Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001390

Physical Location & Seq

Genomic Coordinates Reverse (-)

33380196 .. 33381293

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGACCTTTTCTGTGAGAAAGAGGGTCAGGTTTGCTGAGGAATGTTCACATTTTGGGGATGAATTGTTGTTGGATACGAATTATGAGAAGTTCTTGGGGTTAGTTCAGGTTGGTGATAAAAATTTGGACAATTTTTCTGTGGATCAAGCTACTTCTTTGCATTATGAGCCCAAATTAGATGTTCCAGAAACTTCGAAAAAATCTCAGGTGACTGAGAAGAATTTGAGGAAGGGTATGATTAGGGGAGAGATGAATGGCCTTGAGAAATCTGCTGCTCTTCTGAGCACAGAAGTTAATGAGGGCCCAAGTAATGTTAGGTATGCGCTGAAGAAAAACAGGGCCACTGTGGAAAAAGAGGATCTCCGAGTGAACAAGAGTTTATTTGTGATGGAGAATGTAAAATTGGAACCTCTAGATTTTGATTCTGGTGGGATGAATCAGTGTTCCAATAAAAGAACTCACTTAGAAGCTTTTAACACTCAAAAATCTTTGAAAAGTGCAGTGGAGAATGTAAAAGTGGAAGCTCCGGATTCTGATTCTGGTTGGAACCGTGAGATAAGTGAGCGTTGCAGTAAAAGACCTTGTTTAGAGGCTTCTGACACTCCAAAGAAACTGAAAAGTTCTCGGGTGAAAAAGAAAAACGAAATTAACAGAACTTCAAGGAGATTTCTGAAGAAAGAAAAGTTGAAGATAAATATTCCTAACAAGTCTGCTCGTCTTTTGCCTGAAAAAAAGACTGGGATGAAGAAGGTTAATGTGGAAGCTGCACGTGCTGTTTCTGGTAGGTCAAATGTGCTCTCTAGCAAACAAAAGGGTTCCCGGATCCTACAATCTGCTCCGCGTATGTGTAATCGTGGAGCTTTATCTATTCATATTGATGAGACGCATGAAACATTTCTCAACCTTGCTGTGATGTCTGGTGACATAATGATATACACACCCAGAAATGGTACAAGAAATATTTATGAGGATATAGAGAGTTCATCAGATTCAGAAGAAACTGTACTAGACAACAATCAACGTGATGGATATCATCCCTCATGTATTTATCTTCTCTCCTTTAAGATTTTGTTTATCTTTACTAGTTTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005886 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009360 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030424 GO:0030425 GO:0030880 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0036477 GO:0042575 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097447 GO:0097458 GO:0097659 GO:0097747 GO:0120025 GO:0120038 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

365

Amino Acids

41.31

Weight (kDa)

9.3

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950
fragaria_vesca	FvH4_4g01070 FvH4_4g01070 FvH4_5g27570
malus_domestica	MD13G1198900.v1.1
prunus_persica	Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1
pyrus_communis	pycom13g17270
rosa_chinensis	RchiOBHm_Chr4g0387641 RchiOBHm_Chr6g0280701
rosa_laevigata	RLG00000010104 RLG00000013035
rosa_multiflora	Rmu_sc0000976.1_g000021 Rmu_sc0003953.1_g000006
rosa_roxburghii	Rroxscaffold_7G00187720
rosa_rugosa	Rorug03G0311800 Rorug03G0311900 Rorug03G0312000 Rorug03G0312100 Rorug06G0133900 Rorug06G0133900 Rorug06G0133900 Rorug06G0134000
rosa_samantha	Rh4AG017400 Rh4BG012200 Rh4CG018600 Rh4DG013200 Rh6AG246600 Rh6BG248900 Rh6CG250000 Rh6DG241500
rosa_wichuraiana	Rw4G001120 Rw6G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	844
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	1 cut(s)	842
AclWI	GGATC	4 cut(s)	153, 369, 820, 833
AcsI	RAATTY	2 cut(s)	124, 223
AcuI	CTGAAG	2 cut(s)	350, 695
AcvI	CACGTG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	955, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	950
AgsI	TTSAA	3 cut(s)	496, 663, 691
AhlI	ACTAGT	1 cut(s)	1085
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	152, 473, 527, 767, 863
AluI	AGCT	5 cut(s)	152, 473, 527, 767, 863
Alw21I	GWGCWC	2 cut(s)	290, 801
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	4 cut(s)	153, 369, 820, 833
Ama87I	CYCGRG	1 cut(s)	627
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	3 cut(s)	259, 304, 342
ApaI	GGGCCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	275, 767
ApoI	RAATTY	2 cut(s)	124, 223
Asp700I	GAANNNNTTC	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	4 cut(s)	6, 304, 305, 342
AsuC2I	CCSGG	1 cut(s)	823
AsuHPI	GGTGA	4 cut(s)	128, 223, 643, 935
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	825
BanII	GRGCYC	2 cut(s)	174, 308
BarI	GAAGNNNNNNTAC	2 cut(s)	990, 1022
BbrPI	CACGTG	1 cut(s)	773
Bbv12I	GWGCWC	2 cut(s)	290, 801
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	262, 754
BccI	CCATC	2 cut(s)	385, 1022
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	878
BcuI	ACTAGT	1 cut(s)	1085
BfaI	CTAG	5 cut(s)	416, 804, 1010, 1086, 1096
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	276, 768
BlsI	GCNGC	2 cut(s)	277, 769
Bme1390I	CCNGG	1 cut(s)	823
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	4 cut(s)	6, 304, 305, 342
BmiI	GGNNCC	6 cut(s)	7, 306, 411, 551, 820, 827
BmrFI	CCNGG	1 cut(s)	823
BmrI	ACTGGG	1 cut(s)	750
BmuI	ACTGGG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	823
BsaAI	YACGTR	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	1032
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	950
Bse1I	ACTGG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	1032
BseAI	TCCGGA	1 cut(s)	529
BseGI	GGATG	4 cut(s)	67, 441, 750, 1036
BseJI	GATNNNNATC	1 cut(s)	1032
BseLI	CCNNNNNNNGG	1 cut(s)	950
BseMII	CTCAG	4 cut(s)	30, 207, 221, 275
BseNI	ACTGG	1 cut(s)	745
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	262, 754
BsgI	GTGCAG	2 cut(s)	522, 753
Bsh1236I	CGCG	1 cut(s)	844
BshFI	GGCC	3 cut(s)	261, 306, 344
BsiHKAI	GWGCWC	2 cut(s)	290, 801
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	530, 823
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	950
BsmAI	GTCTC	1 cut(s)	878
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	261, 306, 344
BsoBI	CYCGRG	1 cut(s)	627
Bsp119I	TTCGAA	1 cut(s)	197
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	4 cut(s)	174, 290, 308, 801
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	145, 361, 825
BspACI	CCGC	1 cut(s)	842
BspANI	GGCC	3 cut(s)	261, 306, 344
BspCNI	CTCAG	4 cut(s)	31, 208, 220, 276
BspEI	TCCGGA	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	844
BspLI	GGNNCC	6 cut(s)	7, 306, 411, 551, 820, 827
BspPI	GGATC	4 cut(s)	153, 369, 820, 833
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	745
BssMI	GATC	3 cut(s)	145, 361, 825
Bst4CI	ACNGT	3 cut(s)	349, 554, 1006
Bst6I	CTCTTC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	197
BstDEI	CTNAG	5 cut(s)	39, 207, 216, 284, 466
BstF5I	GGATG	4 cut(s)	67, 441, 750, 1036
BstFNI	CGCG	1 cut(s)	844
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	148, 364, 828
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	3 cut(s)	145, 361, 825
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 773
BstSCI	CCNGG	1 cut(s)	821
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	262, 754
BstX2I	RGATCY	2 cut(s)	361, 825
BstYI	RGATCY	2 cut(s)	361, 825
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	261, 306, 344
BtsCI	GGATG	4 cut(s)	67, 441, 750, 1036
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	3 cut(s)	345, 449, 510
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	4 cut(s)	6, 304, 305, 342
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	2 cut(s)	954, 1007
CviAII	CATG	2 cut(s)	890, 1044
CviQI	GTAC	2 cut(s)	954, 1007
DdeI	CTNAG	5 cut(s)	39, 207, 216, 284, 466
DpnI	GATC	3 cut(s)	147, 363, 827
DpnII	GATC	3 cut(s)	145, 361, 825
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	174, 308
Eco32I	GATATC	1 cut(s)	1034
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	350, 695
Eco72I	CACGTG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	6, 304
EcoRV	GATATC	1 cut(s)	1034
EcoT38I	GRGCYC	2 cut(s)	174, 308
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	2 cut(s)	893, 1047
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	889, 1043
Fnu4HI	GCNGC	2 cut(s)	276, 768
FokI	GGATG	4 cut(s)	74, 448, 757, 1023
FriOI	GRGCYC	2 cut(s)	174, 308
Fsp4HI	GCNGC	2 cut(s)	276, 768
FspBI	CTAG	5 cut(s)	416, 804, 1010, 1086, 1096
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	276, 768
HaeIII	GGCC	3 cut(s)	261, 306, 344
HapII	CCGG	2 cut(s)	530, 823
HgaI	GACGC	1 cut(s)	895
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	893, 1047
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	5 cut(s)	425, 439, 533, 539, 992
HpaII	CCGG	2 cut(s)	530, 823
HphI	GGTGA	4 cut(s)	128, 223, 643, 935
Hpy166II	GTNNAC	2 cut(s)	50, 373
Hpy188I	TCNGA	7 cut(s)	285, 368, 538, 601, 675, 991, 997
Hpy188III	TCNNGA	3 cut(s)	188, 416, 530
Hpy8I	GTNNAC	2 cut(s)	50, 373
HpyAV	CCTTC	2 cut(s)	226, 745
HpyCH4III	ACNGT	3 cut(s)	349, 554, 1006
HpyCH4IV	ACGT	2 cut(s)	772, 1024
HpyCH4V	TGCA	4 cut(s)	163, 503, 573, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 773
HpyF3I	CTNAG	5 cut(s)	39, 207, 216, 284, 466
HpySE526I	ACGT	2 cut(s)	772, 1024
Hsp92II	CATG	2 cut(s)	893, 1047
HspAI	GCGC	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	145, 361, 825
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	532, 844, 860
Lsp1109I	GCAGC	2 cut(s)	262, 754
MaeI	CTAG	5 cut(s)	416, 804, 1010, 1086, 1096
MaeII	ACGT	2 cut(s)	772, 1024
MaeIII	GTNAC	2 cut(s)	211, 923
MalI	GATC	3 cut(s)	147, 363, 827
MboI	GATC	3 cut(s)	145, 361, 825
MboII	GAAGA	8 cut(s)	232, 272, 343, 688, 703, 760, 1010, 1046
MflI	RGATCY	2 cut(s)	361, 825
MhlI	GDGCHC	4 cut(s)	174, 290, 308, 801
MluCI	AATT	8 cut(s)	65, 82, 124, 133, 176, 223, 404, 648
MmeI	TCCRAC	2 cut(s)	54, 527
MnlI	CCTC	9 cut(s)	18, 34, 222, 295, 352, 423, 586, 964, 1051
MroI	TCCGGA	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	5 cut(s)	297, 477, 651, 756, 1065
MslI	CAYNNNNRTG	1 cut(s)	879
MspI	CCGG	2 cut(s)	530, 823
MspR9I	CCNGG	1 cut(s)	823
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	2 cut(s)	169, 773
NciI	CCSGG	1 cut(s)	823
NdeII	GATC	3 cut(s)	145, 361, 825
NlaIII	CATG	2 cut(s)	893, 1047
NlaIV	GGNNCC	6 cut(s)	7, 306, 411, 551, 820, 827
NmuCI	GTSAC	2 cut(s)	211, 923
NspV	TTCGAA	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	5 cut(s)	425, 439, 533, 539, 992
PfoI	TCCNGGA	1 cut(s)	821
PkrI	GCNGC	2 cut(s)	277, 769
PmaCI	CACGTG	1 cut(s)	773
PmlI	CACGTG	1 cut(s)	773
Ppu21I	YACGTR	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
PspCI	CACGTG	1 cut(s)	773
PspN4I	GGNNCC	6 cut(s)	7, 306, 411, 551, 820, 827
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	4 cut(s)	6, 304, 305, 342
PspPPI	RGGWCCY	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	361, 825
RsaI	GTAC	2 cut(s)	955, 1008
RsaNI	GTAC	2 cut(s)	954, 1007
RseI	CAYNNNNRTG	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	297, 477, 651, 756, 1065
SatI	GCNGC	2 cut(s)	276, 768
Sau3AI	GATC	3 cut(s)	145, 361, 825
Sau96I	GGNCC	4 cut(s)	6, 304, 305, 342
ScrFI	CCNGG	1 cut(s)	823
SduI	GDGCHC	4 cut(s)	174, 290, 308, 801
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	1085
Sse9I	AATT	8 cut(s)	65, 82, 124, 133, 176, 223, 404, 648
SsiI	CCGC	1 cut(s)	842
SspI	AATATT	2 cut(s)	700, 964
SspMI	CTAG	5 cut(s)	416, 804, 1010, 1086, 1096
StyD4I	CCNGG	1 cut(s)	821
TaaI	ACNGT	3 cut(s)	349, 554, 1006
TaiI	ACGT	2 cut(s)	775, 1027
TaqI	TCGA	1 cut(s)	197
TasI	AATT	8 cut(s)	65, 82, 124, 133, 176, 223, 404, 648
TatI	WGTACW	1 cut(s)	1006
TfiI	GAWTC	5 cut(s)	425, 439, 533, 539, 992
Tru1I	TTAA	5 cut(s)	297, 477, 651, 756, 1065
Tru9I	TTAA	5 cut(s)	297, 477, 651, 756, 1065
TscAI	CASTG	3 cut(s)	352, 449, 510
TseFI	GTSAC	2 cut(s)	211, 923
TseI	GCWGC	2 cut(s)	275, 767
Tsp45I	GTSAC	2 cut(s)	211, 923
TspDTI	ATGAA	7 cut(s)	78, 269, 452, 761, 863, 906, 975
TspRI	CASTG	3 cut(s)	352, 449, 510
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	2 cut(s)	124, 223
XbaI	TCTAGA	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	5 cut(s)	416, 804, 1010, 1086, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.