Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0022408

Physical Location & Seq

Genomic Coordinates Forward (+)

20783480 .. 20785575

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGAGCGGCAAGTCAGTGGTGGCGCTGATCAAGGCCCTGAAGCCGGCATTCCGCTCCAGCAACGACAACGACAAGGTCGCCCTCGCCATCCACGCCTACTTCTTGGCCTCCGGCTACGACCTCACCGCCACTGGTCCCCATGCCTTTTCCCCTGCCGCCCTCAACTCTTCTTCCACGGATGAAGTGGGTATTGAGGGATGGAACGAGCTCGAAGACCAGTACGCATTCGTGTACGTGAACCTGGAAGAGGGTTCGAAGAAGGTCCGGGTCAAGTGCCTTGTGATGGAGGATAAACTGCATGTGTTTTGCGCTCTGGCTGATGGGTCTTCTAAGCATGTCGAACTAGACGTTGGGAATTATGTGGAGGAAACTGGGGGCGGAAATTACTCTAGAGAGTTCAAGAATATGGAGACGCTGGTGAAAATTCTCGACTCTTTGCACCCTTTGAGTTCAGAAATAAGTGAGAGTCGCTGTGAGACGAGCATCAGAACTGAGCCTGCTCCTCAGACATATCTTTCAGGTAGCAAAAGAAAGCAGCTCGATACGCTCTGGGAGGAGAACAAAATTCCTGTTAACGCCATCAACATTGCCAGTGCCGGTTCGGTCAAAGTTGGAAAACTTGAAGAGGAGAAAGTTTCTGTGCGGAATGTGTATAGCACAAGGCGAGTGAAGCAGAAGATAGGTTCGGGATCAGATGAAGCAGTTGGTCTCGGCTTATTGCTTGAAGATCAAGCAATACATGATAAGAAACCTCAGGATTTCCCTAAAACTGCTGCAAACATCCCCATCCCCATCCCCAAGTCCCAGCCCACCCCAGCTTTTCAGTCTGATTCTGTCCCTGTAACACAAGAGTTCCATCTTTTAACGGATCAGATTCTACCAATACCTGTTAAGAAAATAAGTCCGCGCCATCTGCAAGATGGAGAAGTGTACCAAGGTGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

317

Amino Acids

34.53

Weight (kDa)

5.58

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022408)

Species	Orthologous Gene IDs
malus_domestica	MD12G1200000.v1.1 MD17G1162600.v1.1
prunus_persica	Prupe.6G304800_v2.0.a1
pyrus_communis	pycom12g18670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	9, 57
AccII	CGCG	1 cut(s)	910
AciI	CCGC	7 cut(s)	9, 55, 129, 159, 381, 646, 908
AclWI	GGATC	2 cut(s)	700, 879
AcsI	RAATTY	2 cut(s)	426, 567
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	3 cut(s)	224, 236, 935
AfiI	CCNNNNNNNGG	4 cut(s)	46, 250, 286, 943
AgsI	TTSAA	3 cut(s)	403, 626, 728
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	3 cut(s)	211, 541, 821
AluI	AGCT	3 cut(s)	211, 541, 821
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	3 cut(s)	407, 473, 716
AlwI	GGATC	2 cut(s)	700, 879
AoxI	GGCC	2 cut(s)	36, 108
ApeKI	GCWGC	2 cut(s)	538, 776
ApoI	RAATTY	2 cut(s)	426, 567
AspLEI	GCGC	3 cut(s)	28, 314, 912
AspS9I	GGNCC	3 cut(s)	37, 137, 265
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	118, 433
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	137, 265
AxyI	CCTNAGG	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	222, 321
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	550, 763
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	3 cut(s)	407, 473, 716
BfaI	CTAG	2 cut(s)	347, 393
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	4 cut(s)	10, 159, 539, 777
BlsI	GCNGC	4 cut(s)	11, 160, 540, 778
Bme1390I	CCNGG	2 cut(s)	245, 269
Bme18I	GGWCC	2 cut(s)	137, 265
BmgT120I	GGNCC	3 cut(s)	37, 137, 265
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	245, 269
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	222, 321
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	177, 937
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 250, 286, 943
Bse118I	RCCGGY	2 cut(s)	46, 599
Bse1I	ACTGG	4 cut(s)	139, 220, 379, 594
Bse21I	CCTNAGG	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	177, 937
BseGI	GGATG	6 cut(s)	90, 187, 206, 783, 789, 795
BseLI	CCNNNNNNNGG	4 cut(s)	46, 250, 286, 943
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	486, 521, 770
BseNI	ACTGG	4 cut(s)	139, 220, 379, 594
BseRI	GAGGAG	3 cut(s)	495, 572, 644
BseXI	GCAGC	2 cut(s)	550, 763
BseYI	CCCAGC	2 cut(s)	807, 817
Bsh1236I	CGCG	1 cut(s)	910
BshFI	GGCC	2 cut(s)	38, 110
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	47, 114, 268, 600
BslFI	GGGAC	3 cut(s)	123, 790, 824
BslI	CCNNNNNNNGG	4 cut(s)	46, 250, 286, 943
BsmAI	GTCTC	3 cut(s)	407, 473, 716
BsmBI	CGTCTC	2 cut(s)	407, 473
BsmFI	GGGAC	3 cut(s)	123, 790, 824
BsmI	GAATGC	2 cut(s)	50, 227
BsnI	GGCC	2 cut(s)	38, 110
Bso31I	GGTCTC	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	30, 692, 730, 871
BspACI	CCGC	7 cut(s)	9, 55, 129, 159, 381, 646, 908
BspANI	GGCC	2 cut(s)	38, 110
BspCNI	CTCAG	3 cut(s)	487, 520, 769
BspFNI	CGCG	1 cut(s)	910
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	700, 879
BspT104I	TTCGAA	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	716
BsrBI	CCGCTC	2 cut(s)	9, 57
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	2 cut(s)	46, 599
BsrI	ACTGG	4 cut(s)	139, 220, 379, 594
BssAI	RCCGGY	2 cut(s)	46, 599
BssECI	CCNNGG	2 cut(s)	177, 937
BssMI	GATC	4 cut(s)	30, 692, 730, 871
BssT1I	CCWWGG	1 cut(s)	937
Bst2UI	CCWGG	1 cut(s)	245
Bst6I	CTCTTC	3 cut(s)	175, 243, 621
BstBAI	YACGTR	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	7, 48, 501
BstDEI	CTNAG	5 cut(s)	333, 495, 507, 756, 948
BstDSI	CCRYGG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	6 cut(s)	90, 187, 206, 783, 789, 795
BstFNI	CGCG	1 cut(s)	910
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 314, 912
BstKTI	GATC	4 cut(s)	33, 695, 733, 874
BstMAI	GTCTC	3 cut(s)	407, 473, 716
BstMBI	GATC	4 cut(s)	30, 692, 730, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 547, 673, 916
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	305, 341
BstSCI	CCNGG	2 cut(s)	243, 267
BstUI	CGCG	1 cut(s)	910
BstV1I	GCAGC	2 cut(s)	550, 763
BstV2I	GAAGAC	2 cut(s)	222, 321
Bsu36I	CCTNAGG	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	38, 110
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	6 cut(s)	90, 187, 206, 783, 789, 795
BtsIMutI	CAGTG	3 cut(s)	24, 132, 601
Cac8I	GCNNGC	3 cut(s)	7, 48, 501
CfoI	GCGC	3 cut(s)	28, 314, 912
Cfr10I	RCCGGY	2 cut(s)	46, 599
Cfr13I	GGNCC	3 cut(s)	37, 137, 265
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	223, 235, 934
CviAII	CATG	4 cut(s)	143, 302, 338, 743
CviQI	GTAC	3 cut(s)	223, 235, 934
DdeI	CTNAG	5 cut(s)	333, 495, 507, 756, 948
DpnI	GATC	4 cut(s)	32, 694, 732, 873
DpnII	GATC	4 cut(s)	30, 692, 730, 871
Eam1104I	CTCTTC	3 cut(s)	175, 243, 621
EarI	CTCTTC	3 cut(s)	175, 243, 621
EciI	GGCGGA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	937
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	2 cut(s)	137, 265
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	756
EcoICRI	GAGCTC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	937
Esp3I	CGTCTC	2 cut(s)	407, 473
FaeI	CATG	4 cut(s)	146, 305, 341, 746
FaiI	YATR	8 cut(s)	144, 303, 339, 363, 410, 514, 657, 744
FaqI	GGGAC	3 cut(s)	123, 790, 824
FatI	CATG	4 cut(s)	142, 301, 337, 742
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	10, 159, 539, 777
FokI	GGATG	6 cut(s)	77, 194, 213, 770, 776, 782
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	10, 159, 539, 777
FspBI	CTAG	2 cut(s)	347, 393
GlaI	GCGC	3 cut(s)	27, 313, 911
GluI	GCNGC	4 cut(s)	10, 159, 539, 777
GsaI	CCCAGC	2 cut(s)	811, 821
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	38, 110
HapII	CCGG	4 cut(s)	47, 114, 268, 600
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	28, 314, 912
Hin1II	CATG	4 cut(s)	146, 305, 341, 746
Hin6I	GCGC	3 cut(s)	26, 312, 910
HinP1I	GCGC	3 cut(s)	26, 312, 910
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	4 cut(s)	434, 469, 833, 877
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	4 cut(s)	47, 114, 268, 600
HphI	GGTGA	2 cut(s)	118, 433
Hpy166II	GTNNAC	4 cut(s)	235, 241, 577, 934
Hpy188I	TCNGA	6 cut(s)	457, 491, 510, 697, 832, 876
Hpy188III	TCNNGA	5 cut(s)	393, 403, 431, 690, 758
Hpy8I	GTNNAC	4 cut(s)	235, 241, 577, 934
HpyAV	CCTTC	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	237, 351
HpyCH4V	TGCA	4 cut(s)	301, 442, 779, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 547, 673, 916
HpyF3I	CTNAG	5 cut(s)	333, 495, 507, 756, 948
HpySE526I	ACGT	2 cut(s)	237, 351
Hsp92II	CATG	4 cut(s)	146, 305, 341, 746
HspAI	GCGC	3 cut(s)	26, 312, 910
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	30, 692, 730, 871
LmnI	GCTCC	2 cut(s)	62, 508
Lsp1109I	GCAGC	2 cut(s)	550, 763
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	2 cut(s)	347, 393
MaeII	ACGT	2 cut(s)	237, 351
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	4 cut(s)	32, 694, 732, 873
MbiI	CCGCTC	2 cut(s)	9, 57
MboI	GATC	4 cut(s)	30, 692, 730, 871
MboII	GAAGA	9 cut(s)	162, 165, 227, 260, 271, 321, 638, 691, 740
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	4 cut(s)	358, 385, 426, 567
MlyI	GAGTC	2 cut(s)	428, 478
MmeI	TCCRAC	1 cut(s)	595
MroNI	GCCGGC	1 cut(s)	46
MseI	TTAA	3 cut(s)	576, 866, 894
MspI	CCGG	4 cut(s)	47, 114, 268, 600
MspR9I	CCNGG	2 cut(s)	245, 269
Mva1269I	GAATGC	2 cut(s)	50, 227
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	910
MwoI	GCNNNNNNNGC	4 cut(s)	95, 547, 673, 916
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	4 cut(s)	30, 692, 730, 871
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	146, 305, 341, 746
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	693
NspI	RCATGY	2 cut(s)	305, 341
NspV	TTCGAA	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	2 cut(s)	50, 227
PdiI	GCCGGC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	833, 877
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	11, 160, 540, 778
PleI	GAGTC	2 cut(s)	428, 477
PpsI	GAGTC	2 cut(s)	428, 477
Ppu21I	YACGTR	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	2 cut(s)	807, 817
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	37, 137, 265
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	3 cut(s)	224, 236, 935
RsaNI	GTAC	3 cut(s)	223, 235, 934
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	576, 866, 894
SatI	GCNGC	4 cut(s)	10, 159, 539, 777
Sau3AI	GATC	4 cut(s)	30, 692, 730, 871
Sau96I	GGNCC	3 cut(s)	37, 137, 265
SchI	GAGTC	2 cut(s)	428, 478
ScrFI	CCNGG	2 cut(s)	245, 269
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	2 cut(s)	137, 265
Sse9I	AATT	4 cut(s)	358, 385, 426, 567
SsiI	CCGC	7 cut(s)	9, 55, 129, 159, 381, 646, 908
SspMI	CTAG	2 cut(s)	347, 393
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	243, 267
StyI	CCWWGG	1 cut(s)	937
TaiI	ACGT	2 cut(s)	240, 354
TaqI	TCGA	5 cut(s)	213, 257, 342, 432, 543
TaqII	GACCGA	1 cut(s)	595
TasI	AATT	4 cut(s)	358, 385, 426, 567
TauI	GCSGC	2 cut(s)	12, 161
TfiI	GAWTC	2 cut(s)	833, 877
Tru1I	TTAA	3 cut(s)	576, 866, 894
Tru9I	TTAA	3 cut(s)	576, 866, 894
TscAI	CASTG	3 cut(s)	24, 139, 601
TseI	GCWGC	2 cut(s)	538, 776
TspDTI	ATGAA	2 cut(s)	198, 714
TspGWI	ACGGA	2 cut(s)	194, 884
TspRI	CASTG	3 cut(s)	24, 139, 601
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	137, 265
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	426, 567
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	2 cut(s)	305, 341
XcmI	CCANNNNNNNNNTGG	2 cut(s)	184, 920
XspI	CTAG	2 cut(s)	347, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.