Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0022408

Physical Location & Seq

Genomic Coordinates Reverse (-)

16085623 .. 16086099

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1162600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGAACAGCAAGTCAGTGGTGGCGCTGATCAAGACAATGAAGCCGACCTTTCGCTCTAGCAACGACAACGACAAGGTCACCCTAGCCGTCCATGCCTACTTCTTGGCCTCCGGCTACGACCTCATCACCACTGGTCCCCACGCCTTTTCCCCTGTCGCCCTCAACTCTTCTTTCACAGATGAAGTGCGTATTAAGGGATGGAACGAGCTCGAAGACCAGTACGTATTCGTGTACGTGAACCTGGAAGAGGGTTCGAAGAAGGTCCGGGTCAAGTGCCTTGTGATGGAGGATGAACTGCATGTGTTTTGCGCTCTGGCTGATGGGTCTTCTAAGCATGTCGAATTAGACGTTGGGAATTATGTAGAGGAAACCGGGGGCGGAAATTACTCTAGACAGTTTAAGAATATGGAGTGGCTGGTGAAAATTCTCGACTCTTTGCACCCCTTGATCAAGAGGGCCCATGATCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

159

Amino Acids

17.75

Weight (kDa)

5.84

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	21 - 126	3.5e-13	PI31 proteasome regulator N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022408)

Species	Orthologous Gene IDs
malus_domestica	MD12G1200000.v1.1 MD17G1162600.v1.1
prunus_persica	Prupe.6G304800_v2.0.a1
pyrus_communis	pycom12g18670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	2 cut(s)	224, 236
AfiI	CCNNNNNNNGG	2 cut(s)	250, 286
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	108, 459
ApaI	GGGCCC	1 cut(s)	463
ApoI	RAATTY	1 cut(s)	426
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	28, 314
AspS9I	GGNCC	4 cut(s)	137, 265, 459, 460
AsuC2I	CCSGG	2 cut(s)	269, 376
AsuHPI	GGTGA	3 cut(s)	73, 121, 433
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	137, 265
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	2 cut(s)	213, 463
BbsI	GAAGAC	2 cut(s)	222, 321
Bbv12I	GWGCWC	1 cut(s)	213
BccI	CCATC	3 cut(s)	195, 280, 317
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	3 cut(s)	30, 450, 466
BcnI	CCSGG	2 cut(s)	269, 376
BfaI	CTAG	4 cut(s)	60, 86, 393, 475
BfoI	RGCGCY	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	245, 269, 376
Bme18I	GGWCC	2 cut(s)	137, 265
BmgT120I	GGNCC	4 cut(s)	137, 265, 459, 460
BmiI	GGNNCC	2 cut(s)	139, 461
BmrFI	CCNGG	3 cut(s)	245, 269, 376
BpiI	GAAGAC	2 cut(s)	222, 321
Bpu14I	TTCGAA	1 cut(s)	257
BpuMI	CCSGG	2 cut(s)	269, 376
BsaAI	YACGTR	2 cut(s)	226, 238
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 286
Bse1I	ACTGG	2 cut(s)	139, 220
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	206, 298
BseLI	CCNNNNNNNGG	2 cut(s)	250, 286
BseNI	ACTGG	2 cut(s)	139, 220
BseSI	GKGCMC	1 cut(s)	463
BshFI	GGCC	2 cut(s)	110, 461
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	114, 268, 375
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	250, 286
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	110, 461
Bsp119I	TTCGAA	1 cut(s)	257
Bsp120I	GGGCCC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	213, 463
Bsp143I	GATC	3 cut(s)	30, 450, 466
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	110, 461
BspLI	GGNNCC	2 cut(s)	139, 461
BspT104I	TTCGAA	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	139, 220
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	30, 450, 466
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	2 cut(s)	175, 243
BstBAI	YACGTR	2 cut(s)	226, 238
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	206, 298
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 314
BstKTI	GATC	3 cut(s)	33, 453, 469
BstMBI	GATC	3 cut(s)	30, 450, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	305, 341
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	243, 267, 374
BstSLI	GKGCMC	1 cut(s)	463
BstSNI	TACGTA	1 cut(s)	226
BstV2I	GAAGAC	2 cut(s)	222, 321
BsuRI	GGCC	2 cut(s)	110, 461
BtsCI	GGATG	2 cut(s)	206, 298
BtsIMutI	CAGTG	2 cut(s)	24, 132
CfoI	GCGC	2 cut(s)	28, 314
Cfr13I	GGNCC	4 cut(s)	137, 265, 459, 460
Csp6I	GTAC	2 cut(s)	223, 235
CviAII	CATG	4 cut(s)	95, 302, 338, 464
CviJI	RGCY	9 cut(s)	46, 89, 110, 117, 211, 320, 418, 461, 472
CviKI_1	RGCY	9 cut(s)	46, 89, 110, 117, 211, 320, 418, 461, 472
CviQI	GTAC	2 cut(s)	223, 235
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	3 cut(s)	32, 452, 468
DpnII	GATC	3 cut(s)	30, 450, 466
Eam1104I	CTCTTC	2 cut(s)	175, 243
EarI	CTCTTC	2 cut(s)	175, 243
EciI	GGCGGA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	211
Eco105I	TACGTA	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	213, 463
Eco47I	GGWCC	2 cut(s)	137, 265
Eco53kI	GAGCTC	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	459
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	2 cut(s)	213, 463
FaeI	CATG	4 cut(s)	98, 305, 341, 467
FaiI	YATR	6 cut(s)	96, 303, 339, 363, 410, 465
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	94, 301, 337, 463
FbaI	TGATCA	3 cut(s)	30, 450, 466
FokI	GGATG	2 cut(s)	213, 305
FriOI	GRGCYC	2 cut(s)	213, 463
FspBI	CTAG	4 cut(s)	60, 86, 393, 475
GlaI	GCGC	2 cut(s)	27, 313
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	110, 461
HapII	CCGG	3 cut(s)	114, 268, 375
HhaI	GCGC	2 cut(s)	28, 314
Hin1II	CATG	4 cut(s)	98, 305, 341, 467
Hin6I	GCGC	2 cut(s)	26, 312
HinP1I	GCGC	2 cut(s)	26, 312
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	3 cut(s)	114, 268, 375
HphI	GGTGA	3 cut(s)	73, 121, 433
Hpy166II	GTNNAC	2 cut(s)	235, 241
Hpy188III	TCNNGA	4 cut(s)	34, 393, 431, 454
Hpy8I	GTNNAC	2 cut(s)	235, 241
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	3 cut(s)	225, 237, 351
HpyCH4V	TGCA	2 cut(s)	301, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	3 cut(s)	225, 237, 351
Hsp92II	CATG	4 cut(s)	98, 305, 341, 467
HspAI	GCGC	2 cut(s)	26, 312
Ksp22I	TGATCA	3 cut(s)	30, 450, 466
Kzo9I	GATC	3 cut(s)	30, 450, 466
MaeI	CTAG	4 cut(s)	60, 86, 393, 475
MaeII	ACGT	3 cut(s)	225, 237, 351
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	32, 452, 468
MboI	GATC	3 cut(s)	30, 450, 466
MboII	GAAGA	5 cut(s)	162, 227, 260, 271, 321
MhlI	GDGCHC	2 cut(s)	213, 463
MluCI	AATT	4 cut(s)	344, 358, 385, 426
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	7 cut(s)	121, 134, 173, 244, 283, 361, 450
MseI	TTAA	2 cut(s)	195, 402
MspI	CCGG	3 cut(s)	114, 268, 375
MspR9I	CCNGG	3 cut(s)	245, 269, 376
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	269, 376
NdeII	GATC	3 cut(s)	30, 450, 466
NlaIII	CATG	4 cut(s)	98, 305, 341, 467
NlaIV	GGNNCC	2 cut(s)	139, 461
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	2 cut(s)	305, 341
NspV	TTCGAA	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Ppu21I	YACGTR	2 cut(s)	226, 238
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	139, 461
PspOMI	GGGCCC	1 cut(s)	459
PspPI	GGNCC	4 cut(s)	137, 265, 459, 460
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	224, 236
RsaNI	GTAC	2 cut(s)	223, 235
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	195, 402
Sau3AI	GATC	3 cut(s)	30, 450, 466
Sau96I	GGNCC	4 cut(s)	137, 265, 459, 460
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	245, 269, 376
SduI	GDGCHC	2 cut(s)	213, 463
SetI	ASST	9 cut(s)	53, 81, 126, 213, 228, 240, 246, 267, 354
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	2 cut(s)	137, 265
SnaBI	TACGTA	1 cut(s)	226
Sse9I	AATT	4 cut(s)	344, 358, 385, 426
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	4 cut(s)	60, 86, 393, 475
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	243, 267, 374
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	3 cut(s)	228, 240, 354
TaqI	TCGA	4 cut(s)	213, 257, 342, 432
TasI	AATT	4 cut(s)	344, 358, 385, 426
Tru1I	TTAA	2 cut(s)	195, 402
Tru9I	TTAA	2 cut(s)	195, 402
TscAI	CASTG	2 cut(s)	24, 139
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	56, 198, 309
TspRI	CASTG	2 cut(s)	24, 139
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	137, 265
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	426
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	2 cut(s)	305, 341
XspI	CTAG	4 cut(s)	60, 86, 393, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.