Rorug07G0118800

Spermidine hydroxycinnamoyl

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
9336746 .. 9337014
269 bp
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UTR
Exon/CDS
Intron
Rorug07G0118800.1

Sequence Viewer

Length: 231 bp
ATGAGAACCCATGACATTGTATTTGCCAACCGGCCAAAACCACAACAGAAGACATTTTGTATTATGGTTGCATGGACATTGGTTTTGCACCTTACGGTGATTACTGAAGACAGGCGAGTTCTCACATTTCAGTTTGTGAGGGAAGAAGATGTTGCAATATTGATCAGTAAGATAAGAAAAGCAAGGCTGCCGCCGGCTGGGGCCTATGTAAATCTAAGTGAGATGTTGTAG

Protein Analysis

76

Amino Acids

8.84

Weight (kDa)

9.85

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19070
fragaria_vesca FvH4_5g22390
malus_domestica MD16G1253400.v1.1
prunus_persica Prupe.1G079800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0210141
rosa_laevigata RLG00000003061
rosa_multiflora Rmu_sc0025548.1_g000002
rosa_roxburghii Rroxscaffold_3G00248590
rosa_rugosa Rorug07G0118800
rosa_samantha Rh7AG252300 Rh7BG247200 Rh7CG269300 Rh7DG259600
rosa_wichuraiana Rw7G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 197
AoxI GGCC 2 cut(s) 32, 201
ApeKI GCWGC 1 cut(s) 187
ArsI GACNNNNNNTTYG 3 cut(s) 37, 67, 99
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 109
BbsI GAAGAC 2 cut(s) 56, 114
BbvI GCAGC 1 cut(s) 174
BclI TGATCA 1 cut(s) 162
BisI GCNGC 2 cut(s) 188, 191
BlsI GCNGC 2 cut(s) 189, 192
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 202
BpiI GAAGAC 2 cut(s) 56, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 2 cut(s) 30, 193
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 2 cut(s) 34, 203
BsiSI CCGG 2 cut(s) 31, 194
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 2 cut(s) 34, 203
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 34, 203
BspLI GGNNCC 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 30, 193
BssAI RCCGGY 2 cut(s) 30, 193
BssMI GATC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 215
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 2 cut(s) 56, 114
BsuRI GGCC 2 cut(s) 34, 203
Cac8I GCNNGC 1 cut(s) 195
Cfr10I RCCGGY 2 cut(s) 30, 193
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 2 cut(s) 11, 72
CviJI RGCY 4 cut(s) 34, 187, 197, 203
CviKI_1 RGCY 4 cut(s) 34, 187, 197, 203
DdeI CTNAG 1 cut(s) 215
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 201
FaeI CATG 2 cut(s) 14, 75
FaiI YATR 4 cut(s) 12, 65, 73, 207
FatI CATG 2 cut(s) 10, 71
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 188, 191
Fsp4HI GCNGC 2 cut(s) 188, 191
GluI GCNGC 2 cut(s) 188, 191
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 34, 203
HapII CCGG 2 cut(s) 31, 194
Hin1II CATG 2 cut(s) 14, 75
HpaII CCGG 2 cut(s) 31, 194
HphI GGTGA 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 71, 88, 155
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 2 cut(s) 14, 75
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 44, 97, 183, 207
Lsp1109I GCAGC 1 cut(s) 174
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 4 cut(s) 61, 119, 155, 158
MnlI CCTC 1 cut(s) 132
MroNI GCCGGC 1 cut(s) 193
MspI CCGG 2 cut(s) 31, 194
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 1 cut(s) 162
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 2 cut(s) 14, 75
NlaIV GGNNCC 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 189, 192
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 201
SatI GCNGC 2 cut(s) 188, 191
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 201
SetI ASST 1 cut(s) 93
SgeI CNNG 8 cut(s) 23, 43, 84, 124, 128, 195, 206, 210
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 159
TaaI ACNGT 1 cut(s) 97
TauI GCSGC 1 cut(s) 193
TseI GCWGC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.