TaiI	ACGT	2 cut(s)	84, 655
TaqI	TCGA	2 cut(s)	535, 727
TasI	AATT	6 cut(s)	247, 483, 540, 568, 576, 805
TatI	WGTACW	2 cut(s)	449, 759
Tru1I	TTAA	4 cut(s)	321, 756, 842, 849
Tru9I	TTAA	4 cut(s)	321, 756, 842, 849
TscAI	CASTG	2 cut(s)	20, 889
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	2 cut(s)	40, 148
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	5 cut(s)	176, 224, 247, 381, 420
TspRI	CASTG	2 cut(s)	20, 889
Vha464I	CTTAAG	2 cut(s)	320, 755
VpaK11BI	GGWCC	3 cut(s)	10, 675, 914
XagI	CCTNNNNNAGG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmnI	GAANNNNTTC	3 cut(s)	81, 215, 878
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.