Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010679

Physical Location & Seq

Genomic Coordinates Reverse (-)

8590599 .. 8593129

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGACCTTCTTGTTCACCTCTGAATCAGTCAATGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCAGACGCAGTGCTCGATGCCTGCCTTGCACAAGACCCTGAGAGCAAGGTGGCCTGTGAAACCTGCACCAAGACCAACATGGTCATGGTCTTCGGAGAGATCACCACCAAGGCCAATGTAGACTATGAGAAGATTGTTCGTGACACATGCCGTACAATTGGCTTTGTATCAGACGATGTTGGTCTTGATGCTGACAATTGCAAGGTTCTTGTGAACATTGAGCAGCAGAGCCCTGACATTGCTCAAGGTGTCCATGGCCATTTGACCAAAAGGCCTGAGGAGATTGGTGCTGGTGACCAAGGCCACATGTTTGGCTATGCCACTGATGAGACCCCTGAGCTCATGCCCCTCAGCCATGTCCTTGCAACCAAGCTCGGTGCTAAGCTCACCGAGGCTCGCAAGAATGGTACTTGTGCTTGGTTGAGGCCTGATGGCAAGACCCAAGTGACTGTTGAGTACTACAATGACAAGGGTGCCATGGTTCCAATTCGTGTCCACACTGTCCTAATTTCGACCCAGCACGACGAGACTGTGACAAACGATGAGATTGCTGCTGATCTCAAGGAGCATGTGATCAAGCCTGTGATCCCTGAGAAGTACCTTGATGAGAAGACCATCTTCCATCTCAACCCATCTGGCCGATTCGTCATCGGAGGGCCTCATGGTGATGCTGGTCTCACTGGCAGGAAGATCATCATTGACACCTATGGAGGATGGGGAGCTCATGGTGGTGGTGCCTTCTCTGGGAAGGACCCAACTAAGGTGGACAGGAGTGGGGCCTACATTGTGAGGCAGGCTGCCAAGAGCATTGTGGCCAGTGGACTTGCCAGGAGGTGCATTGTGCAAGTTTCATATGCCATTGGTGTGCCTGAGCCTTTGTCTGTTTTTGTTGATTCTTATGGCACTGGGAAGATCCCAGACAAGGAAATTCTCAAGATTGTGAAGGAGAGCTTTGATTTCAGGCCTGGTATGATTGCCATCAACCTAGATCTCAAGAGGGGTGGCAATGGAAGGTTTTTGAAGACTGCTGCCTATGGGCATTTTGGCAGGGATGACACTGACTTCACATGGGAGGTGGTCAAGCCACTCAAATGGGACAAGGTCCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004478 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019438 GO:0019748 GO:0019752 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

394

Amino Acids

42.91

Weight (kDa)

5.68

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17390
fragaria_vesca	FvH4_4g21340 FvH4_4g21340 FvH4_4g21340 FvH4_4g21340 FvH4_4g21340 FvH4_4g21340
malus_domestica	MD13G1141700.v1.1 MD16G1138300.v1.1
prunus_persica	Prupe.1G107000_v2.0.a1 Prupe.1G107000_v2.0.a1 Prupe.1G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427101
rosa_laevigata	RLG00000007261
rosa_roxburghii	Rroxscaffold_5G00368930
rosa_rugosa	Rorug04G0216100
rosa_samantha	Rh4AG271800 Rh4BG277700 Rh4CG292500 Rh4DG275300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	542, 803
AccI	GTMKAC	1 cut(s)	189
AclWI	GGATC	2 cut(s)	649, 976
AcoI	YGGCCR	3 cut(s)	325, 706, 882
AcsI	RAATTY	1 cut(s)	996
AfaI	GTAC	4 cut(s)	223, 478, 527, 668
AfiI	CCNNNNNNNGG	3 cut(s)	813, 829, 991
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	1 cut(s)	1090
AjnI	CCWGG	2 cut(s)	896, 1033
AluBI	AGCT	7 cut(s)	55, 409, 442, 454, 791, 1020, 1178
AluI	AGCT	7 cut(s)	55, 409, 442, 454, 791, 1020, 1178
Alw21I	GWGCWC	3 cut(s)	84, 411, 793
Alw26I	GTCTC	3 cut(s)	392, 590, 749
AlwI	GGATC	2 cut(s)	649, 976
ApeKI	GCWGC	4 cut(s)	292, 620, 866, 1097
ApoI	RAATTY	1 cut(s)	996
AspS9I	GGNCC	4 cut(s)	725, 820, 846, 1171
AsuHPI	GGTGA	6 cut(s)	10, 35, 163, 374, 448, 746
AvaII	GGWCC	2 cut(s)	820, 1171
AxyI	CCTNAGG	1 cut(s)	345
BalI	TGGCCA	2 cut(s)	327, 884
BanI	GGYRCC	2 cut(s)	542, 803
BanII	GRGCYC	3 cut(s)	302, 411, 793
BbsI	GAAGAC	3 cut(s)	151, 686, 1097
Bbv12I	GWGCWC	3 cut(s)	84, 411, 793
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	4 cut(s)	304, 607, 853, 1084
BccI	CCATC	6 cut(s)	494, 692, 699, 709, 777, 1055
BceAI	ACGGC	1 cut(s)	204
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	2 cut(s)	898, 1035
BclI	TGATCA	2 cut(s)	61, 642
BcoDI	GTCTC	3 cut(s)	392, 590, 749
BfaI	CTAG	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	2 cut(s)	66, 1057
BisI	GCNGC	4 cut(s)	293, 621, 867, 1098
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	4 cut(s)	294, 622, 868, 1099
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	2 cut(s)	898, 1035
Bme18I	GGWCC	2 cut(s)	820, 1171
BmgT120I	GGNCC	4 cut(s)	725, 820, 846, 1171
BmiI	GGNNCC	5 cut(s)	544, 552, 805, 822, 847
BmrFI	CCNGG	2 cut(s)	898, 1035
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	3 cut(s)	76, 247, 727
BmuI	ACTGGG	1 cut(s)	984
BpiI	GAAGAC	3 cut(s)	151, 686, 1097
Bpu10I	CCTNAGC	3 cut(s)	405, 419, 939
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	4 cut(s)	297, 614, 986, 1046
BsaBI	GATNNNNATC	1 cut(s)	1046
BsaI	GGTCTC	2 cut(s)	392, 749
BsaJI	CCNNGG	5 cut(s)	177, 322, 367, 459, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	813, 829, 991
Bse1I	ACTGG	3 cut(s)	754, 885, 979
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	306, 1081
Bse8I	GATNNNNATC	1 cut(s)	1046
BseBI	CCWGG	2 cut(s)	898, 1035
BseDI	CCNNGG	5 cut(s)	177, 322, 367, 459, 546
BseGI	GGATG	2 cut(s)	788, 1126
BseJI	GATNNNNATC	1 cut(s)	1046
BseLI	CCNNNNNNNGG	3 cut(s)	813, 829, 991
BseMI	GCAATG	2 cut(s)	306, 1081
BseMII	CTCAG	7 cut(s)	84, 99, 336, 396, 433, 651, 930
BseNI	ACTGG	3 cut(s)	754, 885, 979
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	304, 607, 853, 1084
BseYI	CCCAGC	1 cut(s)	585
BsgI	GTGCAG	1 cut(s)	118
BshNI	GGYRCC	2 cut(s)	542, 803
BsiHKAI	GWGCWC	3 cut(s)	84, 411, 793
BslFI	GGGAC	1 cut(s)	1178
BslI	CCNNNNNNNGG	3 cut(s)	813, 829, 991
BsmAI	GTCTC	3 cut(s)	392, 590, 749
BsmFI	GGGAC	1 cut(s)	1178
Bso31I	GGTCTC	2 cut(s)	392, 749
Bsp1286I	GDGCHC	4 cut(s)	84, 302, 411, 793
Bsp143I	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	2 cut(s)	322, 546
BspCNI	CTCAG	7 cut(s)	83, 100, 337, 397, 432, 652, 931
BspLI	GGNNCC	5 cut(s)	544, 552, 805, 822, 847
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	649, 976
BspT107I	GGYRCC	2 cut(s)	542, 803
BspTNI	GGTCTC	2 cut(s)	392, 749
BsrDI	GCAATG	2 cut(s)	306, 1081
BsrI	ACTGG	3 cut(s)	754, 885, 979
BssECI	CCNNGG	5 cut(s)	177, 322, 367, 459, 546
BssMI	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
BssT1I	CCWWGG	4 cut(s)	177, 322, 367, 546
Bst2UI	CCWGG	2 cut(s)	898, 1035
Bst4CI	ACNGT	3 cut(s)	520, 571, 601
BstC8I	GCNNGC	3 cut(s)	91, 466, 864
BstDEI	CTNAG	9 cut(s)	70, 108, 345, 405, 419, 450, 660, 828, 939
BstDSI	CCRYGG	2 cut(s)	322, 546
BstEII	GGTNACC	2 cut(s)	41, 362
BstF5I	GGATG	2 cut(s)	788, 1126
BstKTI	GATC	9 cut(s)	64, 69, 171, 628, 645, 657, 762, 984, 1060
BstMAI	GTCTC	3 cut(s)	392, 590, 749
BstMBI	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	2 cut(s)	898, 1035
BstNSI	RCATGY	3 cut(s)	219, 379, 641
BstPI	GGTNACC	2 cut(s)	41, 362
BstSCI	CCNGG	2 cut(s)	896, 1033
BstV1I	GCAGC	4 cut(s)	304, 607, 853, 1084
BstV2I	GAAGAC	3 cut(s)	151, 686, 1097
BstX2I	RGATCY	3 cut(s)	66, 981, 1057
BstXI	CCANNNNNNTGG	2 cut(s)	380, 1161
BstYI	RGATCY	3 cut(s)	66, 981, 1057
Bsu36I	CCTNAGG	1 cut(s)	345
BtgI	CCRYGG	2 cut(s)	322, 546
BtsCI	GGATG	2 cut(s)	788, 1126
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	7 cut(s)	84, 390, 567, 747, 892, 972, 1125
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	91, 466, 864
Cfr13I	GGNCC	4 cut(s)	725, 820, 846, 1171
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	222, 477, 526, 667
CspCI	CAANNNNNGTGG	4 cut(s)	813, 848, 1051, 1086
CviQI	GTAC	4 cut(s)	222, 477, 526, 667
DdeI	CTNAG	9 cut(s)	70, 108, 345, 405, 419, 450, 660, 828, 939
DpnI	GATC	9 cut(s)	63, 68, 170, 627, 644, 656, 761, 983, 1059
DpnII	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
EaeI	YGGCCR	3 cut(s)	325, 706, 882
Ecl136II	GAGCTC	2 cut(s)	409, 791
Eco130I	CCWWGG	4 cut(s)	177, 322, 367, 546
Eco147I	AGGCCT	3 cut(s)	343, 496, 1033
Eco24I	GRGCYC	3 cut(s)	302, 411, 793
Eco31I	GGTCTC	2 cut(s)	392, 749
Eco47I	GGWCC	2 cut(s)	820, 1171
Eco53kI	GAGCTC	2 cut(s)	409, 791
Eco81I	CCTNAGG	1 cut(s)	345
Eco91I	GGTNACC	2 cut(s)	41, 362
EcoICRI	GAGCTC	2 cut(s)	409, 791
EcoO109I	RGGNCCY	3 cut(s)	725, 820, 846
EcoO65I	GGTNACC	2 cut(s)	41, 362
EcoRII	CCWGG	2 cut(s)	896, 1033
EcoT14I	CCWWGG	4 cut(s)	177, 322, 367, 546
EcoT38I	GRGCYC	3 cut(s)	302, 411, 793
ErhI	CCWWGG	4 cut(s)	177, 322, 367, 546
FalI	AAGNNNNNCTT	4 cut(s)	671, 703, 1004, 1036
FaqI	GGGAC	1 cut(s)	1178
FauNDI	CATATG	1 cut(s)	922
FbaI	TGATCA	2 cut(s)	61, 642
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	293, 621, 867, 1098
FokI	GGATG	2 cut(s)	795, 1133
FriOI	GRGCYC	3 cut(s)	302, 411, 793
Fsp4HI	GCNGC	4 cut(s)	293, 621, 867, 1098
FspBI	CTAG	1 cut(s)	1055
GluI	GCNGC	4 cut(s)	293, 621, 867, 1098
GsaI	CCCAGC	1 cut(s)	589
HgaI	GACGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	1176
HinfI	GANTC	3 cut(s)	26, 711, 962
HphI	GGTGA	6 cut(s)	10, 35, 163, 374, 448, 746
Hpy166II	GTNNAC	6 cut(s)	18, 190, 283, 565, 835, 890
Hpy188I	TCNGA	6 cut(s)	25, 66, 73, 164, 241, 722
Hpy188III	TCNNGA	4 cut(s)	209, 254, 1003, 1063
Hpy8I	GTNNAC	6 cut(s)	18, 190, 283, 565, 835, 890
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	5 cut(s)	19, 811, 817, 1006, 1074
HpyCH4III	ACNGT	3 cut(s)	520, 571, 601
HpyCH4V	TGCA	6 cut(s)	98, 135, 270, 434, 906, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	9 cut(s)	70, 108, 345, 405, 419, 450, 660, 828, 939
Ksp22I	TGATCA	2 cut(s)	61, 642
Kzo9I	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
LmnI	GCTCC	2 cut(s)	634, 788
Lsp1109I	GCAGC	4 cut(s)	304, 607, 853, 1084
LweI	GCATC	3 cut(s)	76, 247, 727
MaeI	CTAG	1 cut(s)	1055
MaeIII	GTNAC	5 cut(s)	41, 209, 362, 514, 601
MalI	GATC	9 cut(s)	63, 68, 170, 627, 644, 656, 761, 983, 1059
MboI	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
MboII	GAAGA	7 cut(s)	151, 211, 679, 691, 769, 991, 1102
MfeI	CAATTG	2 cut(s)	225, 265
MflI	RGATCY	3 cut(s)	66, 981, 1057
MhlI	GDGCHC	4 cut(s)	84, 302, 411, 793
MlsI	TGGCCA	2 cut(s)	327, 884
MluCI	AATT	5 cut(s)	225, 265, 555, 576, 996
MluNI	TGGCCA	2 cut(s)	327, 884
Mox20I	TGGCCA	2 cut(s)	327, 884
MscI	TGGCCA	2 cut(s)	327, 884
MslI	CAYNNNNRTG	5 cut(s)	152, 735, 798, 932, 1159
Msp20I	TGGCCA	2 cut(s)	327, 884
MspR9I	CCNGG	2 cut(s)	898, 1035
MunI	CAATTG	2 cut(s)	225, 265
MvaI	CCWGG	2 cut(s)	898, 1035
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	2 cut(s)	322, 546
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
NlaIV	GGNNCC	5 cut(s)	544, 552, 805, 822, 847
NmuCI	GTSAC	5 cut(s)	41, 209, 362, 514, 601
NspI	RCATGY	3 cut(s)	219, 379, 641
PceI	AGGCCT	3 cut(s)	343, 496, 1033
PciI	ACATGT	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	26, 711, 962
PflFI	GACNNNGTC	1 cut(s)	1169
PkrI	GCNGC	4 cut(s)	294, 622, 868, 1099
PpuMI	RGGWCCY	1 cut(s)	820
PscI	ACATGT	1 cut(s)	375
Psp124BI	GAGCTC	2 cut(s)	411, 793
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	2 cut(s)	896, 1033
PspEI	GGTNACC	2 cut(s)	41, 362
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	2 cut(s)	896, 1033
PspN4I	GGNNCC	5 cut(s)	544, 552, 805, 822, 847
PspPI	GGNCC	4 cut(s)	725, 820, 846, 1171
PspPPI	RGGWCCY	1 cut(s)	820
PsuI	RGATCY	3 cut(s)	66, 981, 1057
PsyI	GACNNNGTC	1 cut(s)	1169
RsaI	GTAC	4 cut(s)	223, 478, 527, 668
RsaNI	GTAC	4 cut(s)	222, 477, 526, 667
RseI	CAYNNNNRTG	5 cut(s)	152, 735, 798, 932, 1159
SacI	GAGCTC	2 cut(s)	411, 793
SatI	GCNGC	4 cut(s)	293, 621, 867, 1098
Sau3AI	GATC	9 cut(s)	61, 66, 168, 625, 642, 654, 759, 981, 1057
Sau96I	GGNCC	4 cut(s)	725, 820, 846, 1171
ScaI	AGTACT	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	898, 1035
SduI	GDGCHC	4 cut(s)	84, 302, 411, 793
SfaNI	GCATC	3 cut(s)	76, 247, 727
SinI	GGWCC	2 cut(s)	820, 1171
SmiMI	CAYNNNNRTG	5 cut(s)	152, 735, 798, 932, 1159
SmlI	CTYRAG	4 cut(s)	312, 629, 1001, 1061
SmoI	CTYRAG	4 cut(s)	312, 629, 1001, 1061
Sse9I	AATT	5 cut(s)	225, 265, 555, 576, 996
SseBI	AGGCCT	3 cut(s)	343, 496, 1033
SspMI	CTAG	1 cut(s)	1055
SstI	GAGCTC	2 cut(s)	411, 793
StuI	AGGCCT	3 cut(s)	343, 496, 1033
StyD4I	CCNGG	2 cut(s)	896, 1033
StyI	CCWWGG	4 cut(s)	177, 322, 367, 546
TaaI	ACNGT	3 cut(s)	520, 571, 601
TaqI	TCGA	2 cut(s)	84, 581
TasI	AATT	5 cut(s)	225, 265, 555, 576, 996
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	26, 711, 962
TscAI	CASTG	7 cut(s)	84, 397, 574, 754, 892, 979, 1132
TseFI	GTSAC	5 cut(s)	41, 209, 362, 514, 601
TseI	GCWGC	4 cut(s)	292, 620, 866, 1097
Tsp45I	GTSAC	5 cut(s)	41, 209, 362, 514, 601
TspDTI	ATGAA	1 cut(s)	909
TspRI	CASTG	7 cut(s)	84, 397, 574, 754, 892, 979, 1132
Tth111I	GACNNNGTC	1 cut(s)	1169
VpaK11BI	GGWCC	2 cut(s)	820, 1171
XapI	RAATTY	1 cut(s)	996
XceI	RCATGY	3 cut(s)	219, 379, 641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	145, 151, 877
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	1055
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.