Rmu_sc0000472.1_g000004

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000472.1
OG0018528
Physical Location & Seq
Reverse (-)
15390 .. 16246
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000472.1_g000004.1.cds

Sequence Viewer

Length: 471 bp
atgaatcgtttagagtcgcctgtggctttgtggcaccagaagcacaagcaagctccattagtcattgacgacatgctgcctcgagtacaacaaccagccaccacgaaaccaagtgtcatacaacctcgccggagtatctttcagttggcttcaccgccggggtcaccggttcgggagaggcaacgtaaggaagggtctaaggattttctcaaagcctgttccttgtgcaagaaggatctcccagaaaaggacctctacatgtatggtgacctagcctcattctgctccattgaatgccgagatcatcagatgactttggacgggtttcacaaaaaaactgtagtagattgtaataatgggatgcttaaggaagctatagccctagcaaaggtacatgtactgtacctagcactgaagaagaagatacgtgatgccatattagcccaagaagaagctacggcaatgccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

156

Amino Acids

17.65

Weight (kDa)

9.24

Isoelectric Point (pI)

62.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018528)

Species Orthologous Gene IDs
prunus_persica Prupe.1G018100_v2.0.a1
rosa_laevigata RLG00000010165
rosa_multiflora Rmu_sc0000472.1_g000004
rosa_roxburghii Rroxscaffold_5G00333890
rosa_rugosa Rorug03G0306700
rosa_samantha Rh4AG011100 Rh4BG008700 Rh4CG013300 Rh4DG009300
rosa_wichuraiana Rw4G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 4 cut(s) 87, 393, 399, 404
AfiI CCNNNNNNNGG 2 cut(s) 247, 388
AflII CTTAAG 1 cut(s) 365
AflIII ACRYGT 2 cut(s) 258, 394
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 3 cut(s) 53, 374, 455
AluI AGCT 3 cut(s) 53, 374, 455
AlwI GGATC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 76
AsiGI ACCGGT 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 3 cut(s) 144, 156, 278
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 3 cut(s) 272, 383, 407
BfmI CTRYAG 2 cut(s) 339, 375
BfrI CTTAAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 2 cut(s) 351, 421
BpuMI CCSGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 388
Bse118I RCCGGY 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 247, 388
BseMI GCAATG 1 cut(s) 468
BseXI GCAGC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 33
BshTI ACCGGT 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 3 cut(s) 130, 158, 167
BslI CCNNNNNNNGG 2 cut(s) 247, 388
BsmI GAATGC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 81
Bsp143I GATC 2 cut(s) 235, 301
BspACI CCGC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 33
BspTI CTTAAG 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 2 cut(s) 235, 301
Bst4CI ACNGT 2 cut(s) 340, 402
BstAFI CTTAAG 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 198
BstEII GGTNACC 2 cut(s) 162, 266
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 2 cut(s) 238, 304
BstMBI GATC 2 cut(s) 235, 301
BstMWI GCNNNNNNNGC 2 cut(s) 40, 440
BstNSI RCATGY 3 cut(s) 76, 262, 398
BstPI GGTNACC 2 cut(s) 162, 266
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 2 cut(s) 339, 375
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtsCI GGATG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 4 cut(s) 86, 392, 398, 403
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 3 cut(s) 73, 259, 395
CviQI GTAC 4 cut(s) 86, 392, 398, 403
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 237, 303
DpnII GATC 2 cut(s) 235, 301
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 81
Eco91I GGTNACC 2 cut(s) 162, 266
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 250
EcoO65I GGTNACC 2 cut(s) 162, 266
FaeI CATG 3 cut(s) 76, 262, 398
FaiI YATR 8 cut(s) 74, 119, 260, 264, 377, 396, 437, 469
FatI CATG 3 cut(s) 72, 258, 394
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 3 cut(s) 272, 383, 407
GluI GCNGC 1 cut(s) 77
HapII CCGG 3 cut(s) 130, 158, 167
Hin1II CATG 3 cut(s) 76, 262, 398
HinfI GANTC 2 cut(s) 4, 14
HpaII CCGG 3 cut(s) 130, 158, 167
HphI GGTGA 3 cut(s) 144, 156, 278
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 185, 226
HpyCH4III ACNGT 2 cut(s) 340, 402
HpyCH4IV ACGT 2 cut(s) 184, 427
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 440
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 2 cut(s) 184, 427
Hsp92II CATG 3 cut(s) 76, 262, 398
Kzo9I GATC 2 cut(s) 235, 301
LmnI GCTCC 2 cut(s) 58, 290
LpnPI CCDG 8 cut(s) 33, 50, 108, 143, 171, 180, 229, 255
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 2 cut(s) 351, 421
MaeI CTAG 3 cut(s) 272, 383, 407
MaeII ACGT 2 cut(s) 184, 427
MaeIII GTNAC 2 cut(s) 162, 266
MalI GATC 2 cut(s) 237, 303
MboI GATC 2 cut(s) 235, 301
MboII GAAGA 4 cut(s) 427, 430, 433, 461
MflI RGATCY 1 cut(s) 235
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 5 cut(s) 90, 135, 171, 263, 286
MseI TTAA 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 3 cut(s) 130, 158, 167
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 40, 440
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 235, 301
NlaIII CATG 3 cut(s) 76, 262, 398
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 162, 266
NspI RCATGY 3 cut(s) 76, 262, 398
PaeR7I CTCGAG 1 cut(s) 81
PciI ACATGT 2 cut(s) 258, 394
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 4
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 250
PscI ACATGT 2 cut(s) 258, 394
Psp5II RGGWCCY 1 cut(s) 250
PspEI GGTNACC 2 cut(s) 162, 266
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PspXI VCTCGAGB 1 cut(s) 81
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 4 cut(s) 87, 393, 399, 404
RsaNI GTAC 4 cut(s) 86, 392, 398, 403
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 235, 301
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 159
SfaNI GCATC 2 cut(s) 351, 421
SfcI CTRYAG 2 cut(s) 339, 375
Sfr274I CTCGAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 81, 365
SmoI CTYRAG 2 cut(s) 81, 365
SsiI CCGC 1 cut(s) 155
SspMI CTAG 3 cut(s) 272, 383, 407
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 340, 402
TaiI ACGT 2 cut(s) 187, 430
TaqI TCGA 1 cut(s) 82
TatI WGTACW 2 cut(s) 85, 397
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 162, 266
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 2 cut(s) 162, 266
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 386
XceI RCATGY 3 cut(s) 76, 262, 398
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 3 cut(s) 272, 383, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.