Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0022339

Physical Location & Seq

Genomic Coordinates Reverse (-)

5949264 .. 5950046

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCCGAAACATTTTCTTTCAAATAATCCACGTAGTGATAGATTCTTGCAAGCTTACTTAGTTTGGTCAAACGTCCACTATACGCCTCTTGTAAACGAGTATCCACCCATGTTATCCGCGGCTCCTCCTCCGCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCACCATCATCAATAGCATCAGAATTAGTACACATAATATTGCGAGTAACCTTGCCCTTAACCATCATCTATGTCTTTCTACTGTACTGTAAAAGGCAAAATAGCCCAACTGATGAACAAACCCAAGATCTTGAAGCACAAACACCAGAACAAGCCTCGACGGTTTTCACATATACAAGGAATAGTTGCCGAAGAAGTGAAAGCTGCACTTGTAGTGATCAAGATCAGGAGTATTGTTCAATTTGCTTCGAGGAGTTTAAGGATGGGGACGTATGCCGGCTGACCACGTGTAACCACATGTATCACCAGAAATGCATCAACGAATGGCTGCCAAGGAATAGGCACTGTCCCCTTTGTCGTGCTTCGGTTCGCGGTGCGTGTACTCGGAATTGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

188

Amino Acids

21.39

Weight (kDa)

6.96

Isoelectric Point (pI)

72.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022339)

Species	Orthologous Gene IDs
malus_domestica	MD15G1350600.v1.1
prunus_persica	Prupe.1G024300_v2.0.a1 Prupe.6G077200_v2.0.a1
pyrus_communis	pycom03g07440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	119, 537
AciI	CCGC	4 cut(s)	117, 119, 131, 537
AcvI	CACGTG	1 cut(s)	453
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	195, 251, 547
AflIII	ACRYGT	2 cut(s)	452, 462
AgsI	TTSAA	3 cut(s)	21, 299, 405
AluBI	AGCT	2 cut(s)	53, 369
AluI	AGCT	2 cut(s)	53, 369
ApeKI	GCWGC	2 cut(s)	369, 493
AsuHPI	GGTGA	1 cut(s)	461
BbrPI	CACGTG	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	356, 480
BccI	CCATC	3 cut(s)	178, 236, 422
BciVI	GTATCC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	382
BfaI	CTAG	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	3 cut(s)	120, 370, 494
BlsI	GCNGC	3 cut(s)	121, 371, 495
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	2 cut(s)	191, 489
BsaAI	YACGTR	2 cut(s)	32, 453
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	117, 497
Bse118I	RCCGGY	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	117, 497
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	387
BseRI	GAGGAG	8 cut(s)	114, 117, 129, 132, 141, 144, 153, 431
BseXI	GCAGC	2 cut(s)	356, 480
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	119, 537
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	2 cut(s)	446, 498
BsmFI	GGGAC	2 cut(s)	446, 498
Bsp143I	GATC	3 cut(s)	292, 382, 388
BspACI	CCGC	4 cut(s)	117, 119, 131, 537
BspFNI	CGCG	2 cut(s)	119, 537
BspLI	GGNNCC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	117, 497
BssMI	GATC	3 cut(s)	292, 382, 388
BssT1I	CCWWGG	1 cut(s)	497
Bst4CI	ACNGT	4 cut(s)	249, 254, 328, 512
Bst6I	CTCTTC	2 cut(s)	150, 162
BstBAI	YACGTR	2 cut(s)	32, 453
BstC8I	GCNNGC	2 cut(s)	51, 443
BstDEI	CTNAG	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	2 cut(s)	119, 537
BstKTI	GATC	3 cut(s)	295, 385, 391
BstMBI	GATC	3 cut(s)	292, 382, 388
BstNSI	RCATGY	1 cut(s)	466
BstUI	CGCG	2 cut(s)	119, 537
BstV1I	GCAGC	2 cut(s)	356, 480
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	51, 443
Cfr10I	RCCGGY	1 cut(s)	441
Cfr42I	CCGCGG	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	194, 250, 546
CviAII	CATG	2 cut(s)	109, 463
CviJI	RGCY	8 cut(s)	53, 122, 270, 320, 369, 445, 493, 561
CviKI_1	RGCY	8 cut(s)	53, 122, 270, 320, 369, 445, 493, 561
CviQI	GTAC	3 cut(s)	194, 250, 546
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	3 cut(s)	294, 384, 390
DpnII	GATC	3 cut(s)	292, 382, 388
DraIII	CACNNNGTG	1 cut(s)	35
Eam1104I	CTCTTC	2 cut(s)	150, 162
EarI	CTCTTC	2 cut(s)	150, 162
Eco130I	CCWWGG	1 cut(s)	497
Eco72I	CACGTG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	2 cut(s)	112, 466
FaiI	YATR	8 cut(s)	81, 110, 200, 237, 337, 339, 439, 464
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	2 cut(s)	446, 498
FatI	CATG	2 cut(s)	108, 462
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	120, 370, 494
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	120, 370, 494
FspBI	CTAG	1 cut(s)	562
GluI	GCNGC	3 cut(s)	120, 370, 494
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	2 cut(s)	112, 466
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	4 cut(s)	76, 94, 196, 546
Hpy188I	TCNGA	2 cut(s)	187, 552
Hpy188III	TCNNGA	3 cut(s)	296, 386, 392
Hpy8I	GTNNAC	4 cut(s)	76, 94, 196, 546
Hpy99I	CGWCG	1 cut(s)	328
HpyCH4III	ACNGT	4 cut(s)	249, 254, 328, 512
HpyCH4IV	ACGT	4 cut(s)	31, 72, 435, 452
HpyCH4V	TGCA	3 cut(s)	49, 372, 480
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	4 cut(s)	31, 72, 435, 452
Hsp92II	CATG	2 cut(s)	112, 466
KroI	GCCGGC	1 cut(s)	441
KroNI	GCCGGC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	292, 382, 388
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	4 cut(s)	324, 377, 455, 485
Lsp1109I	GCAGC	2 cut(s)	356, 480
LweI	GCATC	2 cut(s)	191, 489
MaeI	CTAG	1 cut(s)	562
MaeII	ACGT	4 cut(s)	31, 72, 435, 452
MaeIII	GTNAC	2 cut(s)	211, 455
MalI	GATC	3 cut(s)	294, 384, 390
MboI	GATC	3 cut(s)	292, 382, 388
MboII	GAAGA	3 cut(s)	137, 149, 369
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	3 cut(s)	188, 405, 553
Mph1103I	ATGCAT	1 cut(s)	482
MroNI	GCCGGC	1 cut(s)	441
MseI	TTAA	2 cut(s)	224, 423
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	442
MvnI	CGCG	2 cut(s)	119, 537
NaeI	GCCGGC	1 cut(s)	443
NdeII	GATC	3 cut(s)	292, 382, 388
NgoMIV	GCCGGC	1 cut(s)	441
NlaIII	CATG	2 cut(s)	112, 466
NlaIV	GGNNCC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	482
NspI	RCATGY	1 cut(s)	466
PciI	ACATGT	1 cut(s)	462
PdiI	GCCGGC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	121, 371, 495
PmaCI	CACGTG	1 cut(s)	453
PmlI	CACGTG	1 cut(s)	453
Ppu21I	YACGTR	2 cut(s)	32, 453
PscI	ACATGT	1 cut(s)	462
PspCI	CACGTG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	3 cut(s)	195, 251, 547
RsaNI	GTAC	3 cut(s)	194, 250, 546
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	224, 423
SatI	GCNGC	3 cut(s)	120, 370, 494
Sau3AI	GATC	3 cut(s)	292, 382, 388
SetI	ASST	7 cut(s)	34, 55, 75, 218, 371, 438, 455
SfaNI	GCATC	2 cut(s)	191, 489
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	188, 405, 553
SsiI	CCGC	4 cut(s)	117, 119, 131, 537
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	4 cut(s)	249, 254, 328, 512
TaiI	ACGT	4 cut(s)	34, 75, 438, 455
TaqI	TCGA	2 cut(s)	323, 414
TasI	AATT	3 cut(s)	188, 405, 553
TatI	WGTACW	3 cut(s)	193, 249, 545
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	224, 423
Tru9I	TTAA	2 cut(s)	224, 423
TscAI	CASTG	1 cut(s)	515
TseI	GCWGC	2 cut(s)	369, 493
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	515
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.