Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001390

Physical Location & Seq

Genomic Coordinates Forward (+)

1452967 .. 1456616

Gene Structure 3650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G020700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAAGTTCTCTCAGAGTACAGGCTAATTCCGGTGTGCTTACTAATTTCGACGTGCTCAAATTTCTAGAATCTAGAGGGGCTTCTGAAGATTCAGCACGGGTTTTTTCTGACGTAACGCCATCAGAGAATAAGGTTTATGGTTATTTGTTTGGGACTCCTGCTCGTGGTCAAACAACGGAGAATATCAATGAGTTCAAGGAAAAGTGTAAGAAGTATGACCTAGCGGAAGCTGAGGTGCTCAATATCATCAACACTAGGCCATCTAGCATTGTTGGAATCTACCCGCTTATTGAGAATTGCGACTTGCGTTTAGGAGATACTGTTGAAGAGCTGGTAGAATTGGTAGTAGAGGTGTTTCCATCTCCTCTTCCAGCAAAGACTGTCGAAAATGATGCAAAAACCACAAATGTGGAAAAAATTGAAGACCAGAATGATAACGATGAAGGGAAACCAGAAAATGAGGAAGAAATGGAGACAATCGATGGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005886 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009360 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030424 GO:0030425 GO:0030880 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0036477 GO:0042575 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097447 GO:0097458 GO:0097659 GO:0097747 GO:0120025 GO:0120038 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

165

Amino Acids

18.22

Weight (kDa)

4.28

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950
fragaria_vesca	FvH4_4g01070 FvH4_4g01070 FvH4_5g27570
malus_domestica	MD13G1198900.v1.1
prunus_persica	Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1
pyrus_communis	pycom13g17270
rosa_chinensis	RchiOBHm_Chr4g0387641 RchiOBHm_Chr6g0280701
rosa_laevigata	RLG00000010104 RLG00000013035
rosa_multiflora	Rmu_sc0000976.1_g000021 Rmu_sc0003953.1_g000006
rosa_roxburghii	Rroxscaffold_7G00187720
rosa_rugosa	Rorug03G0311800 Rorug03G0311900 Rorug03G0312000 Rorug03G0312100 Rorug06G0133900 Rorug06G0133900 Rorug06G0133900 Rorug06G0134000
rosa_samantha	Rh4AG017400 Rh4BG012200 Rh4CG018600 Rh4DG013200 Rh6AG246600 Rh6BG248900 Rh6CG250000 Rh6DG241500
rosa_wichuraiana	Rw4G001120 Rw6G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	227, 287
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	199, 329, 425
AjiI	CACGTC	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	2 cut(s)	233, 334
AluI	AGCT	2 cut(s)	233, 334
Alw21I	GWGCWC	2 cut(s)	60, 243
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	62
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	60, 243
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	4 cut(s)	130, 271, 370, 479
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	5 cut(s)	68, 75, 224, 258, 267
BmgBI	CACGTC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	28, 225
BseRI	GAGGAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	60, 243
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	60, 243
BspACI	CCGC	2 cut(s)	227, 287
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	27, 226
BspDI	ATCGAT	1 cut(s)	483
BspQI	GCTCTTC	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	325, 385
Bst6I	CTCTTC	2 cut(s)	324, 375
BstDEI	CTNAG	3 cut(s)	14, 234, 492
BstMAI	GTCTC	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	412
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	20
CviJI	RGCY	5 cut(s)	26, 83, 233, 262, 334
CviKI_1	RGCY	5 cut(s)	26, 83, 233, 262, 334
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	14, 234, 492
Eam1104I	CTCTTC	2 cut(s)	324, 375
EarI	CTCTTC	2 cut(s)	324, 375
Eco57I	CTGAAG	1 cut(s)	108
FaiI	YATR	2 cut(s)	141, 219
FaqI	GGGAC	1 cut(s)	169
FauI	CCCGC	1 cut(s)	294
FspBI	CTAG	5 cut(s)	68, 75, 224, 258, 267
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	33
HinfI	GANTC	4 cut(s)	71, 92, 157, 279
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	4 cut(s)	17, 88, 112, 127
Hpy188III	TCNNGA	2 cut(s)	68, 75
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	325, 385
HpyCH4IV	ACGT	2 cut(s)	54, 114
HpyCH4V	TGCA	1 cut(s)	398
HpyF3I	CTNAG	3 cut(s)	14, 234, 492
HpySE526I	ACGT	2 cut(s)	54, 114
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	8, 46, 174, 320, 387, 443, 468
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	5 cut(s)	68, 75, 224, 258, 267
MaeII	ACGT	2 cut(s)	54, 114
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	5 cut(s)	101, 341, 362, 437, 479
MhlI	GDGCHC	2 cut(s)	60, 243
MluCI	AATT	6 cut(s)	28, 46, 62, 298, 341, 420
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	71, 229, 346, 378, 457
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	71, 92, 279
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	60, 243
SetI	ASST	8 cut(s)	57, 117, 138, 225, 235, 240, 336, 357
SfaNI	GCATC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	6 cut(s)	28, 46, 62, 298, 341, 420
SsiI	CCGC	2 cut(s)	227, 287
SspMI	CTAG	5 cut(s)	68, 75, 224, 258, 267
TaaI	ACNGT	2 cut(s)	325, 385
TaiI	ACGT	2 cut(s)	57, 117
TaqI	TCGA	3 cut(s)	51, 387, 483
TasI	AATT	6 cut(s)	28, 46, 62, 298, 341, 420
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	3 cut(s)	71, 92, 279
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	194
XapI	RAATTY	1 cut(s)	62
XbaI	TCTAGA	2 cut(s)	67, 74
XspI	CTAG	5 cut(s)	68, 75, 224, 258, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.