Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0022339

Physical Location & Seq

Genomic Coordinates Reverse (-)

1692938 .. 1693387

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G024300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCATGATAACTCTACCAATAATATTTTTTCTAGTATTCTATGGAATCTCCAATCTTTCATTGCTCATCGTGTACCTCATACTTCGGTTCTGCAGTGGTGGAAGGCACGTTGATGATCTTGAAGCGCAATTAACAAATCGATGGCCGTCAAATCTTTATCATCGAGCTCCTTATTCAAATTACCATGCCAGATATATTGCAGTGGTGGCAGAGGAAACGCCGCCACCGCAGGCATCAACAGTCTTCACGTATAGAACTGATCAAAGCTTCTCTGCTACTACTGCTGATGAGTGTGTAATTTGCTTGGACGAGTTTATGGAGGGGCAAAAGTGCAGGTTGCTTGCTAACTGTAACCATTCGTTTCACAAGGCATGCATTGATGAATGGTTAAGCACCTGGAAAAGCCGCTGTCCCCTTTGCCGTGCTACTGTTCAAAATATATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

6.49

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022339)

Species	Orthologous Gene IDs
malus_domestica	MD15G1350600.v1.1
prunus_persica	Prupe.1G024300_v2.0.a1 Prupe.6G077200_v2.0.a1
pyrus_communis	pycom03g07440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	327
AciI	CCGC	3 cut(s)	224, 230, 409
AcoI	YGGCCR	2 cut(s)	3, 146
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	125, 180, 437
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	170, 270
AluI	AGCT	2 cut(s)	170, 270
Alw21I	GWGCWC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	3, 146
AspLEI	GCGC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	2 cut(s)	133, 408
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	327
BisI	GCNGC	2 cut(s)	224, 409
BlsI	GCNGC	2 cut(s)	225, 410
Bme1390I	CCNGG	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	238
Bsa29I	ATCGAT	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	5, 148
BshVI	ATCGAT	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	5, 148
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	118, 262
BspACI	CCGC	3 cut(s)	224, 230, 409
BspANI	GGCC	2 cut(s)	5, 148
BspDI	ATCGAT	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	62
BssMI	GATC	2 cut(s)	118, 262
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	3 cut(s)	244, 353, 433
BstBAI	YACGTR	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	234, 345, 376
BstDEI	CTNAG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	121, 265
BstMBI	GATC	2 cut(s)	118, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 229, 284
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	5, 148
BsuTUI	ATCGAT	1 cut(s)	142
BtsI	GCAGTG	2 cut(s)	103, 210
BtsIMutI	CAGTG	2 cut(s)	103, 210
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	234, 345, 376
CfoI	GCGC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	7, 188, 375
CviJI	RGCY	5 cut(s)	5, 148, 170, 270, 408
CviKI_1	RGCY	5 cut(s)	5, 148, 170, 270, 408
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	2 cut(s)	120, 264
DpnII	GATC	2 cut(s)	118, 262
EaeI	YGGCCR	2 cut(s)	3, 146
Ecl136II	GAGCTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	3 cut(s)	10, 191, 378
FaiI	YATR	9 cut(s)	8, 45, 83, 189, 198, 255, 320, 376, 443
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	3 cut(s)	6, 187, 374
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	224, 409
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	224, 409
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	224, 409
HaeIII	GGCC	2 cut(s)	5, 148
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	10, 191, 378
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	3 cut(s)	244, 353, 433
HpyCH4IV	ACGT	2 cut(s)	111, 251
HpyCH4V	TGCA	4 cut(s)	96, 203, 336, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 229, 284
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	111, 251
Hsp92II	CATG	3 cut(s)	10, 191, 378
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	118, 262
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	205, 218, 322, 385, 412
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	111, 251
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	120, 264
MboI	GATC	2 cut(s)	118, 262
MboII	GAAGA	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	131, 181, 300
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	89, 208, 316
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	134, 392
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	209, 229, 284
NdeII	GATC	2 cut(s)	118, 262
NlaIII	CATG	3 cut(s)	10, 191, 378
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	225, 410
Ppu21I	YACGTR	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	134, 392
SatI	GCNGC	2 cut(s)	224, 409
Sau3AI	GATC	2 cut(s)	118, 262
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	81, 114, 172, 254, 272, 341, 401
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	114
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	3 cut(s)	131, 181, 300
SsiI	CCGC	3 cut(s)	224, 230, 409
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	3 cut(s)	244, 353, 433
TaiI	ACGT	2 cut(s)	114, 254
TaqI	TCGA	2 cut(s)	142, 166
TasI	AATT	3 cut(s)	131, 181, 300
TauI	GCSGC	2 cut(s)	226, 411
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	134, 392
Tru9I	TTAA	2 cut(s)	134, 392
TscAI	CASTG	2 cut(s)	103, 210
TspDTI	ATGAA	2 cut(s)	51, 399
TspRI	CASTG	2 cut(s)	103, 210
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.