Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013439

Physical Location & Seq

Genomic Coordinates Reverse (-)

69561819 .. 69566300

Gene Structure 4482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG465800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTTGGACCAGTGGATCTCAAAGGTCAAGGAAGGACAGCATCTCTTGGAGGACGAGCTTCAACTTCTATGTGAATACGTAAAAGAGATCCTTATTGAGGAGTCCAATGTGCAGCCTGTAAACAGTCCAGTTACTGTTTGTGGTGATATTCATGGTCAGTTTCACGATCTAATGAAACTTTTCCAGACTGGAGGCCATGTACCAGAGACCAATTACATATTCATGGGCGATTTTGTGGATCGTGGTTACAATAGTCTTGAAGTTTTCACTATCCTTTTGCTTCTTAAGGCAAGATATCCAGCTAACATTACGCTTTTGCGTGGTAATCATGAAAGCAGACAACTTACCCAGGTATATGGTTTTTATGATGAATGCCAGAGGAAGTATGGAAATGCTAATGCATGGCGCTATTGTACAGATGTTTTTGACTATCTGACGCTATCAGCAATTATAGATGGAACTGTGCTATGTGTCCATGGTGGTCTTTCTCCTGACATTCGAACAATTGATCAGATTAGGGTCATTGAGCGAAATTGTGAAATTCCACATGAGGGGCCATTTTGTGATCTCATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTAAGTCCACGTGGAGCAGGTTGGCTTTTTGGGTCCAGAGTCACTTCTGAGTTCAACCACATAAATAATCTTGATCTGGTTTGTCGAGCACACCAACTCGTTCAAGAAGGTCTTAAGTACATGTTTCAAGATAAAGGCCTTGTAACTGTCTGGTCTGCGCCAAATTACTGTTACCGCTGTGGGAATGTAGCTTCTATTTTAAGTTTTAACGAGAATATGGAGAGAGAAGTGAAGTTCTTCACTGAAACAGAGGAGAACAACCAGATGAGAGGACCAAGAACAGGAGTACCTTATTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009909 GO:0009910 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1903293 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

303

Amino Acids

34.89

Weight (kDa)

4.89

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	44 - 237	3e-47	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50370 AT3G19980
fragaria_vesca	FvH4_4g37310
malus_domestica	MD13G1001400.v1.1 MD16G1004700.v1.1
prunus_persica	Prupe.1G351300_v2.0.a1 Prupe.1G351300_v2.0.a1
pyrus_communis	pycom16g00010
rosa_chinensis	RchiOBHm_Chr4g0447141
rosa_laevigata	RLG00000005601
rosa_multiflora	Rmu_ssc0000178.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387480
rosa_rugosa	Rorug04G0378500
rosa_samantha	Rh4AG439700 Rh4BG448800 Rh4CG465800 Rh4DG447200
rosa_wichuraiana	Rw4G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	617
AciI	CCGC	1 cut(s)	784
AclWI	GGATC	4 cut(s)	26, 85, 249, 578
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	609
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	4 cut(s)	204, 418, 728, 897
AfiI	CCNNNNNNNGG	3 cut(s)	100, 554, 890
AflII	CTTAAG	2 cut(s)	287, 722
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	6 cut(s)	65, 263, 599, 664, 713, 737
AjnI	CCWGG	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	3 cut(s)	61, 305, 800
AluI	AGCT	3 cut(s)	61, 305, 800
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	4 cut(s)	26, 85, 249, 578
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	196, 557, 745
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	543
Asp700I	GAANNNNTTC	2 cut(s)	182, 845
AspLEI	GCGC	2 cut(s)	411, 769
AspS9I	GGNCC	4 cut(s)	10, 557, 642, 881
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	502
AvaII	GGWCC	3 cut(s)	10, 642, 881
BaeI	ACNNNNGTAYC	2 cut(s)	879, 912
BbrPI	CACGTG	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	353
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	412
BfrI	CTTAAG	2 cut(s)	287, 722
BfuAI	ACCTGC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	3 cut(s)	10, 642, 881
BmgT120I	GGNCC	4 cut(s)	10, 557, 642, 881
BmiI	GGNNCC	2 cut(s)	558, 643
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	502
BsaAI	YACGTR	2 cut(s)	82, 620
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	351, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 554, 890
Bse1I	ACTGG	3 cut(s)	13, 131, 196
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	351, 478
BseLI	CCNNNNNNNGG	3 cut(s)	100, 554, 890
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	13, 131, 196
BseRI	GAGGAG	2 cut(s)	116, 875
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	198, 559, 747
BsiHKAI	GWGCWC	1 cut(s)	700
BslI	CCNNNNNNNGG	3 cut(s)	100, 554, 890
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	198, 559, 747
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	1 cut(s)	784
BspANI	GGCC	3 cut(s)	198, 559, 747
BspCNI	CTCAG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	558, 643
BspMI	ACCTGC	1 cut(s)	617
BspPI	GGATC	4 cut(s)	26, 85, 249, 578
BspT104I	TTCGAA	1 cut(s)	502
BspTI	CTTAAG	2 cut(s)	287, 722
BspTNI	GGTCTC	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	13, 131, 196
BssECI	CCNNGG	2 cut(s)	351, 478
BssMI	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	5 cut(s)	128, 139, 466, 757, 779
BstAFI	CTTAAG	2 cut(s)	287, 722
BstAUI	TGTACA	1 cut(s)	416
BstBAI	YACGTR	2 cut(s)	82, 620
BstBI	TTCGAA	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	1 cut(s)	478
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	411, 769
BstKTI	GATC	8 cut(s)	21, 93, 172, 244, 514, 571, 586, 685
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	351
BstSNI	TACGTA	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	18, 90
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	2 cut(s)	18, 90
BsuRI	GGCC	3 cut(s)	198, 559, 747
BtgI	CCRYGG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	20, 849
BveI	ACCTGC	1 cut(s)	617
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	411, 769
Cfr13I	GGNCC	4 cut(s)	10, 557, 642, 881
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	203, 417, 727, 896
CviJI	RGCY	8 cut(s)	61, 118, 198, 305, 559, 634, 747, 800
CviKI_1	RGCY	8 cut(s)	61, 118, 198, 305, 559, 634, 747, 800
CviQI	GTAC	4 cut(s)	203, 417, 727, 896
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	8 cut(s)	20, 92, 171, 243, 513, 570, 585, 684
DpnII	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
Eco105I	TACGTA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	3 cut(s)	10, 642, 881
Eco57I	CTGAAG	1 cut(s)	609
Eco72I	CACGTG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	478
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 705, 737
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
GlaI	GCGC	2 cut(s)	410, 768
GluI	GCNGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	3 cut(s)	198, 559, 747
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	2 cut(s)	411, 769
Hin6I	GCGC	2 cut(s)	409, 767
HinP1I	GCGC	2 cut(s)	409, 767
HinfI	GANTC	2 cut(s)	104, 648
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	124, 617
Hpy188I	TCNGA	3 cut(s)	438, 516, 658
Hpy8I	GTNNAC	2 cut(s)	124, 617
HpyAV	CCTTC	2 cut(s)	29, 710
HpyCH4III	ACNGT	5 cut(s)	128, 139, 466, 757, 779
HpyCH4IV	ACGT	2 cut(s)	81, 619
HpyCH4V	TGCA	2 cut(s)	115, 404
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	2 cut(s)	81, 619
HspAI	GCGC	2 cut(s)	409, 767
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	81, 619
MaeIII	GTNAC	5 cut(s)	133, 248, 649, 751, 779
MalI	GATC	8 cut(s)	20, 92, 171, 243, 513, 570, 585, 684
MboI	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
MboII	GAAGA	2 cut(s)	602, 838
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	2 cut(s)	18, 90
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	6 cut(s)	214, 450, 507, 535, 543, 772
MlyI	GAGTC	2 cut(s)	113, 657
MnlI	CCTC	7 cut(s)	46, 94, 188, 375, 547, 853, 872
Mph1103I	ATGCAT	1 cut(s)	406
MroXI	GAANNNNTTC	2 cut(s)	182, 845
MseI	TTAA	4 cut(s)	288, 723, 809, 816
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	786
MspCI	CTTAAG	2 cut(s)	287, 722
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
NlaIV	GGNNCC	2 cut(s)	558, 643
NmuCI	GTSAC	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	502
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	747
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	182, 845
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	2 cut(s)	112, 656
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	2 cut(s)	112, 656
Ppu21I	YACGTR	2 cut(s)	82, 620
PscI	ACATGT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	351
PspCI	CACGTG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	558, 643
PspPI	GGNCC	4 cut(s)	10, 557, 642, 881
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	18, 90
RsaI	GTAC	4 cut(s)	204, 418, 728, 897
RsaNI	GTAC	4 cut(s)	203, 417, 727, 896
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	288, 723, 809, 816
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	8 cut(s)	18, 90, 169, 241, 511, 568, 583, 682
Sau96I	GGNCC	4 cut(s)	10, 557, 642, 881
SchI	GAGTC	2 cut(s)	113, 657
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	3 cut(s)	10, 642, 881
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	287, 722
SmoI	CTYRAG	2 cut(s)	287, 722
SnaBI	TACGTA	1 cut(s)	82
Sse9I	AATT	6 cut(s)	214, 450, 507, 535, 543, 772
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	1 cut(s)	784
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	5 cut(s)	128, 139, 466, 757, 779
TaiI	ACGT	2 cut(s)	84, 622
TaqI	TCGA	2 cut(s)	502, 694
TasI	AATT	6 cut(s)	214, 450, 507, 535, 543, 772
TatI	WGTACW	2 cut(s)	416, 726
Tru1I	TTAA	4 cut(s)	288, 723, 809, 816
Tru9I	TTAA	4 cut(s)	288, 723, 809, 816
TscAI	CASTG	2 cut(s)	20, 856
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	5 cut(s)	143, 191, 214, 348, 387
TspRI	CASTG	2 cut(s)	20, 856
Vha464I	CTTAAG	2 cut(s)	287, 722
VpaK11BI	GGWCC	3 cut(s)	10, 642, 881
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	543
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmnI	GAANNNNTTC	2 cut(s)	182, 845
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.