Rh7BG247200

Spermidine hydroxycinnamoyl

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
22095511 .. 22096920
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG247200.1

Sequence Viewer

Length: 1410 bp
ATGGTGGTGAAGTTCAAAGGCTGCGAAGCAGTGAAACCCTCTAAACCCACATGGAAAGGTTCCTTAACTCTATCGGAATGGGATCAAGTTGGAACCATTACTCATATTCCCACCATCTACTTCTACAAATCAAACCCTAACTGGATCACACCAGATGACGTAATCCCCAACACACTTAAAGACTCATTAGCCCGTGCATTGGTTTCCTTCTACCCCTTAGCAGGCCGCCTGCGTTGGATTGGCGGCGGTCGCCTCGAGCTCGACTGCAATGCCATGGGGGTCCAATTCATCGAAGCCGAGTCCGACTCCAAACTCGAAGACTTTGGTGACTTCTCCCCGTCACCGGAGTATAACTATCTTGTCCCCATGGTTGACTATAGCCTCCCGATTCATGAACTTCCCTTGTTGCTTGTTCAATTGACTAGGTTCAAGTGTGCCGGTGTTAGTCTTAGCCTCACCATTTCACATGCTGTTGTTGACGGCCCAAGTGCACTACATTTCATGTCTGAGTGGGCTCGCCTTGCTAGGGGTGAGCCGTTGGAGGTGACGCCATTTTTGGATAGAAAAGCCATGCAAGGAGGAGATTTCAGCAGCCGGGCGGCAGCAAAACCTCCACGGCTCGACCACTCAGAGTTTGACCAACCGCCCCTTTTACTGGGGCAATCAGATAATGTACAAGAAAGGAAGAAGAAAACCACTGTTGCCATGCTAAGACTTAGTAAAGATCAGCTCGAGAAGCTCAAGTGTAAGGCTAATGATAGTTACAACCTTTACAACAACAATTCCTCTGCTGGCAGTACTACTAAACGTGGCGGTTACACACGTTACGAGACAGTTTCGGGGCATATCTGGAGATGTGCTTGCAAGGCAAGGAACCACAAAGCCGAGCAGCCAACGGCATTGGGAGTTTGCGTTGACTCACGTAGTCGAATGCAACCCCCATTGCCTCAGGGGTACTTCGGAAACGCAACCTTCGATGTGATTGCGACGAGTCATTCGGGGGAGCTGGTTTCAAAGCCATTGGGGTATGCTGCGAGTAGAATAAGGGAGGCGATCGAGAAGGTGTCGAATGATTACGTGTTGTCTGCAATTGAAAACTTGAAGAACCAACCGGATTTGACTCGGTTTCAAGACCTTCATGCTTTGGGAAGTGACCAAGGGCCTTTCTATGGAAACCCTAATCTTGGAGTAGTGAGCTGGTTAACATTGCCGATATATGGCCTGGATTTTGGGTGGGGGAAGGAGATTTATATGGGTCCAGGAACTCATGATTTTGATGGGGATTCATTGATTCTTCCAAGCTCCGATGGAGATGGATCTGTGGTTGTTGCATTATGTCTTCAAGTGGCTCATATGGATGCTTTCAAGAAGCACTTCTATGAGGATTGCCTTCAAGTGGCTCATATTTAA

Protein Analysis

469

Amino Acids

51.91

Weight (kDa)

6.24

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 461 1.4e-129 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19070
fragaria_vesca FvH4_5g22390
malus_domestica MD16G1253400.v1.1
prunus_persica Prupe.1G079800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0210141
rosa_laevigata RLG00000003061
rosa_multiflora Rmu_sc0025548.1_g000002
rosa_roxburghii Rroxscaffold_3G00248590
rosa_rugosa Rorug07G0118800
rosa_samantha Rh7AG252300 Rh7BG247200 Rh7CG269300 Rh7DG259600
rosa_wichuraiana Rw7G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 226, 243, 246, 599, 644, 813
AclWI GGATC 3 cut(s) 90, 152, 1324
AcyI GRCGYC 1 cut(s) 548
AfaI GTAC 3 cut(s) 675, 799, 956
AfiI CCNNNNNNNGG 9 cut(s) 199, 221, 343, 526, 655, 1169, 1184, 1217, 1396
AflIII ACRYGT 2 cut(s) 821, 1077
AjnI CCWGG 2 cut(s) 1221, 1258
AluBI AGCT 6 cut(s) 259, 730, 739, 1006, 1197, 1302
AluI AGCT 6 cut(s) 259, 730, 739, 1006, 1197, 1302
Alw21I GWGCWC 2 cut(s) 261, 493
Alw26I GTCTC 1 cut(s) 824
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 3 cut(s) 90, 152, 1324
Ama87I CYCGRG 2 cut(s) 254, 731
AoxI GGCC 4 cut(s) 223, 481, 1160, 1219
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 5 cut(s) 21, 591, 602, 889, 1031
ArsI GACNNNNNNTTYG 4 cut(s) 538, 570, 979, 1011
Asp700I GAANNNNTTC 1 cut(s) 1373
AspS9I GGNCC 4 cut(s) 280, 482, 1160, 1256
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 6 cut(s) 19, 333, 338, 448, 542, 556
AvaI CYCGRG 2 cut(s) 254, 731
AvaII GGWCC 2 cut(s) 280, 1256
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 493
BanII GRGCYC 2 cut(s) 261, 517
BbsI GAAGAC 2 cut(s) 324, 1331
Bbv12I GWGCWC 2 cut(s) 261, 493
BbvI GCAGC 5 cut(s) 8, 603, 614, 901, 1018
BccI CCATC 4 cut(s) 122, 1271, 1301, 1307
BceAI ACGGC 4 cut(s) 496, 520, 632, 912
BcgI CGANNNNNNTGC 4 cut(s) 251, 285, 965, 999
BciT130I CCWGG 2 cut(s) 1223, 1260
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 824
BfaI CTAG 2 cut(s) 423, 525
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 8 cut(s) 22, 226, 244, 592, 600, 603, 890, 1032
BlsI GCNGC 8 cut(s) 23, 227, 245, 593, 601, 604, 891, 1033
BmcAI AGTACT 1 cut(s) 799
Bme1390I CCNGG 3 cut(s) 596, 1223, 1260
Bme18I GGWCC 2 cut(s) 280, 1256
BmeT110I CYCGRG 2 cut(s) 254, 731
BmgT120I GGNCC 4 cut(s) 280, 482, 1160, 1256
BmiI GGNNCC 5 cut(s) 61, 94, 281, 875, 1257
BmrFI CCNGG 3 cut(s) 596, 1223, 1260
BmrI ACTGGG 1 cut(s) 665
BmsI GCATC 1 cut(s) 1348
BmuI ACTGGG 1 cut(s) 665
BpiI GAAGAC 2 cut(s) 324, 1331
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 871
Bpu10I CCTNAGC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 596
BsaAI YACGTR 2 cut(s) 923, 1078
BsaHI GRCGYC 1 cut(s) 548
BsaJI CCNNGG 4 cut(s) 273, 366, 614, 1156
BsaWI WCCGGW 2 cut(s) 343, 1111
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 9 cut(s) 199, 221, 343, 526, 655, 1169, 1184, 1217, 1396
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 2 cut(s) 146, 660
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 3 cut(s) 274, 941, 1205
BseBI CCWGG 2 cut(s) 1223, 1260
BseDI CCNNGG 4 cut(s) 273, 366, 614, 1156
BseGI GGATG 1 cut(s) 1363
BseLI CCNNNNNNNGG 9 cut(s) 199, 221, 343, 526, 655, 1169, 1184, 1217, 1396
BseMI GCAATG 3 cut(s) 274, 941, 1205
BseMII CTCAG 3 cut(s) 498, 642, 962
BseNI ACTGG 2 cut(s) 146, 660
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 5 cut(s) 8, 603, 614, 901, 1018
Bsh1285I CGRYCG 2 cut(s) 250, 1056
BshFI GGCC 4 cut(s) 225, 483, 1162, 1221
BsiEI CGRYCG 2 cut(s) 250, 1056
BsiHKAI GWGCWC 2 cut(s) 261, 493
BsiHKCI CYCGRG 2 cut(s) 254, 731
BsiSI CCGG 4 cut(s) 344, 438, 595, 1112
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 9 cut(s) 199, 221, 343, 526, 655, 1169, 1184, 1217, 1396
BsmAI GTCTC 1 cut(s) 824
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 4 cut(s) 225, 483, 1162, 1221
BsoBI CYCGRG 2 cut(s) 254, 731
Bsp1286I GDGCHC 3 cut(s) 261, 493, 517
Bsp1407I TGTACA 1 cut(s) 673
Bsp143I GATC 5 cut(s) 82, 144, 724, 1053, 1316
Bsp19I CCATGG 2 cut(s) 273, 366
BspACI CCGC 6 cut(s) 226, 243, 246, 599, 644, 813
BspANI GGCC 4 cut(s) 225, 483, 1162, 1221
BspCNI CTCAG 3 cut(s) 499, 641, 961
BspHI TCATGA 2 cut(s) 391, 1267
BspLI GGNNCC 5 cut(s) 61, 94, 281, 875, 1257
BspPI GGATC 3 cut(s) 90, 152, 1324
BsrDI GCAATG 3 cut(s) 274, 941, 1205
BsrFI RCCGGY 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 673
BsrI ACTGG 2 cut(s) 146, 660
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 4 cut(s) 273, 366, 614, 1156
BssMI GATC 5 cut(s) 82, 144, 724, 1053, 1316
BssNI GRCGYC 1 cut(s) 548
BssT1I CCWWGG 3 cut(s) 273, 366, 1156
Bst2UI CCWGG 2 cut(s) 1223, 1260
Bst4CI ACNGT 2 cut(s) 700, 835
BstACI GRCGYC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 673
BstBAI YACGTR 2 cut(s) 923, 1078
BstC8I GCNNGC 5 cut(s) 223, 230, 517, 793, 862
BstDEI CTNAG 7 cut(s) 217, 449, 507, 628, 710, 716, 948
BstDSI CCRYGG 3 cut(s) 273, 366, 614
BstF5I GGATG 1 cut(s) 1363
BstKTI GATC 5 cut(s) 85, 147, 727, 1056, 1319
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 5 cut(s) 82, 144, 724, 1053, 1316
BstMCI CGRYCG 2 cut(s) 250, 1056
BstMWI GCNNNNNNNGC 4 cut(s) 249, 521, 736, 866
BstNI CCWGG 2 cut(s) 1223, 1260
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 594, 1221, 1258
BstSFI CTRYAG 1 cut(s) 376
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 5 cut(s) 8, 603, 614, 901, 1018
BstV2I GAAGAC 2 cut(s) 324, 1331
BstX2I RGATCY 1 cut(s) 1316
BstYI RGATCY 1 cut(s) 1316
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 4 cut(s) 225, 483, 1162, 1221
BtgI CCRYGG 3 cut(s) 273, 366, 614
BtsCI GGATG 1 cut(s) 1363
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 36, 696
Cac8I GCNNGC 5 cut(s) 223, 230, 517, 793, 862
CciI TCATGA 2 cut(s) 391, 1267
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 4 cut(s) 280, 482, 1160, 1256
CseI GACGC 1 cut(s) 556
Csp6I GTAC 3 cut(s) 674, 798, 955
CviQI GTAC 3 cut(s) 674, 798, 955
DdeI CTNAG 7 cut(s) 217, 449, 507, 628, 710, 716, 948
DpnI GATC 5 cut(s) 84, 146, 726, 1055, 1318
DpnII GATC 5 cut(s) 82, 144, 724, 1053, 1316
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 273, 366, 1156
Eco24I GRGCYC 2 cut(s) 261, 517
Eco47I GGWCC 2 cut(s) 280, 1256
Eco53kI GAGCTC 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 2 cut(s) 254, 731
EcoICRI GAGCTC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 1160
EcoRII CCWGG 2 cut(s) 1221, 1258
EcoT14I CCWWGG 3 cut(s) 273, 366, 1156
EcoT38I GRGCYC 2 cut(s) 261, 517
ErhI CCWWGG 3 cut(s) 273, 366, 1156
FalI AAGNNNNNCTT 2 cut(s) 1358, 1390
FaqI GGGAC 1 cut(s) 347
FauNDI CATATG 1 cut(s) 1353
Fnu4HI GCNGC 8 cut(s) 22, 226, 244, 592, 600, 603, 890, 1032
FokI GGATG 1 cut(s) 1370
FriOI GRGCYC 2 cut(s) 261, 517
Fsp4HI GCNGC 8 cut(s) 22, 226, 244, 592, 600, 603, 890, 1032
FspBI CTAG 2 cut(s) 423, 525
GluI GCNGC 8 cut(s) 22, 226, 244, 592, 600, 603, 890, 1032
GsuI CTGGAG 1 cut(s) 871
HaeIII GGCC 4 cut(s) 225, 483, 1162, 1221
HapII CCGG 4 cut(s) 344, 438, 595, 1112
HgaI GACGC 1 cut(s) 556
Hin1I GRCGYC 1 cut(s) 548
HincII GTYRAC 4 cut(s) 373, 478, 916, 1203
HindII GTYRAC 4 cut(s) 373, 478, 916, 1203
HinfI GANTC 9 cut(s) 182, 299, 305, 388, 917, 991, 1120, 1283, 1291
HpaI GTTAAC 1 cut(s) 1203
HpaII CCGG 4 cut(s) 344, 438, 595, 1112
HphI GGTGA 6 cut(s) 19, 333, 338, 448, 542, 556
Hpy166II GTNNAC 5 cut(s) 373, 478, 491, 916, 1203
Hpy188I TCNGA 7 cut(s) 76, 304, 508, 631, 667, 962, 1306
Hpy188III TCNNGA 8 cut(s) 385, 392, 733, 850, 1057, 1130, 1268, 1366
Hpy8I GTNNAC 5 cut(s) 373, 478, 491, 916, 1203
Hpy99I CGWCG 1 cut(s) 991
HpyAV CCTTC 6 cut(s) 217, 982, 1054, 1145, 1234, 1400
HpyCH4III ACNGT 2 cut(s) 700, 835
HpyCH4IV ACGT 5 cut(s) 159, 808, 823, 922, 1077
HpyCH4V TGCA 8 cut(s) 197, 267, 491, 574, 864, 934, 1088, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 521, 736, 866
HpyF3I CTNAG 7 cut(s) 217, 449, 507, 628, 710, 716, 948
HpySE526I ACGT 5 cut(s) 159, 808, 823, 922, 1077
Hsp92I GRCGYC 1 cut(s) 548
KspAI GTTAAC 1 cut(s) 1203
Kzo9I GATC 5 cut(s) 82, 144, 724, 1053, 1316
LmnI GCTCC 2 cut(s) 1003, 1307
Lsp1109I GCAGC 5 cut(s) 8, 603, 614, 901, 1018
LweI GCATC 1 cut(s) 1348
MaeI CTAG 2 cut(s) 423, 525
MaeII ACGT 5 cut(s) 159, 808, 823, 922, 1077
MaeIII GTNAC 7 cut(s) 326, 339, 544, 761, 815, 824, 1151
MalI GATC 5 cut(s) 84, 146, 726, 1055, 1318
MboI GATC 5 cut(s) 82, 144, 724, 1053, 1316
MboII GAAGA 6 cut(s) 329, 697, 700, 1114, 1286, 1331
MfeI CAATTG 2 cut(s) 416, 1089
MflI RGATCY 1 cut(s) 1316
MhlI GDGCHC 3 cut(s) 261, 493, 517
MluCI AATT 4 cut(s) 284, 416, 781, 1089
MlyI GAGTC 6 cut(s) 176, 299, 308, 911, 1000, 1114
MmeI TCCRAC 4 cut(s) 70, 215, 327, 519
MroXI GAANNNNTTC 1 cut(s) 1373
MseI TTAA 4 cut(s) 65, 177, 1202, 1408
MslI CAYNNNNRTG 2 cut(s) 1356, 1377
MspI CCGG 4 cut(s) 344, 438, 595, 1112
MspR9I CCNGG 3 cut(s) 596, 1223, 1260
MunI CAATTG 2 cut(s) 416, 1089
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 2 cut(s) 1223, 1260
MwoI GCNNNNNNNGC 4 cut(s) 249, 521, 736, 866
NciI CCSGG 1 cut(s) 596
NcoI CCATGG 2 cut(s) 273, 366
NdeI CATATG 1 cut(s) 1353
NdeII GATC 5 cut(s) 82, 144, 724, 1053, 1316
NlaIV GGNNCC 5 cut(s) 61, 94, 281, 875, 1257
NmeAIII GCCGAG 2 cut(s) 322, 910
NmuCI GTSAC 4 cut(s) 326, 339, 544, 1151
NspI RCATGY 1 cut(s) 470
PaeR7I CTCGAG 2 cut(s) 254, 731
PagI TCATGA 2 cut(s) 391, 1267
PcsI WCGNNNNNNNCGW 1 cut(s) 972
PctI GAATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 1373
PfeI GAWTC 3 cut(s) 388, 1283, 1291
PfoI TCCNGGA 1 cut(s) 1258
PkrI GCNGC 8 cut(s) 23, 227, 245, 593, 601, 604, 891, 1033
Ple19I CGATCG 1 cut(s) 1056
PleI GAGTC 6 cut(s) 176, 299, 307, 911, 999, 1114
PpsI GAGTC 6 cut(s) 176, 299, 307, 911, 999, 1114
Ppu21I YACGTR 2 cut(s) 923, 1078
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 1221, 1258
PspGI CCWGG 2 cut(s) 1221, 1258
PspN4I GGNNCC 5 cut(s) 61, 94, 281, 875, 1257
PspPI GGNCC 4 cut(s) 280, 482, 1160, 1256
PspXI VCTCGAGB 1 cut(s) 254
PsuI RGATCY 1 cut(s) 1316
PvuI CGATCG 1 cut(s) 1056
RsaI GTAC 3 cut(s) 675, 799, 956
RsaNI GTAC 3 cut(s) 674, 798, 955
RseI CAYNNNNRTG 2 cut(s) 1356, 1377
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 4 cut(s) 65, 177, 1202, 1408
SatI GCNGC 8 cut(s) 22, 226, 244, 592, 600, 603, 890, 1032
Sau3AI GATC 5 cut(s) 82, 144, 724, 1053, 1316
Sau96I GGNCC 4 cut(s) 280, 482, 1160, 1256
ScaI AGTACT 1 cut(s) 799
SchI GAGTC 6 cut(s) 176, 299, 308, 911, 1000, 1114
ScrFI CCNGG 3 cut(s) 596, 1223, 1260
SduI GDGCHC 3 cut(s) 261, 493, 517
SfaNI GCATC 1 cut(s) 1348
SfcI CTRYAG 1 cut(s) 376
Sfr274I CTCGAG 2 cut(s) 254, 731
SinI GGWCC 2 cut(s) 280, 1256
SlaI CTCGAG 2 cut(s) 254, 731
SmiMI CAYNNNNRTG 2 cut(s) 1356, 1377
SmlI CTYRAG 3 cut(s) 254, 731, 740
SmoI CTYRAG 3 cut(s) 254, 731, 740
Sse9I AATT 4 cut(s) 284, 416, 781, 1089
SsiI CCGC 6 cut(s) 226, 243, 246, 599, 644, 813
SspMI CTAG 2 cut(s) 423, 525
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 594, 1221, 1258
StyI CCWWGG 3 cut(s) 273, 366, 1156
TaaI ACNGT 2 cut(s) 700, 835
TaiI ACGT 5 cut(s) 162, 811, 826, 925, 1080
TasI AATT 4 cut(s) 284, 416, 781, 1089
TatI WGTACW 2 cut(s) 673, 797
TauI GCSGC 3 cut(s) 228, 246, 602
TfiI GAWTC 3 cut(s) 388, 1283, 1291
Tru1I TTAA 4 cut(s) 65, 177, 1202, 1408
Tru9I TTAA 4 cut(s) 65, 177, 1202, 1408
TscAI CASTG 2 cut(s) 36, 703
TseFI GTSAC 4 cut(s) 326, 339, 544, 1151
TseI GCWGC 5 cut(s) 21, 591, 602, 889, 1031
Tsp45I GTSAC 4 cut(s) 326, 339, 544, 1151
TspDTI ATGAA 6 cut(s) 277, 380, 408, 490, 1127, 1275
TspRI CASTG 2 cut(s) 36, 703
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 280, 1256
XceI RCATGY 1 cut(s) 470
XhoI CTCGAG 2 cut(s) 254, 731
XmnI GAANNNNTTC 1 cut(s) 1373
XspI CTAG 2 cut(s) 423, 525
ZrmI AGTACT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.