Rorug04G0305900

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013186
Physical Location & Seq
Reverse (-)
48203979 .. 48205035
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0305900.1

Sequence Viewer

Length: 627 bp
ATGGGATTACAAGCTGCTGCACATTCATCATCTTCTTCCATAGACAGCAGCAACCATCCTGACCTTGATGATCTTCTTCCTAAGCCTTCTGGATCGTCTTCTTCTTCGTCTCTCTCTCACAAAATCAATGGTGGTACTAATTCTCGTAACAGTCGCAGAAGCACTCATACCAGAACAGATTTGAGCACTGATCTCAGACTTGGCCTGAGCATATCACCGTCTCATCACTCTGACTTGTCTTCCACTACTTCAAGCCCAAGGGAAGAAGCATTGGTAAGCTGGCCGCCGATCAAATCGATCTTGAGGAGCACACTTTCAGGCAAATCAGAGAATTACCATCATCAGAATTCTTCTTTATTTGTGAAGGTCTACATGGAGGGAATCCCAATTGGTAGAAAATTGAATCTGTTTGCTCACGATGGTTATGATGCTTTGATCACAACTCTGAGCCTCATGTTCAAGACCACCATTCTATGTCCTGATAATAATCATGTTCATTCAGAGAAATATTATGTTTTAACTTATGAAGATCAAGAAGGGGATTGGATGCTGGTTGGAGATGTGCCTTGGGCGATATTCTTGACTACTGTGAAAAGACTGAAGATTACTAGAGCAGACAGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006355 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006974 GO:0008143 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0016018 GO:0016070 GO:0016071 GO:0016192 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019222 GO:0019538 GO:0030141 GO:0031323 GO:0031326 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032940 GO:0032991 GO:0033218 GO:0033554 GO:0034641 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0045069 GO:0045070 GO:0045321 GO:0046483 GO:0046903 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051716 GO:0060205 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071007 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097708 GO:0099503 GO:0101002 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1903900 GO:1903902 GO:1904813 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

208

Amino Acids

22.98

Weight (kDa)

7.19

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 77 - 204 9.4e-34 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13690
fragaria_vesca FvH4_4g29710
malus_domestica MD13G1060000.v1.1 MD16G1059400.v1.1
prunus_persica Prupe.1G289400_v2.0.a1
pyrus_communis pycom13g05340
rosa_chinensis RchiOBHm_Chr4g0437961
rosa_laevigata RLG00000006398
rosa_multiflora Rmu_sc0004976.1_g000026 Rmu_sc0007538.1_g000009
rosa_roxburghii Rroxscaffold_5G00379120
rosa_rugosa Rorug04G0305900
rosa_samantha Rh4AG357500 Rh4BG368400 Rh4CG382500 Rh4DG363300
rosa_wichuraiana Rw0G011520 Rw0G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 3 cut(s) 252, 403, 460
AluBI AGCT 2 cut(s) 14, 279
AluI AGCT 2 cut(s) 14, 279
Alw21I GWGCWC 2 cut(s) 188, 311
Alw26I GTCTC 2 cut(s) 114, 225
AlwI GGATC 1 cut(s) 100
AoxI GGCC 2 cut(s) 202, 281
ApeKI GCWGC 3 cut(s) 14, 17, 48
ApoI RAATTY 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BbsI GAAGAC 2 cut(s) 90, 231
Bbv12I GWGCWC 2 cut(s) 188, 311
BbvI GCAGC 2 cut(s) 4, 60
BccI CCATC 3 cut(s) 63, 345, 413
BclI TGATCA 1 cut(s) 435
BcoDI GTCTC 2 cut(s) 114, 225
BfaI CTAG 1 cut(s) 609
BisI GCNGC 4 cut(s) 15, 18, 49, 284
BlsI GCNGC 4 cut(s) 16, 19, 50, 285
BmsI GCATC 2 cut(s) 418, 537
BpiI GAAGAC 2 cut(s) 90, 231
Bpu10I CCTNAGC 2 cut(s) 81, 206
BpuEI CTTGAG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 257, 566
Bse8I GATNNNNATC 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 257, 566
BseGI GGATG 2 cut(s) 55, 552
BseJI GATNNNNATC 1 cut(s) 486
BseMII CTCAG 3 cut(s) 197, 208, 437
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 4, 60
BshFI GGCC 2 cut(s) 204, 283
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 188, 311
BsmAI GTCTC 2 cut(s) 114, 225
BsmBI CGTCTC 2 cut(s) 114, 225
BsnI GGCC 2 cut(s) 204, 283
Bsp1286I GDGCHC 2 cut(s) 188, 311
Bsp143I GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 204, 283
BspCNI CTCAG 3 cut(s) 198, 207, 438
BspDI ATCGAT 1 cut(s) 296
BspPI GGATC 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 257, 566
BssMI GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
BssT1I CCWWGG 2 cut(s) 257, 566
Bst4CI ACNGT 3 cut(s) 152, 219, 589
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 4 cut(s) 81, 194, 206, 446
BstF5I GGATG 2 cut(s) 55, 552
BstKTI GATC 7 cut(s) 73, 95, 193, 291, 300, 438, 532
BstMAI GTCTC 2 cut(s) 114, 225
BstMBI GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
BstV1I GCAGC 2 cut(s) 4, 60
BstV2I GAAGAC 2 cut(s) 90, 231
Bsu15I ATCGAT 1 cut(s) 296
BsuRI GGCC 2 cut(s) 204, 283
BsuTUI ATCGAT 1 cut(s) 296
BtsCI GGATG 2 cut(s) 55, 552
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 281
ClaI ATCGAT 1 cut(s) 296
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 373, 454, 491
CviJI RGCY 7 cut(s) 14, 85, 204, 255, 279, 283, 450
CviKI_1 RGCY 7 cut(s) 14, 85, 204, 255, 279, 283, 450
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 4 cut(s) 81, 194, 206, 446
DpnI GATC 7 cut(s) 72, 94, 192, 290, 299, 437, 531
DpnII GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
EaeI YGGCCR 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 257, 566
Eco57I CTGAAG 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 257, 566
ErhI CCWWGG 2 cut(s) 257, 566
Esp3I CGTCTC 2 cut(s) 114, 225
FaeI CATG 3 cut(s) 376, 457, 494
FatI CATG 3 cut(s) 372, 453, 490
FbaI TGATCA 1 cut(s) 435
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 15, 18, 49, 284
FokI GGATG 2 cut(s) 42, 559
Fsp4HI GCNGC 4 cut(s) 15, 18, 49, 284
FspBI CTAG 1 cut(s) 609
GluI GCNGC 4 cut(s) 15, 18, 49, 284
HaeIII GGCC 2 cut(s) 204, 283
Hin1II CATG 3 cut(s) 376, 457, 494
HinfI GANTC 2 cut(s) 381, 403
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 6 cut(s) 197, 232, 328, 345, 447, 502
Hpy188III TCNNGA 8 cut(s) 59, 90, 301, 416, 460, 479, 533, 580
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 96, 358, 530
HpyCH4III ACNGT 3 cut(s) 152, 219, 589
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 4 cut(s) 81, 194, 206, 446
Hsp92II CATG 3 cut(s) 376, 457, 494
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 8 cut(s) 72, 75, 184, 218, 265, 303, 492, 536
Lsp1109I GCAGC 2 cut(s) 4, 60
LweI GCATC 2 cut(s) 418, 537
MaeI CTAG 1 cut(s) 609
MaeIII GTNAC 1 cut(s) 146
MalI GATC 7 cut(s) 72, 94, 192, 290, 299, 437, 531
MboI GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 188, 311
MluCI AATT 5 cut(s) 139, 331, 346, 387, 398
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 3 cut(s) 297, 370, 461
MseI TTAA 1 cut(s) 518
MunI CAATTG 1 cut(s) 387
NdeII GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
NlaIII CATG 3 cut(s) 376, 457, 494
PfeI GAWTC 2 cut(s) 381, 403
PkrI GCNGC 4 cut(s) 16, 19, 50, 285
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 4 cut(s) 15, 18, 49, 284
Sau3AI GATC 7 cut(s) 70, 92, 190, 288, 297, 435, 529
SduI GDGCHC 2 cut(s) 188, 311
SetI ASST 4 cut(s) 16, 66, 281, 369
SfaNI GCATC 2 cut(s) 418, 537
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 5 cut(s) 139, 331, 346, 387, 398
SsiI CCGC 1 cut(s) 284
SspI AATATT 1 cut(s) 509
SspMI CTAG 1 cut(s) 609
StyI CCWWGG 2 cut(s) 257, 566
TaaI ACNGT 3 cut(s) 152, 219, 589
TaqI TCGA 1 cut(s) 296
TasI AATT 5 cut(s) 139, 331, 346, 387, 398
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 2 cut(s) 381, 403
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 193
TseI GCWGC 3 cut(s) 14, 17, 48
TspDTI ATGAA 3 cut(s) 15, 485, 540
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.