MD16G1138300.v1.1

Catalyzes the formation of S-adenosylmethionine from methionine and ATP

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
10606366 .. 10608923
2558 bp
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UTR
Exon/CDS
Intron
MD16G1138300.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGGAGACCTTCTTGTTCACATCCGAGTCAGTCAATGAGGGTCACCCAGACAAGCTCTGTGACCAGATCTCCGACGCGGTGCTCGATGCCTGCCTTGCACAAGACCCTGACAGCAAGGTCGCCTGCGAGACCTGTACCAAGACCAACATGGTCATGGTTTTCGGAGAAATCACCACCAAGGCCAATGTGGACTACGAGAAGATCGTTCGTGACACATGCCGCACAATTGGTTTCGTATCAGACGATGTGGGTCTTGATGCAGACAACTGCAAGGTTCTTGTGAACATTGAGCAGCAGAGCCCTGACATTGCTCAAGGTGTCCATGGTCATTTCTCCAAGAAGCCTGAGGAAATTGGTGCTGGTGACCAAGGCCACATGTTTGGTTATGCCACTGATGAGACCCCCGAGCTCATGCCACTCACGCACGTCCTTGCAACCAAGCTCGGTGCCAAGCTCACTGAGGTTCGCAAGAACGGGACTTGTGCTTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTATTGAGTATGTCAATGACAAGGGTGCCATGGTCCCAATTCGTGTCCACACTGTCCTGATTTCAACCCAGCACGATGAGACCGTGACAAACGATGAGATTGCCGCTGATCTCAAGGAGCATGTGATCAAGCCTGTGATCCCCGAGAAGTACCTTGATGAGAAGACCATCTTCCATCTCAACCCATCTGGCAGATTCGTGATTGGAGGCCCTCATGGTGACGCAGGTCTCACCGGCCGCAAGATCATCATCGACACCTATGGAGGATGGGGTGCTCACGGAGGTGGTGCCTTTTCTGGCAAGGACCCAACCAAGGTGGACAGGAGTGGTGCCTACATCGTGAGGCAGGCCGCAAAGAGCATAGTGGCCAGTGGACTTGCAAGGAGGTGCATTGTCCAGGTGTCCTATGCCATCGGTGTGCCCGAGCCTCTGTCGGTGTTCGTCGACTCTTATGGCACCGGGAAGATCCCCGACAAGGAGATCCTGAAGATTGTGAAGGAGAGCTTCGATTTCAGGCCAGGCATGATCTCCATCAACCTGGATCTCAAGAGGGGCGGCAATGATAGGTTTTTGAAGACCGCCGCCTACGGACATTTCGGCAGGGATGACCCTGACTTCACCTGGGAGGTTGTGAAGCCACTCAAGTGGGAGAAACCCCAAGCTTGA

Protein Analysis

394

Amino Acids

42.96

Weight (kDa)

5.59

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S-AdoMet_synt_N PF00438 4 - 101 2.8e-43 S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M PF02772 117 - 238 1.9e-47 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C PF02773 240 - 381 1.2e-60 S-adenosylmethionine synthetase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 731
AccB1I GGYRCC 5 cut(s) 446, 542, 803, 845, 971
AccI GTMKAC 1 cut(s) 960
AccII CGCG 1 cut(s) 77
AciI CCGC 8 cut(s) 77, 220, 621, 754, 867, 1071, 1095, 1098
AclWI GGATC 4 cut(s) 649, 976, 991, 1065
AcoI YGGCCR 2 cut(s) 751, 882
AcuI CTGAAG 1 cut(s) 1022
AfaI GTAC 2 cut(s) 136, 668
AfiI CCNNNNNNNGG 2 cut(s) 829, 991
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 2 cut(s) 582, 1090
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 4 cut(s) 912, 1033, 1053, 1136
AleI CACNNNNGTG 2 cut(s) 798, 1159
AluBI AGCT 6 cut(s) 55, 409, 442, 454, 1020, 1178
AluI AGCT 6 cut(s) 55, 409, 442, 454, 1020, 1178
Alw21I GWGCWC 3 cut(s) 84, 411, 793
Alw26I GTCTC 4 cut(s) 122, 392, 590, 749
AlwI GGATC 4 cut(s) 649, 976, 991, 1065
Ama87I CYCGRG 3 cut(s) 404, 659, 938
AoxI GGCC 8 cut(s) 180, 370, 494, 724, 751, 864, 882, 1031
ApeKI GCWGC 1 cut(s) 292
AspS9I GGNCC 3 cut(s) 550, 725, 820
AsuC2I CCSGG 1 cut(s) 976
AsuHPI GGTGA 6 cut(s) 35, 163, 374, 739, 746, 1126
AvaI CYCGRG 3 cut(s) 404, 659, 938
AvaII GGWCC 2 cut(s) 550, 820
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 939
BalI TGGCCA 1 cut(s) 884
BanI GGYRCC 5 cut(s) 446, 542, 803, 845, 971
BanII GRGCYC 2 cut(s) 302, 411
BbsI GAAGAC 2 cut(s) 686, 1097
Bbv12I GWGCWC 3 cut(s) 84, 411, 793
BbvI GCAGC 1 cut(s) 304
BccI CCATC 7 cut(s) 494, 692, 699, 709, 777, 935, 1055
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 4 cut(s) 914, 1035, 1055, 1138
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 1 cut(s) 976
BcoDI GTCTC 4 cut(s) 122, 392, 590, 749
BfuAI ACCTGC 1 cut(s) 731
BglII AGATCT 1 cut(s) 66
BisI GCNGC 7 cut(s) 220, 293, 621, 754, 867, 1072, 1098
BlsI GCNGC 7 cut(s) 221, 294, 622, 755, 868, 1073, 1099
Bme1390I CCNGG 5 cut(s) 914, 976, 1035, 1055, 1138
Bme18I GGWCC 2 cut(s) 550, 820
BmeT110I CYCGRG 3 cut(s) 404, 659, 938
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 3 cut(s) 550, 725, 820
BmiI GGNNCC 7 cut(s) 448, 544, 552, 805, 822, 847, 973
BmrFI CCNGG 5 cut(s) 914, 976, 1035, 1055, 1138
BmsI GCATC 2 cut(s) 76, 247
BoxI GACNNNNGTC 1 cut(s) 741
BpiI GAAGAC 2 cut(s) 686, 1097
BpuEI CTTGAG 4 cut(s) 297, 614, 1046, 1142
BpuMI CCSGG 1 cut(s) 976
BsaBI GATNNNNATC 2 cut(s) 764, 1046
BsaI GGTCTC 4 cut(s) 122, 392, 590, 749
BsaJI CCNNGG 6 cut(s) 177, 322, 367, 546, 828, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 829, 991
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 885
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 2 cut(s) 306, 1081
Bse8I GATNNNNATC 2 cut(s) 764, 1046
BseBI CCWGG 4 cut(s) 914, 1035, 1055, 1138
BseDI CCNNGG 6 cut(s) 177, 322, 367, 546, 828, 1137
BseGI GGATG 3 cut(s) 20, 788, 1126
BseJI GATNNNNATC 2 cut(s) 764, 1046
BseLI CCNNNNNNNGG 2 cut(s) 829, 991
BseMI GCAATG 2 cut(s) 306, 1081
BseMII CTCAG 2 cut(s) 336, 450
BseNI ACTGG 1 cut(s) 885
BseSI GKGCMC 1 cut(s) 939
BseX3I CGGCCG 1 cut(s) 751
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 754
BshFI GGCC 8 cut(s) 182, 372, 496, 726, 753, 866, 884, 1033
BshNI GGYRCC 5 cut(s) 446, 542, 803, 845, 971
BsiEI CGRYCG 1 cut(s) 754
BsiHKAI GWGCWC 3 cut(s) 84, 411, 793
BsiHKCI CYCGRG 3 cut(s) 404, 659, 938
BsiSI CCGG 2 cut(s) 750, 975
BslFI GGGAC 2 cut(s) 490, 536
BslI CCNNNNNNNGG 2 cut(s) 829, 991
BsmAI GTCTC 4 cut(s) 122, 392, 590, 749
BsmFI GGGAC 2 cut(s) 490, 536
BsnI GGCC 8 cut(s) 182, 372, 496, 726, 753, 866, 884, 1033
Bso31I GGTCTC 4 cut(s) 122, 392, 590, 749
BsoBI CYCGRG 3 cut(s) 404, 659, 938
Bsp1286I GDGCHC 5 cut(s) 84, 302, 411, 793, 939
Bsp19I CCATGG 2 cut(s) 322, 546
BspACI CCGC 8 cut(s) 77, 220, 621, 754, 867, 1071, 1095, 1098
BspANI GGCC 8 cut(s) 182, 372, 496, 726, 753, 866, 884, 1033
BspCNI CTCAG 2 cut(s) 337, 451
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 7 cut(s) 448, 544, 552, 805, 822, 847, 973
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 4 cut(s) 649, 976, 991, 1065
BspT107I GGYRCC 5 cut(s) 446, 542, 803, 845, 971
BspTNI GGTCTC 4 cut(s) 122, 392, 590, 749
BsrDI GCAATG 2 cut(s) 306, 1081
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 1 cut(s) 885
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 6 cut(s) 177, 322, 367, 546, 828, 1137
BssT1I CCWWGG 5 cut(s) 177, 322, 367, 546, 828
Bst2UI CCWGG 4 cut(s) 914, 1035, 1055, 1138
Bst4CI ACNGT 2 cut(s) 571, 601
BstC8I GCNNGC 3 cut(s) 91, 124, 864
BstDEI CTNAG 2 cut(s) 345, 459
BstDSI CCRYGG 2 cut(s) 322, 546
BstEII GGTNACC 2 cut(s) 41, 362
BstF5I GGATG 3 cut(s) 20, 788, 1126
BstFNI CGCG 1 cut(s) 77
BstMAI GTCTC 4 cut(s) 122, 392, 590, 749
BstMCI CGRYCG 1 cut(s) 754
BstMWI GCNNNNNNNGC 2 cut(s) 95, 421
BstNI CCWGG 4 cut(s) 914, 1035, 1055, 1138
BstNSI RCATGY 3 cut(s) 219, 379, 641
BstPAI GACNNNNGTC 1 cut(s) 741
BstPI GGTNACC 2 cut(s) 41, 362
BstSCI CCNGG 5 cut(s) 912, 974, 1033, 1053, 1136
BstSLI GKGCMC 1 cut(s) 939
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 2 cut(s) 686, 1097
BstX2I RGATCY 4 cut(s) 66, 981, 996, 1057
BstXI CCANNNNNNTGG 3 cut(s) 380, 1054, 1161
BstYI RGATCY 4 cut(s) 66, 981, 996, 1057
BstZI CGGCCG 1 cut(s) 751
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 8 cut(s) 182, 372, 496, 726, 753, 866, 884, 1033
BtgI CCRYGG 2 cut(s) 322, 546
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 20, 788, 1126
BtsIMutI CAGTG 4 cut(s) 390, 456, 567, 892
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 3 cut(s) 91, 124, 864
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 3 cut(s) 550, 725, 820
CseI GACGC 2 cut(s) 83, 746
Csp6I GTAC 2 cut(s) 135, 667
CspCI CAANNNNNGTGG 2 cut(s) 813, 848
CviQI GTAC 2 cut(s) 135, 667
DdeI CTNAG 2 cut(s) 345, 459
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 751, 882
EagI CGGCCG 1 cut(s) 751
Ecl136II GAGCTC 1 cut(s) 409
EclXI CGGCCG 1 cut(s) 751
Eco130I CCWWGG 5 cut(s) 177, 322, 367, 546, 828
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 302, 411
Eco31I GGTCTC 4 cut(s) 122, 392, 590, 749
Eco47I GGWCC 2 cut(s) 550, 820
Eco52I CGGCCG 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 1022
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 3 cut(s) 404, 659, 938
Eco91I GGTNACC 2 cut(s) 41, 362
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 2 cut(s) 725, 820
EcoO65I GGTNACC 2 cut(s) 41, 362
EcoRII CCWGG 4 cut(s) 912, 1033, 1053, 1136
EcoT14I CCWWGG 5 cut(s) 177, 322, 367, 546, 828
EcoT38I GRGCYC 2 cut(s) 302, 411
ErhI CCWWGG 5 cut(s) 177, 322, 367, 546, 828
FalI AAGNNNNNCTT 4 cut(s) 671, 703, 1004, 1036
FaqI GGGAC 2 cut(s) 490, 536
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 1 cut(s) 960
Fnu4HI GCNGC 7 cut(s) 220, 293, 621, 754, 867, 1072, 1098
FokI GGATG 3 cut(s) 7, 795, 1133
FriOI GRGCYC 2 cut(s) 302, 411
Fsp4HI GCNGC 7 cut(s) 220, 293, 621, 754, 867, 1072, 1098
GluI GCNGC 7 cut(s) 220, 293, 621, 754, 867, 1072, 1098
GsaI CCCAGC 1 cut(s) 589
HaeIII GGCC 8 cut(s) 182, 372, 496, 726, 753, 866, 884, 1033
HapII CCGG 2 cut(s) 750, 975
HgaI GACGC 2 cut(s) 83, 746
HincII GTYRAC 1 cut(s) 961
HindII GTYRAC 1 cut(s) 961
HindIII AAGCTT 1 cut(s) 1176
HinfI GANTC 3 cut(s) 26, 711, 962
HpaII CCGG 2 cut(s) 750, 975
HphI GGTGA 6 cut(s) 35, 163, 374, 739, 746, 1126
Hpy166II GTNNAC 7 cut(s) 18, 190, 283, 565, 835, 890, 961
Hpy188I TCNGA 4 cut(s) 25, 73, 164, 241
Hpy188III TCNNGA 7 cut(s) 209, 254, 574, 715, 856, 1000, 1063
Hpy8I GTNNAC 7 cut(s) 18, 190, 283, 565, 835, 890, 961
Hpy99I CGWCG 2 cut(s) 77, 962
HpyAV CCTTC 2 cut(s) 19, 1006
HpyCH4III ACNGT 2 cut(s) 571, 601
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 6 cut(s) 98, 260, 270, 434, 896, 906
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 421
HpyF3I CTNAG 2 cut(s) 345, 459
HpySE526I ACGT 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 642
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 76, 247
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 7 cut(s) 41, 59, 209, 362, 514, 601, 734
MboII GAAGA 6 cut(s) 211, 679, 691, 991, 1015, 1102
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 4 cut(s) 66, 981, 996, 1057
MhlI GDGCHC 5 cut(s) 84, 302, 411, 793, 939
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 3 cut(s) 225, 351, 555
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 2 cut(s) 35, 956
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 884
MscI TGGCCA 1 cut(s) 884
MslI CAYNNNNRTG 4 cut(s) 152, 798, 932, 1159
Msp20I TGGCCA 1 cut(s) 884
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 2 cut(s) 750, 975
MspR9I CCNGG 5 cut(s) 914, 976, 1035, 1055, 1138
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 4 cut(s) 914, 1035, 1055, 1138
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 95, 421
NciI CCSGG 1 cut(s) 976
NcoI CCATGG 2 cut(s) 322, 546
NlaIV GGNNCC 7 cut(s) 448, 544, 552, 805, 822, 847, 973
NmuCI GTSAC 6 cut(s) 41, 59, 209, 362, 601, 734
NspI RCATGY 3 cut(s) 219, 379, 641
OliI CACNNNNGTG 2 cut(s) 798, 1159
PceI AGGCCT 1 cut(s) 496
PciI ACATGT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 5 cut(s) 81, 201, 240, 597, 936
PfeI GAWTC 1 cut(s) 711
PkrI GCNGC 7 cut(s) 221, 294, 622, 755, 868, 1073, 1099
PleI GAGTC 2 cut(s) 34, 956
PpsI GAGTC 2 cut(s) 34, 956
PpuMI RGGWCCY 1 cut(s) 820
PscI ACATGT 1 cut(s) 375
PshAI GACNNNNGTC 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 4 cut(s) 912, 1033, 1053, 1136
PspEI GGTNACC 2 cut(s) 41, 362
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 4 cut(s) 912, 1033, 1053, 1136
PspN4I GGNNCC 7 cut(s) 448, 544, 552, 805, 822, 847, 973
PspPI GGNCC 3 cut(s) 550, 725, 820
PspPPI RGGWCCY 1 cut(s) 820
PsuI RGATCY 4 cut(s) 66, 981, 996, 1057
RsaI GTAC 2 cut(s) 136, 668
RsaNI GTAC 2 cut(s) 135, 667
RseI CAYNNNNRTG 4 cut(s) 152, 798, 932, 1159
SacI GAGCTC 1 cut(s) 411
SalI GTCGAC 1 cut(s) 959
SatI GCNGC 7 cut(s) 220, 293, 621, 754, 867, 1072, 1098
Sau96I GGNCC 3 cut(s) 550, 725, 820
SchI GAGTC 2 cut(s) 35, 956
ScrFI CCNGG 5 cut(s) 914, 976, 1035, 1055, 1138
SduI GDGCHC 5 cut(s) 84, 302, 411, 793, 939
SfaNI GCATC 2 cut(s) 76, 247
SinI GGWCC 2 cut(s) 550, 820
SmiMI CAYNNNNRTG 4 cut(s) 152, 798, 932, 1159
SmlI CTYRAG 4 cut(s) 312, 629, 1061, 1157
SmoI CTYRAG 4 cut(s) 312, 629, 1061, 1157
Sse9I AATT 3 cut(s) 225, 351, 555
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 8 cut(s) 77, 220, 621, 754, 867, 1071, 1095, 1098
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 5 cut(s) 912, 974, 1033, 1053, 1136
StyI CCWWGG 5 cut(s) 177, 322, 367, 546, 828
TaaI ACNGT 2 cut(s) 571, 601
TaiI ACGT 1 cut(s) 429
TaqI TCGA 4 cut(s) 84, 768, 960, 1023
TasI AATT 3 cut(s) 225, 351, 555
TauI GCSGC 6 cut(s) 222, 623, 756, 869, 1074, 1100
TfiI GAWTC 1 cut(s) 711
TscAI CASTG 4 cut(s) 397, 463, 574, 892
TseFI GTSAC 6 cut(s) 41, 59, 209, 362, 601, 734
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 6 cut(s) 41, 59, 209, 362, 601, 734
TspGWI ACGGA 2 cut(s) 810, 1119
TspRI CASTG 4 cut(s) 397, 463, 574, 892
VpaK11BI GGWCC 2 cut(s) 550, 820
XceI RCATGY 3 cut(s) 219, 379, 641
XcmI CCANNNNNNNNNTGG 3 cut(s) 145, 151, 184
XmiI GTMKAC 1 cut(s) 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.