Rh4BG008700

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018528
Physical Location & Seq
Forward (+)
1225979 .. 1226906
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG008700.1

Sequence Viewer

Length: 537 bp
ATGGCCTCGAAACGGACCCGTATTTTTCAATCATCGAGTCACGGTAATATCCGCGTATTCAACCAAATGAATCGTTTAGAGTCGCCTGTGGCTTTGTGGCACCAGAAGCACAAGCAAGCTCCATTAGTCATTGACGACATGCTGCCTCGAGTACAACAACCAGCCACCACGAAACCAAGTGTCATACAACCTCGCCGGAGTATCTTTCAGTTGGCTTCACCGCCGGGGTCACCGGTTCGGGAGAGGCAACGTAAGGAAGGGTCTAAGGATTTTCTCAAAGCCTGTTCCTTGTGCAAGAAGGATCTCCCAGAAAAGGACCTCTACATGTATGGTGACCTAGCCGCATTCTGCTCCATTGAATGCCGAGATCATCAGATGACTTTGGACGGGTTTCACAAAAAAACTGTAGTAGATTGTAATAATGGAATGCTTAAGGAAGCTATAGCCCTAGGAAAGGTACATGTACTGTACCTAGCACGGAAGAAGAAGATACGTGATGCCATATTAGCCGAAGAAGAAGCTACGGCAATGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

178

Amino Acids

20.21

Weight (kDa)

9.62

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 82 - 129 1.1e-17 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018528)

Species Orthologous Gene IDs
prunus_persica Prupe.1G018100_v2.0.a1
rosa_laevigata RLG00000010165
rosa_multiflora Rmu_sc0000472.1_g000004
rosa_roxburghii Rroxscaffold_5G00333890
rosa_rugosa Rorug03G0306700
rosa_samantha Rh4AG011100 Rh4BG008700 Rh4CG013300 Rh4DG009300
rosa_wichuraiana Rw4G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 52, 221, 342
AclWI GGATC 1 cut(s) 309
AfaI GTAC 4 cut(s) 153, 459, 465, 470
AfiI CCNNNNNNNGG 3 cut(s) 12, 313, 454
AflII CTTAAG 1 cut(s) 431
AflIII ACRYGT 2 cut(s) 324, 460
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 29, 61, 359
AluBI AGCT 3 cut(s) 119, 440, 521
AluI AGCT 3 cut(s) 119, 440, 521
AlwI GGATC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 142
AsiGI ACCGGT 1 cut(s) 232
AspA2I CCTAGG 1 cut(s) 448
AspS9I GGNCC 2 cut(s) 15, 316
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 3 cut(s) 210, 222, 344
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 15, 316
AvrII CCTAGG 1 cut(s) 448
BanI GGYRCC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 225
BfaI CTAG 3 cut(s) 338, 449, 473
BfmI CTRYAG 2 cut(s) 405, 441
BfrI CTTAAG 1 cut(s) 431
BisI GCNGC 2 cut(s) 143, 342
BlnI CCTAGG 1 cut(s) 448
BlsI GCNGC 2 cut(s) 144, 343
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 15, 316
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 15, 316
BmiI GGNNCC 2 cut(s) 17, 101
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 487
BpuMI CCSGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 224, 448
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 313, 454
Bse118I RCCGGY 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 224, 448
BseLI CCNNNNNNNGG 3 cut(s) 12, 313, 454
BseMI GCAATG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 99
BshTI ACCGGT 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 196, 224, 233
BslI CCNNNNNNNGG 3 cut(s) 12, 313, 454
BsmI GAATGC 3 cut(s) 344, 365, 432
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 2 cut(s) 301, 367
BspACI CCGC 3 cut(s) 52, 221, 342
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 17, 101
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 99
BspTI CTTAAG 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 224, 448
BssMI GATC 2 cut(s) 301, 367
BssT1I CCWWGG 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 44, 406, 468
BstAFI CTTAAG 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 264
BstEII GGTNACC 2 cut(s) 228, 332
BstENI CCTNNNNNAGG 1 cut(s) 452
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 2 cut(s) 304, 370
BstMBI GATC 2 cut(s) 301, 367
BstMWI GCNNNNNNNGC 2 cut(s) 106, 506
BstNSI RCATGY 3 cut(s) 142, 328, 464
BstPI GGTNACC 2 cut(s) 228, 332
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 2 cut(s) 405, 441
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 15, 316
Csp6I GTAC 4 cut(s) 152, 458, 464, 469
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 3 cut(s) 139, 325, 461
CviQI GTAC 4 cut(s) 152, 458, 464, 469
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 303, 369
DpnII GATC 2 cut(s) 301, 367
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 15, 316
Eco88I CYCGRG 1 cut(s) 147
Eco91I GGTNACC 2 cut(s) 228, 332
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 316
EcoO65I GGTNACC 2 cut(s) 228, 332
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 3 cut(s) 142, 328, 464
FaiI YATR 8 cut(s) 140, 185, 326, 330, 443, 462, 503, 535
FatI CATG 3 cut(s) 138, 324, 460
Fnu4HI GCNGC 2 cut(s) 143, 342
Fsp4HI GCNGC 2 cut(s) 143, 342
FspBI CTAG 3 cut(s) 338, 449, 473
GluI GCNGC 2 cut(s) 143, 342
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 196, 224, 233
Hin1II CATG 3 cut(s) 142, 328, 464
HinfI GANTC 3 cut(s) 37, 70, 80
HpaII CCGG 3 cut(s) 196, 224, 233
HphI GGTGA 3 cut(s) 210, 222, 344
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 251, 292
HpyCH4III ACNGT 3 cut(s) 44, 406, 468
HpyCH4IV ACGT 2 cut(s) 250, 493
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 506
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 2 cut(s) 250, 493
Hsp92II CATG 3 cut(s) 142, 328, 464
Kzo9I GATC 2 cut(s) 301, 367
LmnI GCTCC 2 cut(s) 124, 356
LpnPI CCDG 8 cut(s) 99, 116, 174, 209, 237, 246, 295, 321
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 338, 449, 473
MaeII ACGT 2 cut(s) 250, 493
MaeIII GTNAC 3 cut(s) 38, 228, 332
MalI GATC 2 cut(s) 303, 369
MboI GATC 2 cut(s) 301, 367
MboII GAAGA 5 cut(s) 493, 496, 499, 524, 527
MflI RGATCY 1 cut(s) 301
MlyI GAGTC 2 cut(s) 46, 89
MnlI CCTC 5 cut(s) 16, 156, 201, 237, 329
MseI TTAA 1 cut(s) 432
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 3 cut(s) 196, 224, 233
MspR9I CCNGG 1 cut(s) 225
Mva1269I GAATGC 3 cut(s) 344, 365, 432
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 106, 506
NciI CCSGG 1 cut(s) 225
NdeII GATC 2 cut(s) 301, 367
NlaIII CATG 3 cut(s) 142, 328, 464
NlaIV GGNNCC 2 cut(s) 17, 101
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 3 cut(s) 38, 228, 332
NspI RCATGY 3 cut(s) 142, 328, 464
PaeR7I CTCGAG 1 cut(s) 147
PciI ACATGT 2 cut(s) 324, 460
PctI GAATGC 3 cut(s) 344, 365, 432
PfeI GAWTC 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 2 cut(s) 144, 343
PleI GAGTC 2 cut(s) 45, 88
PpsI GAGTC 2 cut(s) 45, 88
Ppu21I YACGTR 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 316
PscI ACATGT 2 cut(s) 324, 460
Psp5II RGGWCCY 1 cut(s) 316
PspEI GGTNACC 2 cut(s) 228, 332
PspN4I GGNNCC 2 cut(s) 17, 101
PspPI GGNCC 2 cut(s) 15, 316
PspPPI RGGWCCY 1 cut(s) 316
PspXI VCTCGAGB 1 cut(s) 147
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 4 cut(s) 153, 459, 465, 470
RsaNI GTAC 4 cut(s) 152, 458, 464, 469
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 143, 342
Sau3AI GATC 2 cut(s) 301, 367
Sau96I GGNCC 2 cut(s) 15, 316
SchI GAGTC 2 cut(s) 46, 89
ScrFI CCNGG 1 cut(s) 225
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 2 cut(s) 405, 441
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 15, 316
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 147, 431
SmoI CTYRAG 2 cut(s) 147, 431
SsiI CCGC 3 cut(s) 52, 221, 342
SspMI CTAG 3 cut(s) 338, 449, 473
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 44, 406, 468
TaiI ACGT 2 cut(s) 253, 496
TaqI TCGA 3 cut(s) 8, 35, 148
TatI WGTACW 2 cut(s) 151, 463
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TseFI GTSAC 3 cut(s) 38, 228, 332
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 3 cut(s) 38, 228, 332
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 2 cut(s) 28, 493
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 15, 316
XagI CCTNNNNNAGG 1 cut(s) 452
XceI RCATGY 3 cut(s) 142, 328, 464
XhoI CTCGAG 1 cut(s) 147
XmaJI CCTAGG 1 cut(s) 448
XspI CTAG 3 cut(s) 338, 449, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.