RLG00000006398

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013186
Physical Location & Seq
Reverse (-)
6751596 .. 6752535
940 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006398

Sequence Viewer

Length: 516 bp
ATGGCGCAGCAAGTGCAGAAGAACACTTTATACGTGGGAGGGTTGGCGGAGGAGGTGAACGAGACGATTCTCCACTCGGCTTTCATACCGTTCGGCGACATCAAAGACGTGAAGACGCCGCTCGATCAAGCCACCCAGAAGCACCGCTCCTTCGGCTTCGTCACTTTCTTGGAGAGAGAGGACGCCGCCGCCGCCATGGACAACATGGACGGCGCCGAGCTCTTCGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAGAAGATCAAGGGCGGTGAACAGGGTTGGGCCGCTCAGCCCATTTGGGCAGATGCAGACACATGGTTTGAGCGACAGCAACAAGAAGAGGAAATGCTGCGCATGCAAAAGGAGAACAAGGCTGCCATGGAGGCTGCGGAAGAGTTGCATAGGAAGAAAATGACGCAAGAGCGAGATGGAGAAAAAGAAGAGGAAAGCGAGATCAAGAATGACCCCATGGCAATGGCGGAAGCAGAGGTTCTGAAGCAAGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006355 GO:0006396 GO:0006397 GO:0006464 GO:0006725 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006974 GO:0008143 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0016018 GO:0016070 GO:0016071 GO:0016192 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019222 GO:0019538 GO:0030141 GO:0031323 GO:0031326 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032940 GO:0032991 GO:0033218 GO:0033554 GO:0034641 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0045069 GO:0045070 GO:0045321 GO:0046483 GO:0046903 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051716 GO:0060205 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071007 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097708 GO:0099503 GO:0101002 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1903900 GO:1903902 GO:1904813 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

172

Amino Acids

19.46

Weight (kDa)

4.61

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 79 6.3e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13690
fragaria_vesca FvH4_4g29710
malus_domestica MD13G1060000.v1.1 MD16G1059400.v1.1
prunus_persica Prupe.1G289400_v2.0.a1
pyrus_communis pycom13g05340
rosa_chinensis RchiOBHm_Chr4g0437961
rosa_laevigata RLG00000006398
rosa_multiflora Rmu_sc0004976.1_g000026 Rmu_sc0007538.1_g000009
rosa_roxburghii Rroxscaffold_5G00379120
rosa_rugosa Rorug04G0305900
rosa_samantha Rh4AG357500 Rh4BG368400 Rh4CG382500 Rh4DG363300
rosa_wichuraiana Rw0G011520 Rw0G016150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 212
AccBSI CCGCTC 3 cut(s) 121, 147, 293
AccII CGCG 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 226
AcyI GRCGYC 3 cut(s) 116, 183, 213
AjiI CACGTC 1 cut(s) 109
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 2 cut(s) 226, 288
ApeKI GCWGC 4 cut(s) 7, 355, 380, 392
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 3 cut(s) 7, 215, 360
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 67, 229, 287
AvaI CYCGRG 1 cut(s) 257
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 19, 342, 367, 379
BccI CCATC 1 cut(s) 428
BceAI ACGGC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 514
BfoI RGCGCY 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 389
BlpI GCTNAGC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 34
BsaHI GRCGYC 3 cut(s) 116, 183, 213
BsaJI CCNNGG 3 cut(s) 195, 384, 474
Bse3DI GCAATG 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 195, 384, 474
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 226
BseXI GCAGC 4 cut(s) 19, 342, 367, 379
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 228, 290
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 228, 290
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 124, 264, 459
Bsp1720I GCTNAGC 1 cut(s) 294
Bsp19I CCATGG 3 cut(s) 195, 384, 474
BspANI GGCC 2 cut(s) 228, 290
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 212
BsrBI CCGCTC 3 cut(s) 121, 147, 293
BsrDI GCAATG 1 cut(s) 486
BssECI CCNNGG 3 cut(s) 195, 384, 474
BssMI GATC 3 cut(s) 124, 264, 459
BssNI GRCGYC 3 cut(s) 116, 183, 213
BssT1I CCWWGG 3 cut(s) 195, 384, 474
Bst4CI ACNGT 2 cut(s) 90, 241
Bst6I CTCTTC 4 cut(s) 227, 339, 393, 441
BstACI GRCGYC 3 cut(s) 116, 183, 213
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 3 cut(s) 195, 384, 474
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 3 cut(s) 7, 215, 360
BstKTI GATC 3 cut(s) 127, 267, 462
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 124, 264, 459
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 5 cut(s) 13, 153, 191, 361, 389
BstNSI RCATGY 1 cut(s) 364
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 19, 342, 367, 379
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 481
BstZI CGGCCG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 228, 290
BtgI CCRYGG 3 cut(s) 195, 384, 474
BtrI CACGTC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 362
CfoI GCGC 3 cut(s) 7, 215, 360
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 4 cut(s) 124, 191, 220, 430
CviAII CATG 6 cut(s) 196, 205, 321, 361, 385, 475
CviJI RGCY 9 cut(s) 80, 131, 156, 220, 228, 290, 298, 380, 392
CviKI_1 RGCY 9 cut(s) 80, 131, 156, 220, 228, 290, 298, 380, 392
DdeI CTNAG 1 cut(s) 294
DinI GGCGCC 1 cut(s) 214
DpnI GATC 3 cut(s) 126, 266, 461
DpnII GATC 3 cut(s) 124, 264, 459
EaeI YGGCCR 1 cut(s) 226
EagI CGGCCG 1 cut(s) 226
Eam1104I CTCTTC 4 cut(s) 227, 339, 393, 441
EarI CTCTTC 4 cut(s) 227, 339, 393, 441
EciI GGCGGA 2 cut(s) 62, 500
Ecl136II GAGCTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 195, 384, 474
Eco24I GRGCYC 1 cut(s) 222
Eco52I CGGCCG 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 220
EcoT14I CCWWGG 3 cut(s) 195, 384, 474
EcoT38I GRGCYC 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
ErhI CCWWGG 3 cut(s) 195, 384, 474
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 6 cut(s) 199, 208, 324, 364, 388, 478
FaiI YATR 9 cut(s) 31, 86, 197, 206, 322, 362, 386, 408, 476
FatI CATG 6 cut(s) 195, 204, 320, 360, 384, 474
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 514
FspI TGCGCA 1 cut(s) 359
GlaI GCGC 3 cut(s) 6, 214, 359
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 228, 290
HgaI GACGC 4 cut(s) 124, 191, 220, 430
HhaI GCGC 3 cut(s) 7, 215, 360
Hin1I GRCGYC 3 cut(s) 116, 183, 213
Hin1II CATG 6 cut(s) 199, 208, 324, 364, 388, 478
Hin6I GCGC 3 cut(s) 5, 213, 358
HinP1I GCGC 3 cut(s) 5, 213, 358
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 67
HphI GGTGA 3 cut(s) 67, 229, 287
Hpy166II GTNNAC 3 cut(s) 58, 244, 278
Hpy188I TCNGA 1 cut(s) 501
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 3 cut(s) 58, 244, 278
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 90, 241
HpyCH4IV ACGT 2 cut(s) 33, 108
HpyCH4V TGCA 4 cut(s) 16, 314, 364, 406
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 153, 191, 361, 389
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 2 cut(s) 33, 108
Hsp92I GRCGYC 3 cut(s) 116, 183, 213
Hsp92II CATG 6 cut(s) 199, 208, 324, 364, 388, 478
HspAI GCGC 3 cut(s) 5, 213, 358
KasI GGCGCC 1 cut(s) 212
Kzo9I GATC 3 cut(s) 124, 264, 459
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 2 cut(s) 149, 266
Lsp1109I GCAGC 4 cut(s) 19, 342, 367, 379
LweI GCATC 1 cut(s) 301
MaeI CTAG 1 cut(s) 514
MaeII ACGT 2 cut(s) 33, 108
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 126, 266, 461
MbiI CCGCTC 3 cut(s) 121, 147, 293
MboI GATC 3 cut(s) 124, 264, 459
MboII GAAGA 8 cut(s) 31, 124, 214, 274, 356, 410, 424, 458
MhlI GDGCHC 1 cut(s) 222
Mly113I GGCGCC 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 479
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 5 cut(s) 13, 153, 191, 361, 389
NarI GGCGCC 1 cut(s) 213
NcoI CCATGG 3 cut(s) 195, 384, 474
NdeII GATC 3 cut(s) 124, 264, 459
NlaIII CATG 6 cut(s) 199, 208, 324, 364, 388, 478
NlaIV GGNNCC 1 cut(s) 214
NmeAIII GCCGAG 2 cut(s) 56, 241
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 359
NspI RCATGY 1 cut(s) 364
PaeI GCATGC 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 288
PsrI GAACNNNNNNTAC 2 cut(s) 14, 46
RseI CAYNNNNRTG 1 cut(s) 479
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 124, 264, 459
Sau96I GGNCC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 36, 57, 111, 222, 498
SfaNI GCATC 1 cut(s) 301
SfoI GGCGCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 479
SphI GCATGC 1 cut(s) 364
SspDI GGCGCC 1 cut(s) 212
SspMI CTAG 1 cut(s) 514
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 3 cut(s) 195, 384, 474
TaaI ACNGT 2 cut(s) 90, 241
TaiI ACGT 2 cut(s) 36, 111
TaqI TCGA 1 cut(s) 123
TauI GCSGC 6 cut(s) 121, 188, 191, 194, 231, 293
TfiI GAWTC 1 cut(s) 67
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 4 cut(s) 7, 355, 380, 392
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 73
XceI RCATGY 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XspI CTAG 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.