Prupe.1G289400_v2.0.a1

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013186
Physical Location & Seq
Reverse (-)
28852187 .. 28853711
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G289400.1

Sequence Viewer

Length: 519 bp
ATGGCGCAGCAAGCAGTGCAGAAGAATACGCTGTATGTAGGAGGGTTGGCGGAGGAGGTGAACGAGTCGATTCTGCACGCGGCGTTCATACCCTTTGGGGACATCAAGGACGTGAAGACGCCGCTGGACCAAGCCACACAGAAGCACCGGTCTTTTGGCTTCGTCACATTCTTGGAGAGAGAGGATGCATCCTCCGCCATGGACAATATGGACGGCGCCGAGCTCTACGGCCGTGTCCTCACCGTCAATTATGCCCTCCCAGAGAAAATCAAGGGTGGTGAACAGGGTTGGGCCGCTCAGCCCATCTGGGCAGATGCAGACACATGGTTTGAGAGGCAGCAACAAGAAGAGGAAATGCAGCGTATGCAGGCCGAGAACCGGGCTGCCATGCAGGCTGCGGAAGAGTTACACAGGAAAAAGAAGACAGAGGATCGAGAGGGGGAAAAAGAAGAGGAAATCGAGATGAAGGATGACCCCATGGCAAGGGCTGAAGCAGAGGTTTTGAAACAGAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006355 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006974 GO:0008143 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0016018 GO:0016070 GO:0016071 GO:0016192 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019222 GO:0019538 GO:0030141 GO:0031323 GO:0031326 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032940 GO:0032991 GO:0033218 GO:0033554 GO:0034641 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0045069 GO:0045070 GO:0045321 GO:0046483 GO:0046903 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051716 GO:0060205 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071007 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097708 GO:0099503 GO:0101002 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1903900 GO:1903902 GO:1904813 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

4.65

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13690
fragaria_vesca FvH4_4g29710
malus_domestica MD13G1060000.v1.1 MD16G1059400.v1.1
prunus_persica Prupe.1G289400_v2.0.a1
pyrus_communis pycom13g05340
rosa_chinensis RchiOBHm_Chr4g0437961
rosa_laevigata RLG00000006398
rosa_multiflora Rmu_sc0004976.1_g000026 Rmu_sc0007538.1_g000009
rosa_roxburghii Rroxscaffold_5G00379120
rosa_rugosa Rorug04G0305900
rosa_samantha Rh4AG357500 Rh4BG368400 Rh4CG382500 Rh4DG363300
rosa_wichuraiana Rw0G011520 Rw0G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 1 cut(s) 80
AciI CCGC 6 cut(s) 50, 80, 122, 195, 294, 398
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 2 cut(s) 119, 216
AfiI CCNNNNNNNGG 2 cut(s) 378, 483
AgeI ACCGGT 1 cut(s) 147
AgsI TTSAA 1 cut(s) 505
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 438
AoxI GGCC 3 cut(s) 229, 291, 369
ApeKI GCWGC 5 cut(s) 7, 337, 358, 383, 395
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AsiGI ACCGGT 1 cut(s) 147
AspLEI GCGC 2 cut(s) 7, 218
AspS9I GGNCC 2 cut(s) 127, 291
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 70, 232, 290
AvaII GGWCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 122, 428
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 5 cut(s) 19, 349, 370, 370, 382
BccI CCATC 1 cut(s) 311
BceAI ACGGC 3 cut(s) 216, 229, 244
BcnI CCSGG 1 cut(s) 380
BfaI CTAG 1 cut(s) 517
BfoI RGCGCY 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 8 cut(s) 8, 81, 122, 294, 338, 359, 384, 396
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 8 cut(s) 9, 82, 123, 295, 339, 360, 385, 397
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 127, 291
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 3 cut(s) 175, 197, 304
BpiI GAAGAC 2 cut(s) 122, 428
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 119, 216
BsaJI CCNNGG 2 cut(s) 198, 477
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 483
Bse118I RCCGGY 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 198, 477
BseGI GGATG 3 cut(s) 188, 190, 475
BseLI CCNNNNNNNGG 2 cut(s) 378, 483
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 5 cut(s) 19, 349, 370, 370, 382
BsgI GTGCAG 2 cut(s) 38, 59
Bsh1236I CGCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 231, 293, 371
BshNI GGYRCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 148, 379
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 378, 483
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 231, 293, 371
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 430
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 2 cut(s) 198, 477
BspACI CCGC 6 cut(s) 50, 80, 122, 195, 294, 398
BspANI GGCC 3 cut(s) 231, 293, 371
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 198, 477
BssMI GATC 1 cut(s) 430
BssNI GRCGYC 2 cut(s) 119, 216
BssT1I CCWWGG 2 cut(s) 198, 477
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 3 cut(s) 342, 396, 444
BstACI GRCGYC 2 cut(s) 119, 216
BstAPI GCANNNNNTGC 2 cut(s) 16, 364
BstC8I GCNNGC 4 cut(s) 12, 78, 369, 393
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 198, 477
BstF5I GGATG 3 cut(s) 188, 190, 475
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 2 cut(s) 7, 218
BstKTI GATC 1 cut(s) 433
BstMBI GATC 1 cut(s) 430
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 5 cut(s) 11, 16, 194, 364, 392
BstSCI CCNGG 1 cut(s) 378
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 5 cut(s) 19, 349, 370, 370, 382
BstV2I GAAGAC 2 cut(s) 122, 428
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 231, 293, 371
BtgI CCRYGG 2 cut(s) 198, 477
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 3 cut(s) 188, 190, 475
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 12, 78, 369, 393
CfoI GCGC 2 cut(s) 7, 218
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 127, 291
CseI GACGC 1 cut(s) 127
CspAI ACCGGT 1 cut(s) 147
CviAII CATG 4 cut(s) 199, 324, 388, 478
DdeI CTNAG 1 cut(s) 297
DinI GGCGCC 1 cut(s) 217
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 3 cut(s) 342, 396, 444
EarI CTCTTC 3 cut(s) 342, 396, 444
EciI GGCGGA 2 cut(s) 65, 184
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 198, 477
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 198, 477
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 198, 477
FaeI CATG 4 cut(s) 202, 327, 391, 481
FaiI YATR 9 cut(s) 36, 89, 200, 209, 252, 325, 365, 389, 479
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 198, 323, 387, 477
Fnu4HI GCNGC 8 cut(s) 8, 81, 122, 294, 338, 359, 384, 396
FokI GGATG 3 cut(s) 175, 197, 482
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 8 cut(s) 8, 81, 122, 294, 338, 359, 384, 396
FspBI CTAG 1 cut(s) 517
GlaI GCGC 2 cut(s) 6, 217
GluI GCNGC 8 cut(s) 8, 81, 122, 294, 338, 359, 384, 396
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 3 cut(s) 231, 293, 371
HapII CCGG 2 cut(s) 148, 379
HgaI GACGC 1 cut(s) 127
HhaI GCGC 2 cut(s) 7, 218
Hin1I GRCGYC 2 cut(s) 119, 216
Hin1II CATG 4 cut(s) 202, 327, 391, 481
Hin6I GCGC 2 cut(s) 5, 216
HinP1I GCGC 2 cut(s) 5, 216
HinfI GANTC 2 cut(s) 65, 70
HpaII CCGG 2 cut(s) 148, 379
HphI GGTGA 3 cut(s) 70, 232, 290
Hpy166II GTNNAC 2 cut(s) 61, 281
Hpy188III TCNNGA 2 cut(s) 434, 460
Hpy8I GTNNAC 2 cut(s) 61, 281
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 7 cut(s) 19, 76, 188, 317, 358, 367, 391
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 16, 194, 364, 392
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 119, 216
Hsp92II CATG 4 cut(s) 202, 327, 391, 481
HspAI GCGC 2 cut(s) 5, 216
KasI GGCGCC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 430
LpnPI CCDG 9 cut(s) 110, 161, 269, 273, 292, 353, 377, 392, 397
Lsp1109I GCAGC 5 cut(s) 19, 349, 370, 370, 382
LweI GCATC 3 cut(s) 175, 197, 304
MaeI CTAG 1 cut(s) 517
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 163, 405
MalI GATC 1 cut(s) 432
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 430
MboII GAAGA 6 cut(s) 34, 127, 359, 413, 433, 461
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 247
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 2 cut(s) 148, 379
MspR9I CCNGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 5 cut(s) 11, 16, 194, 364, 392
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 2 cut(s) 198, 477
NdeII GATC 1 cut(s) 430
NlaIII CATG 4 cut(s) 202, 327, 391, 481
NlaIV GGNNCC 1 cut(s) 217
NmeAIII GCCGAG 2 cut(s) 244, 397
NmuCI GTSAC 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 190
PfeI GAWTC 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 147
PkrI GCNGC 8 cut(s) 9, 82, 123, 295, 339, 360, 385, 397
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 127, 291
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 8 cut(s) 8, 81, 122, 294, 338, 359, 384, 396
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 2 cut(s) 127, 291
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 225
SetI ASST 4 cut(s) 60, 114, 225, 501
SfaNI GCATC 3 cut(s) 175, 197, 304
SfoI GGCGCC 1 cut(s) 217
SinI GGWCC 1 cut(s) 127
Sse9I AATT 1 cut(s) 247
SsiI CCGC 6 cut(s) 50, 80, 122, 195, 294, 398
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 1 cut(s) 517
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 2 cut(s) 198, 477
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 68, 433, 459
TasI AATT 1 cut(s) 247
TauI GCSGC 3 cut(s) 83, 124, 296
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 5 cut(s) 7, 337, 358, 383, 395
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 76, 479
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.