Rmu_sc0025548.1_g000002

Spermidine hydroxycinnamoyl

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025548.1
Physical Location & Seq
Forward (+)
5846 .. 7264
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025548.1_g000002.1.cds

Sequence Viewer

Length: 1419 bp
atggaggtgaagttcaaaggctgcgaagcagtgaaaccctctaaacccacatggaaaggttccttaactctatcggaatgggatcaagttggaaccatcactcatattcccaccatctacttctacaaatcaaaccctaactgggtcacaccagatgacgtaatccccaacacacttaaagactcattagcccgtgcattggtttccttctaccccttagcaggccgcctgcgttggataggtggcggccgcctcgagctcgactgcaatgccatgggggtcgaattcattgaagccgagtccgactccaaactcgaagactttggtgacttatccccatcaccagagtataactatcttgtccccatggttgactatagcctcccgattcatgaacttcccttgttgcttgttcaattgactaggttcaagtgtggtggtgttagtcttagcctcaccatttcacatgctgttgttgacggcccaagtgcactacatttcatttctgagtgggcccgccttgctaggggtgagccattggaggtaccaccatttttggatcgaaaagccatgcaaggaggagattccagcagccggacagcagcaaaacctccacggcttgaccattcagagttcgaccagccgccccttttactggggcaatcagataacgtacaggaaagaaagaagaaaaccactgttgccatgctaagacttggtaaagatcagctcgagaaactcaagcgtaaggctaatgatagttacaacctttacaacaacaattaccctcttggcagtactactaatcgtggcagttacacacgttacgagacaatttcggggcatatatggagatgtgcttgcaaggcaaggaaccacaaagccgagcagccaacggcattgggagtttgcgttgactcacgtagtcgaatgcaacccccattgcctcagggctacttcggaaacgcaaccttcgatgtgattgcgacgagtcattcgggggagctggtttcaaaaccattggggtacgctgcgagtagaataagggaggcgatcgagaaggtgtcgaatgattacgtgttgtctgcaattgaaaacttgaagaaccaaccggatttgactcggtttcaagaccttcatgctttgggaagtgaccaagggcctttctatggaaaccctaatcttggagttgtgagctggttaacattgccgatatatggtctggattttgggtgggggaaggagatttatatgggtccaggaactcatgattttgatggggattcattgattcttccaagttccgatggtgatggttctgtggttgttgcattatgtcttcaagtggctcatatggatgctttcaagaagcacttctatgaggattgccttcaagctagtggctcatatttaacatga

Protein Analysis

472

Amino Acids

52.27

Weight (kDa)

5.97

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19070
fragaria_vesca FvH4_5g22390
malus_domestica MD16G1253400.v1.1
prunus_persica Prupe.1G079800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0210141
rosa_laevigata RLG00000003061
rosa_multiflora Rmu_sc0025548.1_g000002
rosa_roxburghii Rroxscaffold_3G00248590
rosa_rugosa Rorug07G0118800
rosa_samantha Rh7AG252300 Rh7BG247200 Rh7CG269300 Rh7DG259600
rosa_wichuraiana Rw7G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 544
AciI CCGC 5 cut(s) 226, 246, 250, 517, 644
AclWI GGATC 2 cut(s) 90, 567
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 4 cut(s) 546, 675, 799, 1028
AfiI CCNNNNNNNGG 9 cut(s) 142, 199, 221, 526, 594, 655, 1169, 1184, 1217
AflIII ACRYGT 2 cut(s) 821, 1077
AjnI CCWGG 1 cut(s) 1258
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 5 cut(s) 259, 730, 1006, 1197, 1397
AluI AGCT 5 cut(s) 259, 730, 1006, 1197, 1397
Alw21I GWGCWC 2 cut(s) 261, 493
Alw26I GTCTC 1 cut(s) 824
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 2 cut(s) 90, 567
Ama87I CYCGRG 2 cut(s) 254, 731
AoxI GGCC 5 cut(s) 223, 247, 481, 513, 1160
ApaI GGGCCC 1 cut(s) 517
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 5 cut(s) 21, 591, 602, 889, 1031
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 979, 1011
Asp700I GAANNNNTTC 1 cut(s) 1373
Asp718I GGTACC 1 cut(s) 544
AspS9I GGNCC 5 cut(s) 482, 513, 514, 1160, 1256
AsuHPI GGTGA 6 cut(s) 19, 333, 338, 448, 542, 1322
AvaI CYCGRG 2 cut(s) 254, 731
AvaII GGWCC 1 cut(s) 1256
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 2 cut(s) 493, 517
BanI GGYRCC 1 cut(s) 544
BanII GRGCYC 2 cut(s) 261, 517
BbsI GAAGAC 2 cut(s) 324, 1331
Bbv12I GWGCWC 2 cut(s) 261, 493
BbvI GCAGC 5 cut(s) 8, 603, 614, 901, 1018
BccI CCATC 6 cut(s) 104, 122, 346, 1271, 1301, 1307
BceAI ACGGC 3 cut(s) 496, 632, 912
BcgI CGANNNNNNTGC 4 cut(s) 251, 285, 965, 999
BciT130I CCWGG 1 cut(s) 1260
BcoDI GTCTC 1 cut(s) 824
BfaI CTAG 3 cut(s) 423, 525, 1398
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 9 cut(s) 22, 226, 247, 250, 592, 603, 644, 890, 1032
BlsI GCNGC 9 cut(s) 23, 227, 248, 251, 593, 604, 645, 891, 1033
BmcAI AGTACT 1 cut(s) 799
Bme1390I CCNGG 1 cut(s) 1260
Bme18I GGWCC 1 cut(s) 1256
BmeT110I CYCGRG 2 cut(s) 254, 731
BmgT120I GGNCC 5 cut(s) 482, 513, 514, 1160, 1256
BmiI GGNNCC 6 cut(s) 61, 94, 515, 546, 875, 1257
BmrFI CCNGG 1 cut(s) 1260
BmrI ACTGGG 2 cut(s) 151, 665
BmsI GCATC 1 cut(s) 1348
BmuI ACTGGG 2 cut(s) 151, 665
BpiI GAAGAC 2 cut(s) 324, 1331
BplI GAGNNNNNCTC 2 cut(s) 290, 322
Bpu10I CCTNAGC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 725
BsaAI YACGTR 2 cut(s) 923, 1078
BsaJI CCNNGG 4 cut(s) 273, 366, 614, 1156
BsaWI WCCGGW 1 cut(s) 1111
BsaXI ACNNNNNCTCC 3 cut(s) 26, 897, 927
Bsc4I CCNNNNNNNGG 9 cut(s) 142, 199, 221, 526, 594, 655, 1169, 1184, 1217
Bse1I ACTGG 2 cut(s) 146, 660
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 3 cut(s) 274, 941, 1205
BseBI CCWGG 1 cut(s) 1260
BseDI CCNNGG 4 cut(s) 273, 366, 614, 1156
BseGI GGATG 1 cut(s) 1363
BseLI CCNNNNNNNGG 9 cut(s) 142, 199, 221, 526, 594, 655, 1169, 1184, 1217
BseMI GCAATG 3 cut(s) 274, 941, 1205
BseMII CTCAG 2 cut(s) 498, 962
BseNI ACTGG 2 cut(s) 146, 660
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 2 cut(s) 493, 517
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 5 cut(s) 8, 603, 614, 901, 1018
Bsh1285I CGRYCG 2 cut(s) 250, 1056
BshFI GGCC 5 cut(s) 225, 249, 483, 515, 1162
BshNI GGYRCC 1 cut(s) 544
BsiEI CGRYCG 2 cut(s) 250, 1056
BsiHKAI GWGCWC 2 cut(s) 261, 493
BsiHKCI CYCGRG 2 cut(s) 254, 731
BsiSI CCGG 2 cut(s) 595, 1112
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 9 cut(s) 142, 199, 221, 526, 594, 655, 1169, 1184, 1217
BsmAI GTCTC 1 cut(s) 824
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 5 cut(s) 225, 249, 483, 515, 1162
BsoBI CYCGRG 2 cut(s) 254, 731
Bsp120I GGGCCC 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 261, 493, 517
Bsp143I GATC 4 cut(s) 82, 559, 724, 1053
Bsp19I CCATGG 2 cut(s) 273, 366
BspACI CCGC 5 cut(s) 226, 246, 250, 517, 644
BspANI GGCC 5 cut(s) 225, 249, 483, 515, 1162
BspCNI CTCAG 2 cut(s) 499, 961
BspHI TCATGA 2 cut(s) 391, 1267
BspLI GGNNCC 6 cut(s) 61, 94, 515, 546, 875, 1257
BspPI GGATC 2 cut(s) 90, 567
BspT107I GGYRCC 1 cut(s) 544
BsrDI GCAATG 3 cut(s) 274, 941, 1205
BsrI ACTGG 2 cut(s) 146, 660
BssECI CCNNGG 4 cut(s) 273, 366, 614, 1156
BssMI GATC 4 cut(s) 82, 559, 724, 1053
BssT1I CCWWGG 3 cut(s) 273, 366, 1156
Bst2UI CCWGG 1 cut(s) 1260
Bst4CI ACNGT 1 cut(s) 700
BstBAI YACGTR 2 cut(s) 923, 1078
BstC8I GCNNGC 4 cut(s) 223, 230, 517, 862
BstDEI CTNAG 5 cut(s) 217, 449, 507, 710, 948
BstDSI CCRYGG 3 cut(s) 273, 366, 614
BstF5I GGATG 1 cut(s) 1363
BstKTI GATC 4 cut(s) 85, 562, 727, 1056
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 4 cut(s) 82, 559, 724, 1053
BstMCI CGRYCG 2 cut(s) 250, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 521, 866
BstNI CCWGG 1 cut(s) 1260
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 1258
BstSFI CTRYAG 1 cut(s) 376
BstSLI GKGCMC 2 cut(s) 493, 517
BstV1I GCAGC 5 cut(s) 8, 603, 614, 901, 1018
BstV2I GAAGAC 2 cut(s) 324, 1331
BstZI CGGCCG 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 5 cut(s) 225, 249, 483, 515, 1162
BtgI CCRYGG 3 cut(s) 273, 366, 614
BtsCI GGATG 1 cut(s) 1363
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 36, 696
Cac8I GCNNGC 4 cut(s) 223, 230, 517, 862
CciI TCATGA 2 cut(s) 391, 1267
CciNI GCGGCCGC 1 cut(s) 247
Cfr13I GGNCC 5 cut(s) 482, 513, 514, 1160, 1256
Csp6I GTAC 4 cut(s) 545, 674, 798, 1027
CspCI CAANNNNNGTGG 4 cut(s) 418, 453, 537, 572
CviQI GTAC 4 cut(s) 545, 674, 798, 1027
DdeI CTNAG 5 cut(s) 217, 449, 507, 710, 948
DpnI GATC 4 cut(s) 84, 561, 726, 1055
DpnII GATC 4 cut(s) 82, 559, 724, 1053
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 259
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 3 cut(s) 273, 366, 1156
Eco24I GRGCYC 2 cut(s) 261, 517
Eco47I GGWCC 1 cut(s) 1256
Eco52I CGGCCG 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 2 cut(s) 254, 731
EcoICRI GAGCTC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 1160
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 1258
EcoT14I CCWWGG 3 cut(s) 273, 366, 1156
EcoT38I GRGCYC 2 cut(s) 261, 517
ErhI CCWWGG 3 cut(s) 273, 366, 1156
FalI AAGNNNNNCTT 2 cut(s) 1358, 1390
FaqI GGGAC 1 cut(s) 347
FauI CCCGC 1 cut(s) 524
FauNDI CATATG 1 cut(s) 1353
Fnu4HI GCNGC 9 cut(s) 22, 226, 247, 250, 592, 603, 644, 890, 1032
FokI GGATG 1 cut(s) 1370
FriOI GRGCYC 2 cut(s) 261, 517
Fsp4HI GCNGC 9 cut(s) 22, 226, 247, 250, 592, 603, 644, 890, 1032
FspBI CTAG 3 cut(s) 423, 525, 1398
GluI GCNGC 9 cut(s) 22, 226, 247, 250, 592, 603, 644, 890, 1032
HaeIII GGCC 5 cut(s) 225, 249, 483, 515, 1162
HapII CCGG 2 cut(s) 595, 1112
HincII GTYRAC 4 cut(s) 373, 478, 916, 1203
HindII GTYRAC 4 cut(s) 373, 478, 916, 1203
HpaI GTTAAC 1 cut(s) 1203
HpaII CCGG 2 cut(s) 595, 1112
HphI GGTGA 6 cut(s) 19, 333, 338, 448, 542, 1322
Hpy166II GTNNAC 5 cut(s) 373, 478, 491, 916, 1203
Hpy188I TCNGA 7 cut(s) 76, 304, 508, 631, 667, 962, 1306
Hpy188III TCNNGA 8 cut(s) 385, 392, 733, 1057, 1130, 1223, 1268, 1366
Hpy8I GTNNAC 5 cut(s) 373, 478, 491, 916, 1203
Hpy99I CGWCG 1 cut(s) 991
HpyAV CCTTC 6 cut(s) 217, 982, 1054, 1145, 1234, 1400
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4IV ACGT 5 cut(s) 159, 672, 823, 922, 1077
HpyCH4V TGCA 8 cut(s) 197, 267, 491, 574, 864, 934, 1088, 1331
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 866
HpyF3I CTNAG 5 cut(s) 217, 449, 507, 710, 948
HpySE526I ACGT 5 cut(s) 159, 672, 823, 922, 1077
KpnI GGTACC 1 cut(s) 548
KspAI GTTAAC 1 cut(s) 1203
Kzo9I GATC 4 cut(s) 82, 559, 724, 1053
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 5 cut(s) 8, 603, 614, 901, 1018
LweI GCATC 1 cut(s) 1348
MaeI CTAG 3 cut(s) 423, 525, 1398
MaeII ACGT 5 cut(s) 159, 672, 823, 922, 1077
MaeIII GTNAC 6 cut(s) 145, 326, 761, 815, 824, 1151
MalI GATC 4 cut(s) 84, 561, 726, 1055
MboI GATC 4 cut(s) 82, 559, 724, 1053
MboII GAAGA 5 cut(s) 329, 700, 1114, 1286, 1331
MfeI CAATTG 2 cut(s) 416, 1089
MhlI GDGCHC 3 cut(s) 261, 493, 517
MluCI AATT 5 cut(s) 284, 416, 781, 834, 1089
MlyI GAGTC 6 cut(s) 176, 299, 308, 911, 1000, 1114
MmeI TCCRAC 3 cut(s) 70, 215, 327
MroXI GAANNNNTTC 1 cut(s) 1373
MseI TTAA 4 cut(s) 65, 177, 1202, 1412
MslI CAYNNNNRTG 2 cut(s) 1356, 1377
MspI CCGG 2 cut(s) 595, 1112
MspR9I CCNGG 1 cut(s) 1260
MunI CAATTG 2 cut(s) 416, 1089
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 1 cut(s) 1260
MwoI GCNNNNNNNGC 2 cut(s) 521, 866
NcoI CCATGG 2 cut(s) 273, 366
NdeI CATATG 1 cut(s) 1353
NdeII GATC 4 cut(s) 82, 559, 724, 1053
NlaIV GGNNCC 6 cut(s) 61, 94, 515, 546, 875, 1257
NmeAIII GCCGAG 2 cut(s) 322, 910
NmuCI GTSAC 3 cut(s) 145, 326, 1151
NotI GCGGCCGC 1 cut(s) 247
NspI RCATGY 1 cut(s) 470
PaeR7I CTCGAG 2 cut(s) 254, 731
PagI TCATGA 2 cut(s) 391, 1267
PcsI WCGNNNNNNNCGW 1 cut(s) 972
PctI GAATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 1373
PfeI GAWTC 4 cut(s) 388, 584, 1283, 1291
PfoI TCCNGGA 1 cut(s) 1258
PkrI GCNGC 9 cut(s) 23, 227, 248, 251, 593, 604, 645, 891, 1033
Ple19I CGATCG 1 cut(s) 1056
PleI GAGTC 6 cut(s) 176, 299, 307, 911, 999, 1114
PpsI GAGTC 6 cut(s) 176, 299, 307, 911, 999, 1114
Ppu21I YACGTR 2 cut(s) 923, 1078
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 1258
PspGI CCWGG 1 cut(s) 1258
PspN4I GGNNCC 6 cut(s) 61, 94, 515, 546, 875, 1257
PspOMI GGGCCC 1 cut(s) 513
PspPI GGNCC 5 cut(s) 482, 513, 514, 1160, 1256
PspXI VCTCGAGB 1 cut(s) 254
PvuI CGATCG 1 cut(s) 1056
RsaI GTAC 4 cut(s) 546, 675, 799, 1028
RsaNI GTAC 4 cut(s) 545, 674, 798, 1027
RseI CAYNNNNRTG 2 cut(s) 1356, 1377
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 4 cut(s) 65, 177, 1202, 1412
SatI GCNGC 9 cut(s) 22, 226, 247, 250, 592, 603, 644, 890, 1032
Sau3AI GATC 4 cut(s) 82, 559, 724, 1053
Sau96I GGNCC 5 cut(s) 482, 513, 514, 1160, 1256
ScaI AGTACT 1 cut(s) 799
SchI GAGTC 6 cut(s) 176, 299, 308, 911, 1000, 1114
ScrFI CCNGG 1 cut(s) 1260
SduI GDGCHC 3 cut(s) 261, 493, 517
SfaNI GCATC 1 cut(s) 1348
SfcI CTRYAG 1 cut(s) 376
Sfr274I CTCGAG 2 cut(s) 254, 731
SinI GGWCC 1 cut(s) 1256
SlaI CTCGAG 2 cut(s) 254, 731
SmiMI CAYNNNNRTG 2 cut(s) 1356, 1377
SmlI CTYRAG 3 cut(s) 254, 731, 740
SmoI CTYRAG 3 cut(s) 254, 731, 740
Sse9I AATT 5 cut(s) 284, 416, 781, 834, 1089
SsiI CCGC 5 cut(s) 226, 246, 250, 517, 644
SspMI CTAG 3 cut(s) 423, 525, 1398
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 1258
StyI CCWWGG 3 cut(s) 273, 366, 1156
TaaI ACNGT 1 cut(s) 700
TaiI ACGT 5 cut(s) 162, 675, 826, 925, 1080
TasI AATT 5 cut(s) 284, 416, 781, 834, 1089
TatI WGTACW 1 cut(s) 797
TauI GCSGC 4 cut(s) 228, 249, 252, 646
TfiI GAWTC 4 cut(s) 388, 584, 1283, 1291
Tru1I TTAA 4 cut(s) 65, 177, 1202, 1412
Tru9I TTAA 4 cut(s) 65, 177, 1202, 1412
TscAI CASTG 2 cut(s) 36, 703
TseFI GTSAC 3 cut(s) 145, 326, 1151
TseI GCWGC 5 cut(s) 21, 591, 602, 889, 1031
Tsp45I GTSAC 3 cut(s) 145, 326, 1151
TspDTI ATGAA 6 cut(s) 277, 380, 408, 490, 1127, 1275
TspRI CASTG 2 cut(s) 36, 703
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 1256
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 470
XhoI CTCGAG 2 cut(s) 254, 731
XmnI GAANNNNTTC 1 cut(s) 1373
XspI CTAG 3 cut(s) 423, 525, 1398
ZrmI AGTACT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.