Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008858

Physical Location & Seq

Genomic Coordinates Forward (+)

3178582 .. 3180800

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAAGCGCTTGGAGGCTTTTGTTTTCTTTGTTTTGCATTCAAATCCTTGCAACAAGTGTGGTTTCAAGGAATATAGTGAGTGTGCGGCATGACGAGGAGGGAAAGAACTTAGCTTTTAGGAAGGGAGGGGGATTTGGCGGTGAAGGTGGTGGTTTTGGAGGCGTCGTTGGTAGTGGTGTTGGGAGTGGTCTTGGTGGTGGCATTGGTAAAAGTGGCGAGGTACGCAATGGGGGCTTTGGAAAAGGACGACGCATTCTCAAGGGAGGTGGGGGCGGGGGTGGTGGTGGTGGTGGTGGTCGTGGTGGAGGAAGATCTGGTGGTGGCAAGCATGGTGGATTCCATGGTGGTGTACATGGTGGAGCTGGGGGTAGAGTTCATAGCGGTGCTGGTGGTGGATTTGGAAAAGGTGCAATACAACAGACAGTCAGTCAAAAGCTCGCTGTTGTGTCCAAACCAACCGGCTGCTGGTGTTTCAAGCCATCGGGTGCTCCTGTTTGCCAAGCACATGGTGGCACCTGCAGTGTCACTTCCACATTTTGTGTATTGGAAGCAAAAGCTTTGCCTGACTTGGTAAGGCTCTTATCCGGGGAGGTTTACGAAACTGCCATCGAAGCAATTCAAACTCTCTCCACATTGGTTCTTGAAGCCTCTCCTCAAAGAGGAGCCAATGTCTTGCATGAGGCTGATGCCATAAAGCCTACATTGGAGATCTTGACTTGGGGAACAAATTCTCTCAAGGAAGAGGTATTGAGTCTACTTGAAAAGGTTTTCTTGTCAAAGGAGATGGTTGAATTTTATGGATCAACTGCCAGATTAAGTCTTGCTGGTCTAACTGGCAGTAATTTTCATGAGGATGGTCGATGCTCGTCCAAAATTAATTATCTTTCTTCCAAATTAATTAAGTTTTTTATGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

307

Amino Acids

30.97

Weight (kDa)

9.47

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120
malus_domestica	MD13G1217600.v1.1
prunus_persica	Prupe.1G044400_v2.0.a1 Prupe.1G044500_v2.0.a1 Prupe.5G067700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394491
rosa_laevigata	RLG00000009694
rosa_multiflora	Rmu_sc0001819.1_g000002 Rmu_sc0005424.1_g000022 Rmu_sc0013311.1_g000003
rosa_roxburghii	Rroxscaffold_5G00339540
rosa_rugosa	Rorug03G0365600.1
rosa_samantha	Rh4BG050300 Rh4CG056700 Rh4DG049400
rosa_wichuraiana	Rw0G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	757
AciI	CCGC	4 cut(s)	88, 141, 276, 384
AclWI	GGATC	1 cut(s)	811
AcsI	RAATTY	2 cut(s)	730, 794
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	2 cut(s)	225, 354
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	468, 662
AgsI	TTSAA	7 cut(s)	44, 69, 478, 623, 647, 764, 794
AhdI	GACNNNNNGTC	1 cut(s)	429
AluBI	AGCT	4 cut(s)	116, 365, 439, 560
AluI	AGCT	4 cut(s)	116, 365, 439, 560
Alw21I	GWGCWC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	811
Aor51HI	AGCGCT	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	2 cut(s)	730, 794
AseI	ATTAAT	2 cut(s)	879, 899
Asp700I	GAANNNNTTC	2 cut(s)	618, 730
AspLEI	GCGC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	4 cut(s)	490, 617, 781, 851
BcnI	CCSGG	1 cut(s)	589
BfmI	CTRYAG	1 cut(s)	520
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	527
BglII	AGATCT	2 cut(s)	314, 711
BisI	GCNGC	2 cut(s)	89, 466
BlsI	GCNGC	2 cut(s)	90, 467
Bme1390I	CCNGG	1 cut(s)	589
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmiI	GGNNCC	2 cut(s)	517, 667
BmrFI	CCNGG	1 cut(s)	589
BmsI	GCATC	2 cut(s)	679, 854
BpuEI	CTTGAG	2 cut(s)	245, 722
BpuMI	CCSGG	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	343, 588
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 657, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 662
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	841
Bse3DI	GCAATG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	343, 588
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	468, 662
BseMI	GCAATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	3 cut(s)	113, 645, 678
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	462, 588
BslI	CCNNNNNNNGG	2 cut(s)	468, 662
BsmI	GAATGC	2 cut(s)	39, 255
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	3 cut(s)	314, 711, 803
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	4 cut(s)	88, 141, 276, 384
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	2 cut(s)	517, 667
BspMAI	CTGCAG	1 cut(s)	524
BspMI	ACCTGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	811
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	841
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	343, 588
BssMI	GATC	3 cut(s)	314, 711, 803
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	738
BstACI	GRCGYC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	329, 441
BstDEI	CTNAG	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	343
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	862
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	317, 714, 806
BstMBI	GATC	3 cut(s)	314, 711, 803
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 234, 614
BstSCI	CCNGG	1 cut(s)	587
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	314, 711
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	2 cut(s)	314, 711
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	862
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	329, 441
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	461
CseI	GACGC	2 cut(s)	154, 261
Csp6I	GTAC	2 cut(s)	224, 353
CspCI	CAANNNNNGTGG	6 cut(s)	42, 77, 250, 285, 316, 351
CviAII	CATG	7 cut(s)	92, 332, 344, 356, 509, 680, 851
CviQI	GTAC	2 cut(s)	224, 353
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	3 cut(s)	316, 713, 805
DpnII	GATC	3 cut(s)	314, 711, 803
DraIII	CACNNNGTG	1 cut(s)	512
DriI	GACNNNNNGTC	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	738
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	7 cut(s)	95, 335, 347, 359, 512, 683, 854
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FatI	CATG	7 cut(s)	91, 331, 343, 355, 508, 679, 850
FauI	CCCGC	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	2 cut(s)	89, 466
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	2 cut(s)	89, 466
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	89, 466
GsaI	CCCAGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	12
HapII	CCGG	2 cut(s)	462, 588
HgaI	GACGC	2 cut(s)	154, 261
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	7 cut(s)	95, 335, 347, 359, 512, 683, 854
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	2 cut(s)	339, 754
HpaII	CCGG	2 cut(s)	462, 588
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	353, 598, 758
Hpy188III	TCNNGA	3 cut(s)	644, 715, 851
Hpy8I	GTNNAC	3 cut(s)	353, 598, 758
Hpy99I	CGWCG	2 cut(s)	170, 255
HpyAV	CCTTC	2 cut(s)	118, 140
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	39, 53, 413, 522, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 234, 614
HpyF3I	CTNAG	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	95, 335, 347, 359, 512, 683, 854
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	314, 711, 803
LmnI	GCTCC	3 cut(s)	362, 496, 665
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	2 cut(s)	679, 854
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	316, 713, 805
MboI	GATC	3 cut(s)	314, 711, 803
MboII	GAAGA	3 cut(s)	324, 755, 882
MflI	RGATCY	2 cut(s)	314, 711
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	8 cut(s)	618, 730, 794, 844, 876, 880, 896, 900
MlyI	GAGTC	1 cut(s)	763
MroXI	GAANNNNTTC	2 cut(s)	618, 730
MseI	TTAA	5 cut(s)	818, 879, 899, 903, 919
MslI	CAYNNNNRTG	3 cut(s)	348, 384, 855
MspI	CCGG	2 cut(s)	462, 588
MspR9I	CCNGG	1 cut(s)	589
Mva1269I	GAATGC	2 cut(s)	39, 255
MwoI	GCNNNNNNNGC	3 cut(s)	225, 234, 614
NciI	CCSGG	1 cut(s)	589
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	3 cut(s)	314, 711, 803
NlaIII	CATG	7 cut(s)	95, 335, 347, 359, 512, 683, 854
NlaIV	GGNNCC	2 cut(s)	517, 667
NmuCI	GTSAC	1 cut(s)	526
PacI	TTAATTAA	1 cut(s)	903
PagI	TCATGA	1 cut(s)	850
PaqCI	CACCTGC	1 cut(s)	527
PctI	GAATGC	2 cut(s)	39, 255
PdmI	GAANNNNTTC	2 cut(s)	618, 730
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	90, 467
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
PshBI	ATTAAT	2 cut(s)	879, 899
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	517, 667
PstI	CTGCAG	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	314, 711
RsaI	GTAC	2 cut(s)	225, 354
RsaNI	GTAC	2 cut(s)	224, 353
RseI	CAYNNNNRTG	3 cut(s)	348, 384, 855
SaqAI	TTAA	5 cut(s)	818, 879, 899, 903, 919
SatI	GCNGC	2 cut(s)	89, 466
Sau3AI	GATC	3 cut(s)	314, 711, 803
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	2 cut(s)	679, 854
SfcI	CTRYAG	1 cut(s)	520
SmiMI	CAYNNNNRTG	3 cut(s)	348, 384, 855
SmlI	CTYRAG	2 cut(s)	260, 737
SmoI	CTYRAG	2 cut(s)	260, 737
Sse9I	AATT	8 cut(s)	618, 730, 794, 844, 876, 880, 896, 900
SsiI	CCGC	4 cut(s)	88, 141, 276, 384
StyD4I	CCNGG	1 cut(s)	587
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	612, 862
TasI	AATT	8 cut(s)	618, 730, 794, 844, 876, 880, 896, 900
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	5 cut(s)	818, 879, 899, 903, 919
Tru9I	TTAA	5 cut(s)	818, 879, 899, 903, 919
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	368, 839
TspRI	CASTG	1 cut(s)	529
VspI	ATTAAT	2 cut(s)	879, 899
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	730, 794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	465, 509
XmiI	GTMKAC	1 cut(s)	757
XmnI	GAANNNNTTC	2 cut(s)	618, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.