Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0022408

Physical Location & Seq

Genomic Coordinates Forward (+)

27551025 .. 27553728

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G304800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGAGCGGGAAGTCGGTGATGGCTTTGATCAAAGCCCTGAAGCCCGCATTTCGCAACGGCAACGACAACGACAAAGTGGTTTTTGCCGTTCACTCTTTCTTCTTAGCTTCCGGCTACGAGCTCACCGCCACAGGTCCCCCTGCCTTCAACCCCTCTGGCCTCACCTCTGCTTCCACAGATGAAGTGGGTATTCAGGACTGGAACGAGCTTGACGACCAGTACGCCTTCATCTACGTGAACCCGGAAAAGGGTTCGAGGAAGGTGCTCGTCAAGTGTCTTGTAATGGAGGGAAAATTGCATGTTTATTATGCTTTGACTGATGGGTCTTCTAAGCATGTGGAACTTGATGTTGGCGACTATGTTGAGGAAAATGGAGGCGGCAATTACTCCAGACAGTTCAAGAATATGGAGATGTTAGTGACACGTCTGGAGTCTCTGCAGAATTTGAGTTCAGAAACAACTGAGACTAACTGTGTGAGGAGGATCAAAATTGAATCTCATTCTGGTCCTGTTCCTGAAACTCATCTTTCAGGACGCAAAAGAAAGGAGCGCCTTACTCTATGTGAGGACAAGGAAACTCCAGCTAACACCACCAATGTCGCCATGGCCGGTTCTGTCAAGCATGTGTACAGCATAAGGCGAGTGAAGCATAAGATAGGTTCAGGGTCAGATGAAGCAGATGGTCTTGGCATACTGATTGAGGACAAGAAAATGGATATTAAGGAGCCTCATGATGTTCCAGCTACTGCCCTCATGGCCGAGCCCGTCCCTGCTCCTAAGGCTGCTGACTCTGTGCCTGCAACCCAGTTCCATCATTTGTCAGATGAGATGCTACCATCACCACTGAAGAAAATAAGTCCTCGCCATCTCCAAGATGGAGAAGTGTACCGAGGTGGTAAAAGGATGAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

306

Amino Acids

33.59

Weight (kDa)

6.84

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022408)

Species	Orthologous Gene IDs
malus_domestica	MD12G1200000.v1.1 MD17G1162600.v1.1
prunus_persica	Prupe.6G304800_v2.0.a1
pyrus_communis	pycom12g18670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	4 cut(s)	9, 48, 129, 381
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	2 cut(s)	609, 759
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	2 cut(s)	62, 869
AfaI	GTAC	3 cut(s)	224, 632, 890
AfiI	CCNNNNNNNGG	2 cut(s)	250, 251
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	151, 403, 497
AjiI	CACGTC	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	5 cut(s)	110, 124, 211, 587, 746
AluI	AGCT	5 cut(s)	110, 124, 211, 587, 746
Alw21I	GWGCWC	2 cut(s)	126, 270
Alw26I	GTCTC	2 cut(s)	441, 461
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	3 cut(s)	160, 609, 759
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	137, 509
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	31, 118, 157, 834
AvaII	GGWCC	2 cut(s)	137, 509
AxyI	CCTNAGG	1 cut(s)	780
BanII	GRGCYC	2 cut(s)	126, 768
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	2 cut(s)	126, 270
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	7 cut(s)	16, 317, 677, 822, 847, 872, 876
BceAI	ACGGC	2 cut(s)	74, 76
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	441, 461
BfmI	CTRYAG	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	382, 786
BlsI	GCNGC	2 cut(s)	383, 787
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	137, 509
BmgBI	CACGTC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	137, 509
BmiI	GGNNCC	2 cut(s)	139, 729
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	3 cut(s)	376, 452, 567
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	606, 892
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 251
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	3 cut(s)	206, 220, 808
Bse21I	CCTNAGG	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	606, 892
BseGI	GGATG	1 cut(s)	912
BseLI	CCNNNNNNNGG	2 cut(s)	250, 251
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	206, 220, 808
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	772
BshFI	GGCC	3 cut(s)	162, 611, 761
BsiHKAI	GWGCWC	2 cut(s)	126, 270
BsiSI	CCGG	3 cut(s)	114, 245, 612
BslFI	GGGAC	2 cut(s)	123, 755
BslI	CCNNNNNNNGG	2 cut(s)	250, 251
BsmAI	GTCTC	2 cut(s)	441, 461
BsmFI	GGGAC	2 cut(s)	123, 755
BsnI	GGCC	3 cut(s)	162, 611, 761
Bsp1286I	GDGCHC	3 cut(s)	126, 270, 768
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	30, 486
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	4 cut(s)	9, 48, 129, 381
BspANI	GGCC	3 cut(s)	162, 611, 761
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	139, 729
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	611
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	206, 220, 808
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	606, 892
BssMI	GATC	2 cut(s)	30, 486
BssT1I	CCWWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	399, 476
BstAUI	TGTACA	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	7, 48, 801
BstDEI	CTNAG	4 cut(s)	106, 333, 465, 780
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	912
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	2 cut(s)	33, 489
BstMAI	GTCTC	2 cut(s)	441, 461
BstMBI	GATC	2 cut(s)	30, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	649, 758, 782
BstNSI	RCATGY	3 cut(s)	305, 341, 629
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	162, 611, 761
BtgI	CCRYGG	1 cut(s)	606
BtrI	CACGTC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	912
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	3 cut(s)	7, 48, 801
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	555
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	137, 509
CseI	GACGC	1 cut(s)	546
Csp6I	GTAC	3 cut(s)	223, 631, 889
CviAII	CATG	6 cut(s)	302, 338, 607, 626, 734, 757
CviQI	GTAC	3 cut(s)	223, 631, 889
DdeI	CTNAG	4 cut(s)	106, 333, 465, 780
DpnI	GATC	2 cut(s)	32, 488
DpnII	GATC	2 cut(s)	30, 486
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	2 cut(s)	609, 759
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	126, 768
Eco47I	GGWCC	2 cut(s)	137, 509
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	62, 869
Eco81I	CCTNAGG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	126, 768
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	6 cut(s)	305, 341, 610, 629, 737, 760
FaqI	GGGAC	2 cut(s)	123, 755
FatI	CATG	6 cut(s)	301, 337, 606, 625, 733, 756
FauI	CCCGC	2 cut(s)	2, 55
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	382, 786
FriOI	GRGCYC	2 cut(s)	126, 768
Fsp4HI	GCNGC	2 cut(s)	382, 786
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	2 cut(s)	382, 786
GsuI	CTGGAG	3 cut(s)	376, 452, 567
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	162, 611, 761
HapII	CCGG	3 cut(s)	114, 245, 612
HgaI	GACGC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	6 cut(s)	305, 341, 610, 629, 737, 760
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HinfI	GANTC	3 cut(s)	434, 497, 791
HpaII	CCGG	3 cut(s)	114, 245, 612
HphI	GGTGA	4 cut(s)	31, 118, 157, 834
Hpy166II	GTNNAC	4 cut(s)	94, 241, 631, 889
Hpy188I	TCNGA	3 cut(s)	457, 673, 826
Hpy188III	TCNNGA	7 cut(s)	197, 393, 403, 431, 518, 534, 734
Hpy8I	GTNNAC	4 cut(s)	94, 241, 631, 889
HpyAV	CCTTC	3 cut(s)	157, 238, 256
HpyCH4III	ACNGT	2 cut(s)	399, 476
HpyCH4IV	ACGT	2 cut(s)	237, 427
HpyCH4V	TGCA	3 cut(s)	301, 442, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	649, 758, 782
HpyF3I	CTNAG	4 cut(s)	106, 333, 465, 780
HpySE526I	ACGT	2 cut(s)	237, 427
Hsp92II	CATG	6 cut(s)	305, 341, 610, 629, 737, 760
HspAI	GCGC	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 486
LmnI	GCTCC	3 cut(s)	550, 727, 781
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	822
MaeII	ACGT	2 cut(s)	237, 427
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	32, 488
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	2 cut(s)	30, 486
MboII	GAAGA	3 cut(s)	94, 321, 862
MhlI	GDGCHC	3 cut(s)	126, 270, 768
MluCI	AATT	4 cut(s)	296, 385, 445, 492
MlyI	GAGTC	2 cut(s)	443, 785
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	3 cut(s)	114, 245, 612
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	649, 758, 782
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	30, 486
NlaIII	CATG	6 cut(s)	305, 341, 610, 629, 737, 760
NlaIV	GGNNCC	2 cut(s)	139, 729
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	3 cut(s)	305, 341, 629
PagI	TCATGA	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	383, 787
PleI	GAGTC	2 cut(s)	442, 785
PpsI	GAGTC	2 cut(s)	442, 785
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	139, 729
PspPI	GGNCC	2 cut(s)	137, 509
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	224, 632, 890
RsaNI	GTAC	3 cut(s)	223, 631, 889
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	2 cut(s)	382, 786
Sau3AI	GATC	2 cut(s)	30, 486
Sau96I	GGNCC	2 cut(s)	137, 509
SchI	GAGTC	2 cut(s)	443, 785
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	126, 270, 768
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	440
SinI	GGWCC	2 cut(s)	137, 509
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	4 cut(s)	296, 385, 445, 492
SsiI	CCGC	4 cut(s)	9, 48, 129, 381
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	399, 476
TaiI	ACGT	2 cut(s)	240, 430
TaqI	TCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	296, 385, 445, 492
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	198, 220, 690
TspRI	CASTG	1 cut(s)	852
VpaK11BI	GGWCC	2 cut(s)	137, 509
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	3 cut(s)	305, 341, 629
XcmI	CCANNNNNNNNNTGG	3 cut(s)	184, 604, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.