Prupe.1G018100_v2.0.a1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018528
Physical Location & Seq
Forward (+)
1268833 .. 1270425
1593 bp
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UTR
Exon/CDS
Intron
Prupe.1G018100.1

Sequence Viewer

Length: 459 bp
ATGGTTTCAAAACGGTGCCGTCTTCTCCGCTCATCAAGTCAGGGTGAGACAGGGTTGTACACCCATATTCAGCCTCTTCAGCCGTCTGTGCCTCTTGGGGAACCGGCGCGGCAGAAAAGGCCTCAGAGCCAAACCATAAAACAGCTGGAGAAGCAGCCTCAGTCTCAGCATCAGCCGAGTATCTTTAGGTTGAATTCGCCGACTGAGGAGAAAAGCGACTACGTCTTTAAGGAGCAGCCTGATGAAGGGTTCAGAGCTTTCCTCAAATGCTGTTCCTTGTGCAAGAAGCAACTCAAACAAGATGGAGATGTCTACATGTATGGATGCCTAACTGCATATTGCTCCCCTGAATGCCGAGACAATCAGATGGCTTTGGACGGGTTTGACAAAAAAATTGCTGCAGATCTTGAAATAAGAAAAATGGAAGTTTTTGGCAAACCAAATGCACCATTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

153

Amino Acids

17.37

Weight (kDa)

8.83

Isoelectric Point (pI)

77.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018528)

Species Orthologous Gene IDs
prunus_persica Prupe.1G018100_v2.0.a1
rosa_laevigata RLG00000010165
rosa_multiflora Rmu_sc0000472.1_g000004
rosa_roxburghii Rroxscaffold_5G00333890
rosa_rugosa Rorug03G0306700
rosa_samantha Rh4AG011100 Rh4BG008700 Rh4CG013300 Rh4DG009300
rosa_wichuraiana Rw4G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 28, 109
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 9, 193, 410
AluBI AGCT 2 cut(s) 145, 257
AluI AGCT 2 cut(s) 145, 257
Alw26I GTCTC 3 cut(s) 41, 168, 351
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 154, 235, 398
ApoI RAATTY 1 cut(s) 193
AspLEI GCGC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 166, 247, 385
BccI CCATC 2 cut(s) 296, 361
BceAI ACGGC 2 cut(s) 3, 67
BcoDI GTCTC 3 cut(s) 41, 168, 351
BfmI CTRYAG 1 cut(s) 399
BglII AGATCT 1 cut(s) 403
BisI GCNGC 4 cut(s) 110, 155, 236, 399
BlsI GCNGC 4 cut(s) 111, 156, 237, 400
BmiI GGNNCC 2 cut(s) 17, 102
BmsI GCATC 2 cut(s) 178, 314
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 246, 278
BpmI CTGGAG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 449
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 449
BseMII CTCAG 4 cut(s) 137, 173, 179, 195
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 3 cut(s) 166, 247, 385
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 3 cut(s) 41, 168, 351
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 2 cut(s) 28, 109
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 4 cut(s) 136, 172, 178, 196
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 17, 102
BspMAI CTGCAG 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 123, 159, 165, 204
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 3 cut(s) 41, 168, 351
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 4 cut(s) 79, 88, 118, 151
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 166, 247, 385
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 454
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 316
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 4 cut(s) 123, 159, 165, 204
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 62
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 193
FaeI CATG 1 cut(s) 319
FaiI YATR 5 cut(s) 66, 137, 317, 321, 337
FatI CATG 1 cut(s) 315
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 110, 155, 236, 399
FokI GGATG 1 cut(s) 336
Fsp4HI GCNGC 4 cut(s) 110, 155, 236, 399
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 110, 155, 236, 399
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 60, 313
Hpy188I TCNGA 3 cut(s) 126, 254, 366
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 2 cut(s) 60, 313
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 282, 335, 401, 446, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 88, 118, 151
HpyF3I CTNAG 4 cut(s) 123, 159, 165, 204
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 232, 347
LpnPI CCDG 6 cut(s) 26, 36, 117, 131, 252, 360
Lsp1109I GCAGC 3 cut(s) 166, 247, 385
LweI GCATC 2 cut(s) 178, 314
MaeII ACGT 1 cut(s) 222
MalI GATC 1 cut(s) 405
MbiI CCGCTC 1 cut(s) 30
MboI GATC 1 cut(s) 403
MboII GAAGA 2 cut(s) 14, 68
MflI RGATCY 1 cut(s) 403
MluCI AATT 2 cut(s) 193, 393
MnlI CCTC 6 cut(s) 84, 102, 132, 168, 199, 272
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 356
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 4 cut(s) 79, 88, 118, 151
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 17, 102
NmeAIII GCCGAG 2 cut(s) 201, 380
NspI RCATGY 1 cut(s) 319
PceI AGGCCT 1 cut(s) 121
PciI ACATGT 1 cut(s) 315
PctI GAATGC 1 cut(s) 356
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 4 cut(s) 111, 156, 237, 400
PscI ACATGT 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 17, 102
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 403
PsyI GACNNNGTC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 4 cut(s) 110, 155, 236, 399
Sau3AI GATC 1 cut(s) 403
SetI ASST 4 cut(s) 147, 191, 225, 259
SfaNI GCATC 2 cut(s) 178, 314
SfcI CTRYAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 193, 393
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 2 cut(s) 28, 109
StuI AGGCCT 1 cut(s) 121
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 225
TasI AATT 2 cut(s) 193, 393
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 3 cut(s) 154, 235, 398
TspDTI ATGAA 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.