MD16G1059400.v1.1

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013186
Physical Location & Seq
Forward (+)
4268092 .. 4270339
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1059400.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGCGCAGCAAGCAGTGCAGAAGAACACGATGTACGTCGGAGGACTGGCGGAGGAGGTGAACGAGTCGATACTCCACGCGGCGTTCATACCCTTTGGGGACATCAAGGACGTAAAGACGCCGCTGGATCAAGCCACCCAGAAGCACCGCTCTTTTGGGTTCGTCACGTTTTTGGAGAGGGAGGACGCCGCCGCTGCCATGGACAATATGGACGGCGCGGAGCTCTACGGCCGAGTCCTCACCGTCAATTACGCCCTACCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCCCAGCCCATTTGGGCAGATGCAGACACATGGTTTGAGAGACAGCAACAAGAAGAGGAAATGCAGCGCATTCAGGCGGAGAACAAGGCCGCCATGCAGGCTGCGGAAGAGTTGCACCGGAAAAAATTGACGCAAGAACGAGAAGGGGAAAAAGAAGAGGAGATCGAGATGAAGGATGACCCCATCGCGAGGGCTGAAGCAGAGGTTTTGAAACAGAATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006355 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006974 GO:0008143 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0016018 GO:0016070 GO:0016071 GO:0016192 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019222 GO:0019538 GO:0030141 GO:0031323 GO:0031326 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032940 GO:0032991 GO:0033218 GO:0033554 GO:0034641 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0045069 GO:0045070 GO:0045321 GO:0046483 GO:0046903 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051716 GO:0060205 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071007 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097708 GO:0099503 GO:0101002 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1903900 GO:1903902 GO:1904813 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

173

Amino Acids

19.53

Weight (kDa)

4.72

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 12 - 80 6.2e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13690
fragaria_vesca FvH4_4g29710
malus_domestica MD13G1060000.v1.1 MD16G1059400.v1.1
prunus_persica Prupe.1G289400_v2.0.a1
pyrus_communis pycom13g05340
rosa_chinensis RchiOBHm_Chr4g0437961
rosa_laevigata RLG00000006398
rosa_multiflora Rmu_sc0004976.1_g000026 Rmu_sc0007538.1_g000009
rosa_roxburghii Rroxscaffold_5G00379120
rosa_rugosa Rorug04G0305900
rosa_samantha Rh4AG357500 Rh4BG368400 Rh4CG382500 Rh4DG363300
rosa_wichuraiana Rw0G011520 Rw0G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AccII CGCG 3 cut(s) 80, 218, 482
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 2 cut(s) 119, 186
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 483
AgsI TTSAA 1 cut(s) 505
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 1 cut(s) 135
AoxI GGCC 3 cut(s) 229, 291, 381
ApeKI GCWGC 4 cut(s) 7, 194, 358, 395
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 3 cut(s) 7, 218, 363
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 70, 232, 290
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 4 cut(s) 19, 181, 370, 382
BccI CCATC 1 cut(s) 485
BceAI ACGGC 2 cut(s) 229, 244
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 304
BsaHI GRCGYC 2 cut(s) 119, 186
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 68, 467
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 4 cut(s) 19, 181, 370, 382
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 3 cut(s) 80, 218, 482
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 231, 293, 383
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 3 cut(s) 231, 293, 383
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 127, 456
Bsp19I CCATGG 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 482
BspANI GGCC 3 cut(s) 231, 293, 383
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 3 cut(s) 80, 218, 482
BspPI GGATC 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 127, 456
BssNI GRCGYC 2 cut(s) 119, 186
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 3 cut(s) 342, 396, 444
BstACI GRCGYC 2 cut(s) 119, 186
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 12, 393
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 3 cut(s) 80, 218, 482
BstHHI GCGC 3 cut(s) 7, 218, 363
BstKTI GATC 2 cut(s) 130, 459
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 2 cut(s) 127, 456
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 4 cut(s) 11, 16, 194, 392
BstUI CGCG 3 cut(s) 80, 218, 482
BstV1I GCAGC 4 cut(s) 19, 181, 370, 382
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 231, 293, 383
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
BtuMI TCGCGA 1 cut(s) 482
Cac8I GCNNGC 2 cut(s) 12, 393
CfoI GCGC 3 cut(s) 7, 218, 363
Cfr13I GGNCC 1 cut(s) 291
CseI GACGC 3 cut(s) 127, 194, 433
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 199, 324, 388
CviJI RGCY 8 cut(s) 134, 223, 231, 293, 301, 383, 395, 488
CviKI_1 RGCY 8 cut(s) 134, 223, 231, 293, 301, 383, 395, 488
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 261
DpnI GATC 2 cut(s) 129, 458
DpnII GATC 2 cut(s) 127, 456
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 3 cut(s) 342, 396, 444
EarI CTCTTC 3 cut(s) 342, 396, 444
EciI GGCGGA 2 cut(s) 65, 386
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 202, 327, 391
FaiI YATR 5 cut(s) 89, 200, 209, 325, 389
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 198, 323, 387
FokI GGATG 1 cut(s) 482
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 1 cut(s) 517
GlaI GCGC 3 cut(s) 6, 217, 362
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 3 cut(s) 231, 293, 383
HapII CCGG 1 cut(s) 412
HgaI GACGC 3 cut(s) 127, 194, 433
HhaI GCGC 3 cut(s) 7, 218, 363
Hin1I GRCGYC 2 cut(s) 119, 186
Hin1II CATG 3 cut(s) 202, 327, 391
Hin6I GCGC 3 cut(s) 5, 216, 361
HinP1I GCGC 3 cut(s) 5, 216, 361
HinfI GANTC 3 cut(s) 65, 234, 511
HpaII CCGG 1 cut(s) 412
HphI GGTGA 3 cut(s) 70, 232, 290
Hpy166II GTNNAC 2 cut(s) 61, 281
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 2 cut(s) 460, 481
Hpy8I GTNNAC 2 cut(s) 61, 281
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 431, 460
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 3 cut(s) 36, 111, 167
HpyCH4V TGCA 5 cut(s) 19, 317, 358, 391, 409
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 16, 194, 392
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 3 cut(s) 36, 111, 167
Hsp92I GRCGYC 2 cut(s) 119, 186
Hsp92II CATG 3 cut(s) 202, 327, 391
HspAI GCGC 3 cut(s) 5, 216, 361
Kzo9I GATC 2 cut(s) 127, 456
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 9 cut(s) 32, 110, 152, 269, 273, 311, 353, 377, 425
Lsp1109I GCAGC 4 cut(s) 19, 181, 370, 382
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 517
MaeII ACGT 3 cut(s) 36, 111, 167
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 129, 458
MbiI CCGCTC 1 cut(s) 150
MboI GATC 2 cut(s) 127, 456
MboII GAAGA 4 cut(s) 34, 359, 413, 461
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 2 cut(s) 247, 419
MlyI GAGTC 2 cut(s) 74, 243
MmeI TCCRAC 1 cut(s) 19
MspA1I CMGCKG 2 cut(s) 124, 194
MspI CCGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 363
MvnI CGCG 3 cut(s) 80, 218, 482
MwoI GCNNNNNNNGC 4 cut(s) 11, 16, 194, 392
NcoI CCATGG 1 cut(s) 198
NdeII GATC 2 cut(s) 127, 456
NlaIII CATG 3 cut(s) 202, 327, 391
NmeAIII GCCGAG 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 482
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 511
PleI GAGTC 2 cut(s) 73, 242
PpsI GAGTC 2 cut(s) 73, 242
Psp124BI GAGCTC 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 291
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
RruI TCGCGA 1 cut(s) 482
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 127, 456
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 2 cut(s) 74, 243
SduI GDGCHC 1 cut(s) 225
SetI ASST 7 cut(s) 39, 60, 114, 170, 225, 262, 501
SfaNI GCATC 1 cut(s) 304
Sse9I AATT 2 cut(s) 247, 419
SspMI CTAG 1 cut(s) 517
SstI GAGCTC 1 cut(s) 225
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 3 cut(s) 39, 114, 170
TaqI TCGA 2 cut(s) 68, 459
TasI AATT 2 cut(s) 247, 419
TauI GCSGC 6 cut(s) 83, 124, 191, 194, 296, 386
TfiI GAWTC 1 cut(s) 511
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 4 cut(s) 7, 194, 358, 395
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 76, 479
TspRI CASTG 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.