Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001390

Physical Location & Seq

Genomic Coordinates Forward (+)

33336519 .. 33377258

Gene Structure 40740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGACAAATTGGAAGGTTTGTATGCAGAATTTGGTGGGGCAGTTCCTACTAGACCTGCATAGGACTTGGCATTTTCAATTGCAAGTACCATGGAGGAATGGTCACTTCATTGCAACTAGCTATGACAATGATGCACATCTAGATGAATATGATGTTGATCTTCTTCTAATAAACATAGCTACAAATTCCTTGAAAGGGGGACTTGCTAGTGAGGTTTGGGGTGATATACAGTTTGCAGCACTGCGTGCACTTTTGGCATCTTTCTTGTCTTCATCTCGTGTCCGCCCCCCTTACTTAGCTCAGGGTGTTGATCTTTTCTGTAGAGGTAATTCCTTTAAGAATATGGCAGCTTCCATACCAAAAAGCAAGGGTGGTACGTTTCTTCAAATGAAATTGGTTTACAATCAATTGACACCAATTTTCCTGTTTTTGCTTCAATGGAGTGATTGCTCGTCTTCATGTTTACTTGTCAGTTACTTGAATCTTTTCGACATAGTTGTATATAAGGTACGCTCAGATGGGAGGGCAAATATCTCGTCTTATGGAAGAAAAGCTACTACCAGTCAATTCTACAAAGTTATATTACCGTCCCTTCAGCGTCTCCATGGTGATTCCTTGGATGTGGATATCACCCAAGAGGAAGATCTAGAGATGGTTGTAAAAAAGAGATATGAGGATAAGATAAAGCTTTCTGATGTTGACTTGGAGAGAGAAAAGGAATGTGGTATCTGCTTAGAGCCTTGCACCAAAATGGTTTTGCCAAATTGCTGCCATGCCATGTGCATTAATTGCTACCGTGACTGGGAAAAGAACATTGGCATTCACATATGGTTCAATAAGTTTATAAAGGCCTCCCCTGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGTTCTATCTAGATATGAAGTTCGTCATATGCTTTGCTTCACAAGGTCGTTTCCTATCCCGAAATTTGCAACGCGTTATCAATGAGATCATATCTAAAGCAATGACAGCATTTTCTGCAACAGGCATGGATCCCTATAGGAAGAATTTGCGGATCTTAGAGCCAAGGGTTGCGAGCTTCTGGTGTGTGCTTAATCTAGAGGTTGTACATATTGAAGCAGCTATTTCTTTGTTCATTTCTAGGTTCAGAGGTTTGAAGTGTGAGTTTCAGGTGGAGCTGGCGAAGGTGCTGGTGGAGATGGGGCAGGCTCATCTGTTCGAGCATTGGGCTGAGCCGGGCGTCGACGATGACGAAAAGAAAGCCTTTTTTGATCAGGTGAGTCGGCTCAATTCAAGCTATCCAGGGGGTTTGACATCATATATCAAAACTGCTAGAGAACTGTTAGCGGATTCAAAAGCCGGAAAGAATCCATTTGATGGCTTTACACCTTCCGTTCCAACAGGTGAAACCTTGACTTTTGGTGATGATAGCTTTATGAGTTTTGAGGAAACTGGTGTCAAAGAAGTTCGGAAAGCTGCATTTGTTCTTGTTGCTGGAGGACTTGGGGAACGTCTGGGATACAACGGAATTAAGGTGGCTCTTCCTAGAGAGACGACCACAGGAACATGTTTTTTACAACATTACATTGAGACAATATTGGCTCTTCAAGATGCTAGCTGTAAACTTGCAGAAGGTGAATGCCAAACAAAAAGTCCTCTGGTTATAATGACATCAGATGACACACATTCTCGTACAGTAAAGCTTTTAGAGTCAAATTCTTATTTTGGAATGGAACCGAATCAAGTAAAGCTTTTAAAGCAGGAAAAAGTTGCATGCTTAGATGATAATGATGCGAGGCTTGCAGTAGACCCACGTAACAAGTACAGGATTCAGACCAAACCTCATGGACACGGTGACGTGCATTCACTACTCTACTCCAGTGGCCTTCTCAATGAATGGCGTGACGCTGGTTTGAGATGGGTTCTGTTCTTCCAAGATACAAATGGACTTCTGTTCAATGCAATTTCAGCGTCATTGGGTGTTAGTGCTACAAGACAGTACCATGTTAACTCCCTAGCTGTTCCGCGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGACTTACTCATGCTGATGGGAGATCAATGGTGATCAATGTGGAGTACAACCAGCTTGATCCACTGCTTAGAGCAACTGGATTTCCTGACGGTGATGTCAACTGTGAGACTGGCTATTCTCCTTTCCCTGGGAACATCAACCAATTAATCTTGGAACTTGGTCCGTACATTGAGGAGCTCACAAAAACAGGAGGTGCCATACAGGAGTTTGTTAACCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005886 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009360 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030424 GO:0030425 GO:0030880 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0036477 GO:0042575 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097447 GO:0097458 GO:0097659 GO:0097747 GO:0120025 GO:0120038 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

776

Amino Acids

87.27

Weight (kDa)

5.93

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	498 - 657	2.3e-15	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT3G28956 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950 AT5G62950
fragaria_vesca	FvH4_4g01070 FvH4_4g01070 FvH4_5g27570
malus_domestica	MD13G1198900.v1.1
prunus_persica	Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1 Prupe.1G020700_v2.0.a1
pyrus_communis	pycom13g17270
rosa_chinensis	RchiOBHm_Chr4g0387641 RchiOBHm_Chr6g0280701
rosa_laevigata	RLG00000010104 RLG00000013035
rosa_multiflora	Rmu_sc0000976.1_g000021 Rmu_sc0003953.1_g000006
rosa_roxburghii	Rroxscaffold_7G00187720
rosa_rugosa	Rorug03G0311800 Rorug03G0311900 Rorug03G0312000 Rorug03G0312100 Rorug06G0133900 Rorug06G0133900 Rorug06G0133900 Rorug06G0134000
rosa_samantha	Rh4AG017400 Rh4BG012200 Rh4CG018600 Rh4DG013200 Rh6AG246600 Rh6BG248900 Rh6CG250000 Rh6DG241500
rosa_wichuraiana	Rw4G001120 Rw6G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	845, 1712
AasI	GACNNNNNNGTC	1 cut(s)	2201
Acc36I	ACCTGC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	2300
AccB7I	CCANNNNNTGG	1 cut(s)	1424
AccI	GTMKAC	2 cut(s)	1290, 1854
AccII	CGCG	2 cut(s)	1023, 2074
AciI	CCGC	4 cut(s)	283, 1099, 1394, 2072
AclWI	GGATC	4 cut(s)	1073, 1086, 1109, 2159
AcsI	RAATTY	5 cut(s)	28, 184, 1012, 1093, 1762
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	1287
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	9 cut(s)	87, 376, 510, 1155, 1741, 1871, 2048, 2153, 2273
AfiI	CCNNNNNNNGG	4 cut(s)	195, 802, 1424, 2234
AflIII	ACRYGT	2 cut(s)	1021, 1613
AjiI	CACGTC	1 cut(s)	1906
AjnI	CCWGG	2 cut(s)	1348, 2233
AjuI	GAANNNNNNNTTGG	2 cut(s)	798, 830
Alw21I	GWGCWC	2 cut(s)	250, 2286
Alw26I	GTCTC	4 cut(s)	605, 1592, 1631, 2207
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	4 cut(s)	1073, 1086, 1109, 2159
AoxI	GGCC	4 cut(s)	849, 917, 923, 1930
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	5 cut(s)	236, 347, 768, 1166, 1523
ApoI	RAATTY	5 cut(s)	28, 184, 1012, 1093, 1762
ArsI	GACNNNNNNTTYG	4 cut(s)	521, 553, 1684, 1716
AseI	ATTAAT	2 cut(s)	786, 2252
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	2076
AspS9I	GGNCC	3 cut(s)	917, 932, 2267
AsuC2I	CCSGG	1 cut(s)	1284
AsuNHI	GCTAGC	1 cut(s)	1661
AvaII	GGWCC	2 cut(s)	932, 2267
BaeGI	GKGCMC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	1078
BanI	GGYRCC	1 cut(s)	2300
BanII	GRGCYC	1 cut(s)	2286
BarI	GAAGNNNNNNTAC	2 cut(s)	538, 570
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	261, 447
Bbv12I	GWGCWC	2 cut(s)	250, 2286
BbvI	GCAGC	5 cut(s)	248, 359, 755, 1178, 1510
BccI	CCATC	7 cut(s)	512, 646, 908, 1240, 1418, 1959, 2117
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciT130I	CCWGG	2 cut(s)	1350, 2235
BciVI	GTATCC	1 cut(s)	1559
BclI	TGATCA	2 cut(s)	1318, 2139
BcnI	CCSGG	1 cut(s)	1284
BcoDI	GTCTC	4 cut(s)	605, 1592, 1631, 2207
BfmI	CTRYAG	2 cut(s)	319, 1084
BfuAI	ACCTGC	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	1559
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	5 cut(s)	237, 348, 769, 1167, 1524
BlpI	GCTNAGC	1 cut(s)	1278
BlsI	GCNGC	5 cut(s)	238, 349, 770, 1168, 1525
Bme1390I	CCNGG	3 cut(s)	1284, 1350, 2235
Bme18I	GGWCC	2 cut(s)	932, 2267
BmgBI	CACGTC	1 cut(s)	1906
BmgT120I	GGNCC	3 cut(s)	917, 932, 2267
BmiI	GGNNCC	4 cut(s)	933, 1080, 1782, 2302
BmrFI	CCNGG	3 cut(s)	1284, 1350, 2235
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	4 cut(s)	121, 266, 1648, 1828
BmtI	GCTAGC	1 cut(s)	1665
BmuI	ACTGGG	1 cut(s)	811
BpiI	GAAGAC	2 cut(s)	261, 447
BpmI	CTGGAG	2 cut(s)	1563, 1909
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	1278
BpuMI	CCSGG	1 cut(s)	1284
BsaAI	YACGTR	1 cut(s)	1862
BsaBI	GATNNNNATC	2 cut(s)	135, 156
BsaHI	GRCGYC	1 cut(s)	1287
BsaJI	CCNNGG	8 cut(s)	89, 604, 615, 920, 1112, 1349, 2233, 2234
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 802, 1424, 2234
Bse1I	ACTGG	6 cut(s)	561, 806, 1504, 1926, 2188, 2221
Bse3DI	GCAATG	2 cut(s)	108, 1056
Bse8I	GATNNNNATC	2 cut(s)	135, 156
BseBI	CCWGG	2 cut(s)	1350, 2235
BseDI	CCNNGG	8 cut(s)	89, 604, 615, 920, 1112, 1349, 2233, 2234
BseGI	GGATG	3 cut(s)	625, 907, 919
BseJI	GATNNNNATC	2 cut(s)	135, 156
BseLI	CCNNNNNNNGG	4 cut(s)	195, 802, 1424, 2234
BseMI	GCAATG	2 cut(s)	108, 1056
BseMII	CTCAG	3 cut(s)	314, 528, 1269
BseNI	ACTGG	6 cut(s)	561, 806, 1504, 1926, 2188, 2221
BseRI	GAGGAG	1 cut(s)	2294
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	5 cut(s)	248, 359, 755, 1178, 1510
Bsh1236I	CGCG	2 cut(s)	1023, 2074
BshFI	GGCC	4 cut(s)	851, 919, 925, 1932
BshNI	GGYRCC	1 cut(s)	2300
BsiHKAI	GWGCWC	2 cut(s)	250, 2286
BsiSI	CCGG	2 cut(s)	1283, 1407
BslFI	GGGAC	2 cut(s)	213, 574
BslI	CCNNNNNNNGG	4 cut(s)	195, 802, 1424, 2234
BsmAI	GTCTC	4 cut(s)	605, 1592, 1631, 2207
BsmBI	CGTCTC	2 cut(s)	605, 1592
BsmFI	GGGAC	2 cut(s)	213, 574
BsmI	GAATGC	3 cut(s)	819, 1691, 1909
BsnI	GGCC	4 cut(s)	851, 919, 925, 1932
Bsp1286I	GDGCHC	2 cut(s)	250, 2286
Bsp1407I	TGTACA	1 cut(s)	1153
Bsp1720I	GCTNAGC	1 cut(s)	1278
Bsp19I	CCATGG	2 cut(s)	89, 604
BspACI	CCGC	4 cut(s)	283, 1099, 1394, 2072
BspANI	GGCC	4 cut(s)	851, 919, 925, 1932
BspCNI	CTCAG	3 cut(s)	313, 527, 1270
BspFNI	CGCG	2 cut(s)	1023, 2074
BspLI	GGNNCC	4 cut(s)	933, 1080, 1782, 2302
BspMI	ACCTGC	1 cut(s)	63
BspOI	GCTAGC	1 cut(s)	1665
BspPI	GGATC	4 cut(s)	1073, 1086, 1109, 2159
BspQI	GCTCTTC	2 cut(s)	1593, 1656
BspT107I	GGYRCC	1 cut(s)	2300
BsrDI	GCAATG	2 cut(s)	108, 1056
BsrGI	TGTACA	1 cut(s)	1153
BsrI	ACTGG	6 cut(s)	561, 806, 1504, 1926, 2188, 2221
BssECI	CCNNGG	8 cut(s)	89, 604, 615, 920, 1112, 1349, 2233, 2234
BssNI	GRCGYC	1 cut(s)	1287
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	5 cut(s)	89, 604, 615, 920, 1112
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	1350, 2235
Bst6I	CTCTTC	2 cut(s)	1593, 1656
BstACI	GRCGYC	1 cut(s)	1287
BstAPI	GCANNNNNTGC	3 cut(s)	245, 789, 1064
BstAUI	TGTACA	1 cut(s)	1153
BstBAI	YACGTR	1 cut(s)	1862
BstC8I	GCNNGC	7 cut(s)	246, 1123, 1227, 1254, 1663, 1822, 1848
BstDEI	CTNAG	8 cut(s)	295, 300, 514, 733, 1105, 1278, 1825, 2174
BstDSI	CCRYGG	2 cut(s)	89, 604
BstF5I	GGATG	3 cut(s)	625, 907, 919
BstFNI	CGCG	2 cut(s)	1023, 2074
BstHHI	GCGC	1 cut(s)	2076
BstMAI	GTCTC	4 cut(s)	605, 1592, 1631, 2207
BstMWI	GCNNNNNNNGC	9 cut(s)	245, 254, 789, 1055, 1064, 1804, 1847, 2015, 2087
BstNI	CCWGG	2 cut(s)	1350, 2235
BstNSI	RCATGY	2 cut(s)	1617, 1824
BstSCI	CCNGG	3 cut(s)	1282, 1348, 2233
BstSFI	CTRYAG	2 cut(s)	319, 1084
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	2 cut(s)	1023, 2074
BstV1I	GCAGC	5 cut(s)	248, 359, 755, 1178, 1510
BstV2I	GAAGAC	2 cut(s)	261, 447
BstX2I	RGATCY	3 cut(s)	643, 1078, 1101
BstYI	RGATCY	3 cut(s)	643, 1078, 1101
BsuI	GTATCC	1 cut(s)	1559
BsuRI	GGCC	4 cut(s)	851, 919, 925, 1932
BtgI	CCRYGG	2 cut(s)	89, 604
BtrI	CACGTC	1 cut(s)	1906
BtsCI	GGATG	3 cut(s)	625, 907, 919
BtsI	GCAGTG	2 cut(s)	239, 2168
BtsIMutI	CAGTG	3 cut(s)	239, 1933, 2168
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	7 cut(s)	246, 1123, 1227, 1254, 1663, 1822, 1848
CfoI	GCGC	1 cut(s)	2076
Cfr13I	GGNCC	3 cut(s)	917, 932, 2267
CseI	GACGC	4 cut(s)	587, 1276, 1961, 2007
Csp6I	GTAC	9 cut(s)	86, 375, 509, 1154, 1740, 1870, 2047, 2152, 2272
CviQI	GTAC	9 cut(s)	86, 375, 509, 1154, 1740, 1870, 2047, 2152, 2272
DdeI	CTNAG	8 cut(s)	295, 300, 514, 733, 1105, 1278, 1825, 2174
DraI	TTTAAA	1 cut(s)	1803
DraIII	CACNNNGTG	1 cut(s)	245
DrdI	GACNNNNNNGTC	1 cut(s)	2201
DseDI	GACNNNNNNGTC	1 cut(s)	2201
Eam1104I	CTCTTC	2 cut(s)	1593, 1656
EarI	CTCTTC	2 cut(s)	1593, 1656
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	2284
Eco130I	CCWWGG	5 cut(s)	89, 604, 615, 920, 1112
Eco147I	AGGCCT	2 cut(s)	851, 925
Eco24I	GRGCYC	1 cut(s)	2286
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	932, 2267
Eco53kI	GAGCTC	1 cut(s)	2284
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	2284
EcoO109I	RGGNCCY	1 cut(s)	932
EcoRII	CCWGG	2 cut(s)	1348, 2233
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	5 cut(s)	89, 604, 615, 920, 1112
EcoT38I	GRGCYC	1 cut(s)	2286
ErhI	CCWWGG	5 cut(s)	89, 604, 615, 920, 1112
Esp3I	CGTCTC	2 cut(s)	605, 1592
FalI	AAGNNNNNCTT	6 cut(s)	186, 218, 1295, 1327, 1782, 1814
FaqI	GGGAC	2 cut(s)	213, 574
FauNDI	CATATG	2 cut(s)	827, 977
FbaI	TGATCA	2 cut(s)	1318, 2139
FblI	GTMKAC	2 cut(s)	1290, 1854
Fnu4HI	GCNGC	5 cut(s)	237, 348, 769, 1167, 1524
FokI	GGATG	3 cut(s)	632, 914, 926
FriOI	GRGCYC	1 cut(s)	2286
Fsp4HI	GCNGC	5 cut(s)	237, 348, 769, 1167, 1524
GlaI	GCGC	1 cut(s)	2075
GluI	GCNGC	5 cut(s)	237, 348, 769, 1167, 1524
GsuI	CTGGAG	2 cut(s)	1563, 1909
HaeIII	GGCC	4 cut(s)	851, 919, 925, 1932
HapII	CCGG	2 cut(s)	1283, 1407
HgaI	GACGC	4 cut(s)	587, 1276, 1961, 2007
HhaI	GCGC	1 cut(s)	2076
Hin1I	GRCGYC	1 cut(s)	1287
Hin6I	GCGC	1 cut(s)	2074
HinP1I	GCGC	1 cut(s)	2074
HincII	GTYRAC	5 cut(s)	700, 1291, 2056, 2206, 2320
HindII	GTYRAC	5 cut(s)	700, 1291, 2056, 2206, 2320
HindIII	AAGCTT	4 cut(s)	686, 892, 1748, 1796
HinfI	GANTC	8 cut(s)	481, 611, 1327, 1397, 1414, 1757, 1786, 1876
HpaI	GTTAAC	2 cut(s)	2056, 2320
HpaII	CCGG	2 cut(s)	1283, 1407
Hpy188I	TCNGA	7 cut(s)	517, 694, 883, 1196, 1518, 1723, 1881
Hpy188III	TCNNGA	7 cut(s)	140, 647, 959, 1008, 1145, 1655, 2192
Hpy99I	CGWCG	2 cut(s)	1292, 1295
HpyAV	CCTTC	6 cut(s)	7, 602, 1225, 1446, 1673, 1943
HpyCH4IV	ACGT	4 cut(s)	377, 1558, 1861, 1905
HpyF10VI	GCNNNNNNNGC	9 cut(s)	245, 254, 789, 1055, 1064, 1804, 1847, 2015, 2087
HpyF3I	CTNAG	8 cut(s)	295, 300, 514, 733, 1105, 1278, 1825, 2174
HpySE526I	ACGT	4 cut(s)	377, 1558, 1861, 1905
Hsp92I	GRCGYC	1 cut(s)	1287
HspAI	GCGC	1 cut(s)	2074
Ksp22I	TGATCA	2 cut(s)	1318, 2139
KspAI	GTTAAC	2 cut(s)	2056, 2320
LguI	GCTCTTC	2 cut(s)	1593, 1656
LmnI	GCTCC	2 cut(s)	1222, 2281
Lsp1109I	GCAGC	5 cut(s)	248, 359, 755, 1178, 1510
LweI	GCATC	4 cut(s)	121, 266, 1648, 1828
MaeII	ACGT	4 cut(s)	377, 1558, 1861, 1905
MaeIII	GTNAC	6 cut(s)	101, 473, 797, 1862, 1901, 1949
MfeI	CAATTG	3 cut(s)	77, 407, 2091
MflI	RGATCY	3 cut(s)	643, 1078, 1101
MhlI	GDGCHC	2 cut(s)	250, 2286
MluI	ACGCGT	1 cut(s)	1021
MlyI	GAGTC	2 cut(s)	1336, 1766
MmeI	TCCRAC	1 cut(s)	1469
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	8 cut(s)	336, 786, 1140, 1578, 1802, 2055, 2252, 2319
MslI	CAYNNNNRTG	3 cut(s)	141, 749, 2121
MspI	CCGG	2 cut(s)	1283, 1407
MspR9I	CCNGG	3 cut(s)	1284, 1350, 2235
MunI	CAATTG	3 cut(s)	77, 407, 2091
Mva1269I	GAATGC	3 cut(s)	819, 1691, 1909
MvaI	CCWGG	2 cut(s)	1350, 2235
MvnI	CGCG	2 cut(s)	1023, 2074
MwoI	GCNNNNNNNGC	9 cut(s)	245, 254, 789, 1055, 1064, 1804, 1847, 2015, 2087
NciI	CCSGG	1 cut(s)	1284
NcoI	CCATGG	2 cut(s)	89, 604
NdeI	CATATG	2 cut(s)	827, 977
NheI	GCTAGC	1 cut(s)	1661
NlaIV	GGNNCC	4 cut(s)	933, 1080, 1782, 2302
NmuCI	GTSAC	4 cut(s)	101, 797, 1901, 1949
NspI	RCATGY	2 cut(s)	1617, 1824
PaeI	GCATGC	1 cut(s)	1824
PasI	CCCWGGG	1 cut(s)	2234
PceI	AGGCCT	2 cut(s)	851, 925
PciI	ACATGT	1 cut(s)	1613
PciSI	GCTCTTC	2 cut(s)	1593, 1656
PcsI	WCGNNNNNNNCGW	1 cut(s)	1296
PctI	GAATGC	3 cut(s)	819, 1691, 1909
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	6 cut(s)	481, 611, 1397, 1414, 1786, 1876
PflMI	CCANNNNNTGG	1 cut(s)	1424
PkrI	GCNGC	5 cut(s)	238, 349, 770, 1168, 1525
PleI	GAGTC	2 cut(s)	1335, 1765
PpsI	GAGTC	2 cut(s)	1335, 1765
Ppu21I	YACGTR	1 cut(s)	1862
PpuMI	RGGWCCY	1 cut(s)	932
PscI	ACATGT	1 cut(s)	1613
PshBI	ATTAAT	2 cut(s)	786, 2252
PsiI	TTATAA	2 cut(s)	845, 1712
Psp124BI	GAGCTC	1 cut(s)	2286
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	2 cut(s)	1348, 2233
PspGI	CCWGG	2 cut(s)	1348, 2233
PspN4I	GGNNCC	4 cut(s)	933, 1080, 1782, 2302
PspPI	GGNCC	3 cut(s)	917, 932, 2267
PspPPI	RGGWCCY	1 cut(s)	932
PsuI	RGATCY	3 cut(s)	643, 1078, 1101
RsaI	GTAC	9 cut(s)	87, 376, 510, 1155, 1741, 1871, 2048, 2153, 2273
RsaNI	GTAC	9 cut(s)	86, 375, 509, 1154, 1740, 1870, 2047, 2152, 2272
RseI	CAYNNNNRTG	3 cut(s)	141, 749, 2121
SacI	GAGCTC	1 cut(s)	2286
SalI	GTCGAC	1 cut(s)	1289
SapI	GCTCTTC	2 cut(s)	1593, 1656
SaqAI	TTAA	8 cut(s)	336, 786, 1140, 1578, 1802, 2055, 2252, 2319
SatI	GCNGC	5 cut(s)	237, 348, 769, 1167, 1524
Sau96I	GGNCC	3 cut(s)	917, 932, 2267
SchI	GAGTC	2 cut(s)	1336, 1766
ScrFI	CCNGG	3 cut(s)	1284, 1350, 2235
SduI	GDGCHC	2 cut(s)	250, 2286
SfaNI	GCATC	4 cut(s)	121, 266, 1648, 1828
SfcI	CTRYAG	2 cut(s)	319, 1084
SgrDI	CGTCGACG	1 cut(s)	1289
SinI	GGWCC	2 cut(s)	932, 2267
SmiMI	CAYNNNNRTG	3 cut(s)	141, 749, 2121
SphI	GCATGC	1 cut(s)	1824
SseBI	AGGCCT	2 cut(s)	851, 925
SsiI	CCGC	4 cut(s)	283, 1099, 1394, 2072
SspI	AATATT	1 cut(s)	1644
SstI	GAGCTC	1 cut(s)	2286
StuI	AGGCCT	2 cut(s)	851, 925
StyD4I	CCNGG	3 cut(s)	1282, 1348, 2233
StyI	CCWWGG	5 cut(s)	89, 604, 615, 920, 1112
TaiI	ACGT	4 cut(s)	380, 1561, 1864, 1908
TaqI	TCGA	3 cut(s)	489, 1266, 1290
TatI	WGTACW	3 cut(s)	1153, 1869, 2151
TfiI	GAWTC	6 cut(s)	481, 611, 1397, 1414, 1786, 1876
Tru1I	TTAA	8 cut(s)	336, 786, 1140, 1578, 1802, 2055, 2252, 2319
Tru9I	TTAA	8 cut(s)	336, 786, 1140, 1578, 1802, 2055, 2252, 2319
TscAI	CASTG	3 cut(s)	246, 1933, 2175
TseFI	GTSAC	4 cut(s)	101, 797, 1901, 1949
TseI	GCWGC	5 cut(s)	236, 347, 768, 1166, 1523
Tsp45I	GTSAC	4 cut(s)	101, 797, 1901, 1949
TspDTI	ATGAA	8 cut(s)	97, 159, 261, 404, 447, 980, 1171, 1956
TspGWI	ACGGA	3 cut(s)	1429, 1587, 2259
TspRI	CASTG	3 cut(s)	246, 1933, 2175
Van91I	CCANNNNNTGG	1 cut(s)	1424
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	932, 2267
VspI	ATTAAT	2 cut(s)	786, 2252
XapI	RAATTY	5 cut(s)	28, 184, 1012, 1093, 1762
XbaI	TCTAGA	4 cut(s)	139, 646, 958, 1144
XceI	RCATGY	2 cut(s)	1617, 1824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1988
XmiI	GTMKAC	2 cut(s)	1290, 1854
XmnI	GAANNNNTTC	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.