MD16G1253400.v1.1

Spermidine hydroxycinnamoyl

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
28756571 .. 28757938
1368 bp
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UTR
Exon/CDS
Intron
MD16G1253400.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGGTGGTGAAATTCAAAGACTGCTGTGCACTGAAACCCTCTCAGCCAACATGGCAAGGTTGCCTAACTCTATCGGAATGGGATCAAGTCGGCGTCATAACTCATGTTCCCACAATCTACTTCTATAAACCAGACCATAACTTTGTCACATCATCTGACACCATCGCAAACACCCTCAAAGACTCATTAAGTCGTGCACTGGTGCCGTTCTATCCACTAGCAGGTCGTTTGCATTGGATTGGCGGAGGCCGCCTTGAGCTTGATTGCAATGCCGTGGGGGTTCGATTCATTGAAGCTGAGTCTAGTTCAAAACTCGACGACTTTGGTGACTTCTCACCTTCTCCAGAATATCACTATCTTATCCCAACTGTGGACTACACCCTCCCAATTCATGAACTTCCAATATTGCTTGTGCAATTGACTACGTTCAAATGTGGTGGTGTTAGTCTTAGCTTGGCAATATCACATGCTGTTGTTGATGGGCAAAGTGCATTGCATTTTATTTCTGAGTGGGCTAGGCTTGCAAGGGGTGAGCCAATTGAGGTGGTGCCATTTCTTGATCGAAAAGTCTTTCAAGCTTTAAACCTCCCAGCTGGAAGTGCTACTCTAGGGCTTGACCATTCAGAATTCAACCATCCTCCCCTTATACTTGGGCAAGCAGATAATATTGAGGAGAGGAAGAAGAAGACCACTGTCGCCATGTTGAGTCTTACTAAAGATCAAGTTGAGAAGCTTAAGCGGATGGCGAATGAGGGTACCAACTTCAACAACTCTGACACTAAGCGAGCTTACACGCGGTATGAGTCTGTGGCCGGACACATCTGGAGATGTGCTTCTAAAGCTAGAGATCACAAAAATGAACAGCCTACAGCTATGGGGGTTTGTGTTGACTCGCGGAGTCGCATGCAACCCCCACTGCCACAAGGATACTTTGGGAACGCAACGTTTGATGTAATTGCTACTAGTCTTGCTGGTGACTTGGTGACCAAGCCCTTAGGGTACGCATCAAGTAGAATAAGGGAGGCGATCGAGAAAGTGACAAACGATTATGTGCTGTCAGCAATTGATAACTTGAGGAACCAACCGGACTTGACAAGGTTCCAAGATCTTCAGGCTCTAGGGAGTGACCAGGGGCCTTTTTATGGAAACCCTAATCTTGGGGTAGTGAGCTGGTTGACACTGCCTCTATATGGTCTTGATTTTGGATGGGGAAAGGAAATTTATATGGGTCCTGGAACGCATGGTTTTGATGGGGACTCTCTGATCCTTCCAAGTCCTGATGGAAATGGTTCTGCGATTGTGGCCTTGTGTCTACAAGTTGCCCATATGGATGCTTTTAAGAAGCACTTCTATGAAGATATTATATGA

Protein Analysis

456

Amino Acids

50.25

Weight (kDa)

5.78

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 452 2.8e-123 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19070
fragaria_vesca FvH4_5g22390
malus_domestica MD16G1253400.v1.1
prunus_persica Prupe.1G079800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0210141
rosa_laevigata RLG00000003061
rosa_multiflora Rmu_sc0025548.1_g000002
rosa_roxburghii Rroxscaffold_3G00248590
rosa_rugosa Rorug07G0118800
rosa_samantha Rh7AG252300 Rh7BG247200 Rh7CG269300 Rh7DG259600
rosa_wichuraiana Rw7G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 3 cut(s) 202, 547, 755
AccI GTMKAC 1 cut(s) 1312
AccII CGCG 2 cut(s) 796, 895
AciI CCGC 5 cut(s) 243, 250, 739, 796, 895
AclI AACGTT 1 cut(s) 944
AclWI GGATC 2 cut(s) 90, 1258
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 3 cut(s) 11, 626, 1218
AcuI CTGAAG 1 cut(s) 1094
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 757, 1001
AfiI CCNNNNNNNGG 5 cut(s) 221, 370, 1142, 1157, 1190
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 7 cut(s) 16, 293, 309, 430, 575, 631, 766
AhlI ACTAGT 1 cut(s) 962
AjnI CCWGG 2 cut(s) 1128, 1231
Alw21I GWGCWC 2 cut(s) 31, 199
Alw44I GTGCAC 2 cut(s) 27, 195
AlwI GGATC 2 cut(s) 90, 1258
AoxI GGCC 4 cut(s) 247, 810, 1133, 1302
ApaLI GTGCAC 2 cut(s) 27, 195
ApoI RAATTY 3 cut(s) 11, 626, 1218
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 2 cut(s) 1288, 1346
Asp718I GGTACC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 1133, 1229
AsuHPI GGTGA 6 cut(s) 19, 327, 338, 542, 986, 994
AvaII GGWCC 1 cut(s) 1229
AxyI CCTNAGG 1 cut(s) 994
BaeGI GKGCMC 2 cut(s) 31, 199
BanI GGYRCC 3 cut(s) 202, 547, 755
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 2 cut(s) 31, 199
BccI CCATC 7 cut(s) 170, 473, 642, 736, 1200, 1244, 1274
BceAI ACGGC 2 cut(s) 190, 257
BciT130I CCWGG 2 cut(s) 1130, 1233
BciVI GTATCC 1 cut(s) 920
BcuI ACTAGT 1 cut(s) 962
BfaI CTAG 7 cut(s) 218, 303, 516, 608, 843, 963, 1118
BfmI CTRYAG 1 cut(s) 867
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 920
BglI GCCNNNNNGGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 1130, 1233
Bme18I GGWCC 1 cut(s) 1229
BmgT120I GGNCC 2 cut(s) 1133, 1229
BmiI GGNNCC 7 cut(s) 204, 549, 757, 1079, 1100, 1134, 1230
BmrFI CCNGG 2 cut(s) 1130, 1233
BmsI GCATC 2 cut(s) 1013, 1321
BoxI GACNNNNGTC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 327, 844
BpuEI CTTGAG 2 cut(s) 275, 1093
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 273, 1129
BsaWI WCCGGW 1 cut(s) 1084
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 370, 1142, 1157, 1190
Bse1I ACTGG 1 cut(s) 204
Bse21I CCTNAGG 1 cut(s) 994
Bse3DI GCAATG 2 cut(s) 274, 491
BseBI CCWGG 2 cut(s) 1130, 1233
BseDI CCNNGG 2 cut(s) 273, 1129
BseGI GGATG 4 cut(s) 634, 747, 1211, 1336
BseLI CCNNNNNNNGG 5 cut(s) 221, 370, 1142, 1157, 1190
BseMI GCAATG 2 cut(s) 274, 491
BseMII CTCAG 3 cut(s) 56, 288, 498
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 2 cut(s) 31, 199
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 2 cut(s) 796, 895
Bsh1285I CGRYCG 1 cut(s) 1029
BshFI GGCC 4 cut(s) 249, 812, 1135, 1304
BshNI GGYRCC 3 cut(s) 202, 547, 755
BsiEI CGRYCG 1 cut(s) 1029
BsiHKAI GWGCWC 2 cut(s) 31, 199
BsiSI CCGG 2 cut(s) 813, 1085
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 5 cut(s) 221, 370, 1142, 1157, 1190
BsmFI GGGAC 1 cut(s) 1268
BsnI GGCC 4 cut(s) 249, 812, 1135, 1304
Bsp1286I GDGCHC 2 cut(s) 31, 199
Bsp143I GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
BspACI CCGC 5 cut(s) 243, 250, 739, 796, 895
BspANI GGCC 4 cut(s) 249, 812, 1135, 1304
BspCNI CTCAG 3 cut(s) 55, 289, 499
BspFNI CGCG 2 cut(s) 796, 895
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 7 cut(s) 204, 549, 757, 1079, 1100, 1134, 1230
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 90, 1258
BspT107I GGYRCC 3 cut(s) 202, 547, 755
BspTI CTTAAG 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 274, 491
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 273, 1129
BssMI GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 1130, 1233
Bst4CI ACNGT 2 cut(s) 370, 694
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 734
BstC8I GCNNGC 4 cut(s) 522, 657, 786, 905
BstDEI CTNAG 6 cut(s) 42, 297, 449, 507, 780, 994
BstDSI CCRYGG 1 cut(s) 273
BstEII GGTNACC 1 cut(s) 982
BstF5I GGATG 4 cut(s) 634, 747, 1211, 1336
BstFNI CGCG 2 cut(s) 796, 895
BstKTI GATC 7 cut(s) 85, 562, 721, 850, 1029, 1108, 1266
BstMBI GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
BstMCI CGRYCG 1 cut(s) 1029
BstMWI GCNNNNNNNGC 6 cut(s) 52, 249, 521, 599, 839, 1301
BstNI CCWGG 2 cut(s) 1130, 1233
BstNSI RCATGY 2 cut(s) 470, 907
BstPAI GACNNNNGTC 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 982
BstSCI CCNGG 2 cut(s) 1128, 1231
BstSFI CTRYAG 1 cut(s) 867
BstSLI GKGCMC 2 cut(s) 31, 199
BstUI CGCG 2 cut(s) 796, 895
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 1105
Bsu36I CCTNAGG 1 cut(s) 994
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 4 cut(s) 249, 812, 1135, 1304
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 4 cut(s) 634, 747, 1211, 1336
BtsI GCAGTG 2 cut(s) 914, 1178
BtsIMutI CAGTG 5 cut(s) 29, 197, 690, 914, 1178
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 4 cut(s) 522, 657, 786, 905
CciI TCATGA 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 1133, 1229
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 756, 1000
CspCI CAANNNNNGTGG 4 cut(s) 418, 453, 525, 560
CviAII CATG 7 cut(s) 51, 104, 392, 467, 700, 904, 1241
CviQI GTAC 2 cut(s) 756, 1000
DdeI CTNAG 6 cut(s) 42, 297, 449, 507, 780, 994
DpnI GATC 7 cut(s) 84, 561, 720, 849, 1028, 1107, 1265
DpnII GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
DraI TTTAAA 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 810
EciI GGCGGA 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 1229
Eco57I CTGAAG 1 cut(s) 1094
Eco81I CCTNAGG 1 cut(s) 994
Eco91I GGTNACC 1 cut(s) 982
EcoO109I RGGNCCY 2 cut(s) 1133, 1229
EcoO65I GGTNACC 1 cut(s) 982
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 2 cut(s) 1128, 1231
FaeI CATG 7 cut(s) 54, 107, 395, 470, 703, 907, 1244
FalI AAGNNNNNCTT 2 cut(s) 1331, 1363
FaqI GGGAC 1 cut(s) 1268
FatI CATG 7 cut(s) 50, 103, 391, 466, 699, 903, 1240
FauNDI CATATG 1 cut(s) 1326
FblI GTMKAC 1 cut(s) 1312
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 4 cut(s) 621, 754, 1218, 1343
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 7 cut(s) 218, 303, 516, 608, 843, 963, 1118
GluI GCNGC 1 cut(s) 250
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 2 cut(s) 327, 844
HaeIII GGCC 4 cut(s) 249, 812, 1135, 1304
HapII CCGG 2 cut(s) 813, 1085
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 7 cut(s) 54, 107, 395, 470, 703, 907, 1244
HincII GTYRAC 2 cut(s) 889, 1176
HindII GTYRAC 2 cut(s) 889, 1176
HindIII AAGCTT 2 cut(s) 576, 731
HinfI GANTC 8 cut(s) 182, 285, 299, 706, 803, 890, 898, 1256
HpaII CCGG 2 cut(s) 813, 1085
HphI GGTGA 6 cut(s) 19, 327, 338, 542, 986, 994
Hpy166II GTNNAC 6 cut(s) 29, 197, 373, 889, 1176, 1313
Hpy188I TCNGA 6 cut(s) 76, 157, 508, 625, 775, 1263
Hpy188III TCNNGA 7 cut(s) 344, 392, 557, 823, 1030, 1196, 1277
Hpy8I GTNNAC 6 cut(s) 29, 197, 373, 889, 1176, 1313
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 348, 1277
HpyCH4III ACNGT 2 cut(s) 370, 694
HpyCH4IV ACGT 2 cut(s) 425, 944
HpyCH4V TGCA 9 cut(s) 29, 197, 232, 267, 415, 491, 496, 524, 907
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 249, 521, 599, 839, 1301
HpyF3I CTNAG 6 cut(s) 42, 297, 449, 507, 780, 994
HpySE526I ACGT 2 cut(s) 425, 944
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 7 cut(s) 54, 107, 395, 470, 703, 907, 1244
KpnI GGTACC 1 cut(s) 759
Kzo9I GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
LweI GCATC 2 cut(s) 1013, 1321
MaeI CTAG 7 cut(s) 218, 303, 516, 608, 843, 963, 1118
MaeII ACGT 2 cut(s) 425, 944
MaeIII GTNAC 6 cut(s) 145, 326, 974, 982, 1036, 1124
MalI GATC 7 cut(s) 84, 561, 720, 849, 1028, 1107, 1265
MboI GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
MboII GAAGA 5 cut(s) 691, 694, 697, 1100, 1367
MfeI CAATTG 3 cut(s) 416, 537, 1062
MflI RGATCY 1 cut(s) 1105
MhlI GDGCHC 2 cut(s) 31, 199
MluCI AATT 8 cut(s) 11, 387, 416, 537, 626, 954, 1062, 1218
MlyI GAGTC 7 cut(s) 176, 308, 715, 812, 884, 907, 1250
MroXI GAANNNNTTC 2 cut(s) 1288, 1346
MseI TTAA 4 cut(s) 188, 581, 735, 1338
MslI CAYNNNNRTG 3 cut(s) 855, 1329, 1350
MspA1I CMGCKG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 2 cut(s) 813, 1085
MspR9I CCNGG 2 cut(s) 1130, 1233
MunI CAATTG 3 cut(s) 416, 537, 1062
MvaI CCWGG 2 cut(s) 1130, 1233
MvnI CGCG 2 cut(s) 796, 895
MwoI GCNNNNNNNGC 6 cut(s) 52, 249, 521, 599, 839, 1301
NdeI CATATG 1 cut(s) 1326
NdeII GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
NlaIII CATG 7 cut(s) 54, 107, 395, 470, 703, 907, 1244
NlaIV GGNNCC 7 cut(s) 204, 549, 757, 1079, 1100, 1134, 1230
NmuCI GTSAC 6 cut(s) 145, 326, 974, 982, 1036, 1124
NspI RCATGY 2 cut(s) 470, 907
PaeI GCATGC 1 cut(s) 907
PagI TCATGA 1 cut(s) 391
PdmI GAANNNNTTC 2 cut(s) 1288, 1346
PfeI GAWTC 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 1231
PkrI GCNGC 1 cut(s) 251
Ple19I CGATCG 1 cut(s) 1029
PleI GAGTC 7 cut(s) 176, 307, 714, 811, 884, 906, 1250
PpsI GAGTC 7 cut(s) 176, 307, 714, 811, 884, 906, 1250
PpuMI RGGWCCY 1 cut(s) 1229
PshAI GACNNNNGTC 1 cut(s) 692
Psp1406I AACGTT 1 cut(s) 944
Psp5II RGGWCCY 1 cut(s) 1229
Psp6I CCWGG 2 cut(s) 1128, 1231
PspEI GGTNACC 1 cut(s) 982
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 2 cut(s) 1128, 1231
PspN4I GGNNCC 7 cut(s) 204, 549, 757, 1079, 1100, 1134, 1230
PspPI GGNCC 2 cut(s) 1133, 1229
PspPPI RGGWCCY 1 cut(s) 1229
PsuI RGATCY 1 cut(s) 1105
PvuI CGATCG 1 cut(s) 1029
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 2 cut(s) 757, 1001
RsaNI GTAC 2 cut(s) 756, 1000
RseI CAYNNNNRTG 3 cut(s) 855, 1329, 1350
SaqAI TTAA 4 cut(s) 188, 581, 735, 1338
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 7 cut(s) 82, 559, 718, 847, 1026, 1105, 1263
Sau96I GGNCC 2 cut(s) 1133, 1229
SchI GAGTC 7 cut(s) 176, 308, 715, 812, 884, 907, 1250
ScrFI CCNGG 2 cut(s) 1130, 1233
SduI GDGCHC 2 cut(s) 31, 199
SfaNI GCATC 2 cut(s) 1013, 1321
SfcI CTRYAG 1 cut(s) 867
SinI GGWCC 1 cut(s) 1229
SmiMI CAYNNNNRTG 3 cut(s) 855, 1329, 1350
SmlI CTYRAG 3 cut(s) 254, 734, 1072
SmoI CTYRAG 3 cut(s) 254, 734, 1072
SpeI ACTAGT 1 cut(s) 962
SphI GCATGC 1 cut(s) 907
Sse9I AATT 8 cut(s) 11, 387, 416, 537, 626, 954, 1062, 1218
SsiI CCGC 5 cut(s) 243, 250, 739, 796, 895
SspI AATATT 2 cut(s) 405, 667
SspMI CTAG 7 cut(s) 218, 303, 516, 608, 843, 963, 1118
StyD4I CCNGG 2 cut(s) 1128, 1231
TaaI ACNGT 2 cut(s) 370, 694
TaiI ACGT 2 cut(s) 428, 947
TaqI TCGA 4 cut(s) 283, 315, 562, 1029
TasI AATT 8 cut(s) 11, 387, 416, 537, 626, 954, 1062, 1218
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 4 cut(s) 188, 581, 735, 1338
Tru9I TTAA 4 cut(s) 188, 581, 735, 1338
TscAI CASTG 5 cut(s) 36, 204, 697, 921, 1185
TseFI GTSAC 6 cut(s) 145, 326, 974, 982, 1036, 1124
Tsp45I GTSAC 6 cut(s) 145, 326, 974, 982, 1036, 1124
TspDTI ATGAA 5 cut(s) 277, 380, 408, 873, 1368
TspRI CASTG 5 cut(s) 36, 204, 697, 921, 1185
Vha464I CTTAAG 1 cut(s) 734
VneI GTGCAC 2 cut(s) 27, 195
VpaK11BI GGWCC 1 cut(s) 1229
XapI RAATTY 3 cut(s) 11, 626, 1218
XceI RCATGY 2 cut(s) 470, 907
XmiI GTMKAC 1 cut(s) 1312
XmnI GAANNNNTTC 2 cut(s) 1288, 1346
XspI CTAG 7 cut(s) 218, 303, 516, 608, 843, 963, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.