Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0022339

Physical Location & Seq

Genomic Coordinates Reverse (-)

5278450 .. 5280495

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G077200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCAAATCCTTGTTTTCGTCTTATTTCGACCAGCGAAGACTGCGTGATGCCTCTCCCTCCTCTGCCTCCATCATCACCTTCAATTATTGATAATCCTAGGCTAAGGCTTGCTGATATGGTTGGTTTAGGTTTAATGCTAGCATGGTTTGGCCTCTTTGCGGCCTTTTGTTTCCTCAAATTTTGTAATAGGCCCAATGATAACGTTGTCGATCTCGAAGCACAAACGGATCCCCCGCAGAATCCCCCGCAGACCACAATGGTCTTCACGTGTAGAATCGAAAGCAGCAACAACAACAACAGCCGCAATCTTAATACTGATGATGAGGATCTTCATCAGTGTTCAATTTGCTTGGAGGAGTTTAAGGATGGGGAAGAGTGTCGGTTGCTTGCTAACTGCAAGCATTCGTTTCACAAACGGTGCGTTGATAAGTGGCTAACCAACAAGGAAAGCAAACCACCATGTCCTCTTTGTCGTGCTTCTGTTCAAAGCATACAAACCGAACAAGAGAATCAAGTAGACAGTACTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

178

Amino Acids

19.94

Weight (kDa)

4.92

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022339)

Species	Orthologous Gene IDs
malus_domestica	MD15G1350600.v1.1
prunus_persica	Prupe.1G024300_v2.0.a1 Prupe.6G077200_v2.0.a1
pyrus_communis	pycom03g07440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	4 cut(s)	161, 236, 248, 304
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	3 cut(s)	224, 237, 336
AcsI	RAATTY	1 cut(s)	179
AcvI	CACGTG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	84, 345, 488
AlwI	GGATC	3 cut(s)	224, 237, 336
AoxI	GGCC	3 cut(s)	151, 162, 191
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	179
AspA2I	CCTAGG	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	69
AsuNHI	GCTAGC	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	45, 256
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	79, 362
BfaI	CTAG	3 cut(s)	99, 140, 532
BisI	GCNGC	3 cut(s)	162, 286, 304
BlnI	CCTAGG	1 cut(s)	98
BlsI	GCNGC	3 cut(s)	163, 287, 305
BmcAI	AGTACT	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	45, 256
Bpu10I	CCTNAGC	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	270
BsaBI	GATNNNNATC	2 cut(s)	327, 333
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse8I	GATNNNNATC	2 cut(s)	327, 333
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	2 cut(s)	327, 333
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseRI	GAGGAG	2 cut(s)	51, 371
BseXI	GCAGC	1 cut(s)	297
BshFI	GGCC	3 cut(s)	153, 164, 193
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	153, 164, 193
Bsp143I	GATC	3 cut(s)	211, 229, 328
BspACI	CCGC	4 cut(s)	161, 236, 248, 304
BspANI	GGCC	3 cut(s)	153, 164, 193
BspLI	GGNNCC	1 cut(s)	231
BspOI	GCTAGC	1 cut(s)	143
BspPI	GGATC	3 cut(s)	224, 237, 336
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	3 cut(s)	211, 229, 328
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	420, 524
Bst6I	CTCTTC	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	4 cut(s)	111, 141, 390, 401
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	3 cut(s)	214, 232, 331
BstMBI	GATC	3 cut(s)	211, 229, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	2 cut(s)	45, 256
BstX2I	RGATCY	2 cut(s)	229, 328
BstYI	RGATCY	2 cut(s)	229, 328
BsuRI	GGCC	3 cut(s)	153, 164, 193
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	4 cut(s)	111, 141, 390, 401
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	2 cut(s)	144, 462
CviJI	RGCY	7 cut(s)	103, 109, 153, 164, 193, 303, 436
CviKI_1	RGCY	7 cut(s)	103, 109, 153, 164, 193, 303, 436
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	3 cut(s)	213, 231, 330
DpnII	GATC	3 cut(s)	211, 229, 328
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	2 cut(s)	147, 465
FaiI	YATR	4 cut(s)	119, 145, 463, 494
FatI	CATG	2 cut(s)	143, 461
FauI	CCCGC	2 cut(s)	243, 255
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	162, 286, 304
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	162, 286, 304
FspBI	CTAG	3 cut(s)	99, 140, 532
GluI	GCNGC	3 cut(s)	162, 286, 304
HaeIII	GGCC	3 cut(s)	153, 164, 193
Hin1II	CATG	2 cut(s)	147, 465
HinfI	GANTC	3 cut(s)	241, 276, 511
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	2 cut(s)	420, 524
HpyCH4IV	ACGT	2 cut(s)	204, 269
HpyCH4V	TGCA	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	2 cut(s)	204, 269
Hsp92II	CATG	2 cut(s)	147, 465
Kzo9I	GATC	3 cut(s)	211, 229, 328
LpnPI	CCDG	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	3 cut(s)	99, 140, 532
MaeII	ACGT	2 cut(s)	204, 269
MalI	GATC	3 cut(s)	213, 231, 330
MboI	GATC	3 cut(s)	211, 229, 328
MboII	GAAGA	4 cut(s)	50, 256, 323, 386
MflI	RGATCY	2 cut(s)	229, 328
MluCI	AATT	3 cut(s)	84, 179, 345
MnlI	CCTC	9 cut(s)	63, 69, 72, 78, 164, 185, 319, 349, 477
MseI	TTAA	3 cut(s)	134, 312, 363
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	211, 229, 328
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	147, 465
NlaIV	GGNNCC	1 cut(s)	231
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	241, 276, 511
PkrI	GCNGC	3 cut(s)	163, 287, 305
PmaCI	CACGTG	1 cut(s)	270
PmlI	CACGTG	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	270
Psp1406I	AACGTT	1 cut(s)	204
PspCI	CACGTG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	2 cut(s)	229, 328
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	134, 312, 363
SatI	GCNGC	3 cut(s)	162, 286, 304
Sau3AI	GATC	3 cut(s)	211, 229, 328
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	526
SetI	ASST	4 cut(s)	82, 133, 207, 272
SfaNI	GCATC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	84, 179, 345
SsiI	CCGC	4 cut(s)	161, 236, 248, 304
SspMI	CTAG	3 cut(s)	99, 140, 532
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	420, 524
TaiI	ACGT	2 cut(s)	207, 272
TaqI	TCGA	4 cut(s)	29, 210, 216, 279
TasI	AATT	3 cut(s)	84, 179, 345
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	164, 306
TfiI	GAWTC	3 cut(s)	241, 276, 511
Tru1I	TTAA	3 cut(s)	134, 312, 363
Tru9I	TTAA	3 cut(s)	134, 312, 363
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	99, 140, 532
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.