Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00117

Orthogroup ID

OG0008858

Physical Location & Seq

Genomic Coordinates Reverse (-)

87 .. 1324

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTGCGCAGTGGGAAATCACTTGCTTTGTTTTCTTTGCTTTGCATTCAGGTTCTTGCAGTGAGTGTTGTTGCGAGGAATGTAGTGAGTGTGAGGAACGATGAGGAGGAAAAGAACTTGGGCACTGGGTTTGGCAGCGGAGCTGGAGGTGGGTTTGGAGGTGGAGCAGGTGGGGGTGGTGGTGGTGGTTTTGGAGGCGGCTCTGGCGGTGGTGCTGGAGGGGTGGTGGTGGCTTCGGAGGCGGTAGTGGTGGTGGCTTTGGTGGTGGAGCTGGAGGAGGTGGTGGAGCCGGAGGCGGTGGTGGCTTTGGTGGTGGGTAAAGGTGGTGGTGCCGGGGGAGGTTTTGGAAAGGGTGGCGGCATTGGTGGTGGAATAGGTAAAGGTGGTAGTGCCGGGGGAGGTTTTGGCAAGGGTGGAGGCCATGGTGGTGGAACTGGAGGTGGCGGTGGTTTTGGCAAGGGTGGAGGCCATGGTATTGGTGGTGGATTTGGGAAAGGTGGCGGAATTGGAAAGGGTGGCGGAATTGGAGGTGGCGGTGGTTTTGGTAAGGGTGGAGGCCATGGTGTTGGTGGTGGATTTGGGAAAGGAGGAGGCATTGGAAAGGGTGGTGGAGTTGGAGGAGGTGCTGGAGGTGGATTTGGAAAAGGTGGAGGTGTTGGTGGAGGAATAGGGAAAGGTGGTGGCATTGGAGGCGGAGCTGGTGGTGAGCTGGTGGAGGAGCTGGAGGAGGCTTTGGTGGTGGAATTGGCAAAGGCGGTGGAATTGGTGGTGGTGGTGGTTTCGGTAAAGGCGGTGGCATTGGAGGAGGTATCGGTAAAGGTGGAGGATTTGGTGGCGGCATTGGAGGTGGAGGTGGCTCCGGAGGCGGATTTGGCAAAGGTTGGTGGTATTGGTGGAGGAGTAGGGGGGCTCTGGTGGAGCGGCGGATTTGGCGGTGGATTTGGAGGAGGAGCCGGCGGAGGAGCTGGGGGAGGTGGGGGTTTTGGCAGTGGAGGTGGTGGTGGAATTGGAGGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

29.41

Weight (kDa)

5.66

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120
malus_domestica	MD13G1217600.v1.1
prunus_persica	Prupe.1G044400_v2.0.a1 Prupe.1G044500_v2.0.a1 Prupe.5G067700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394491
rosa_laevigata	RLG00000009694
rosa_multiflora	Rmu_sc0001819.1_g000002 Rmu_sc0005424.1_g000022 Rmu_sc0013311.1_g000003
rosa_roxburghii	Rroxscaffold_5G00339540
rosa_rugosa	Rorug03G0365600.1
rosa_samantha	Rh4BG050300 Rh4CG056700 Rh4DG049400
rosa_wichuraiana	Rw0G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc16I	TGCGCA	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	921
AccIII	TCCGGA	1 cut(s)	859
AluBI	AGCT	6 cut(s)	143, 271, 698, 709, 721, 965
AluI	AGCT	6 cut(s)	143, 271, 698, 709, 721, 965
Aor13HI	TCCGGA	1 cut(s)	859
AoxI	GGCC	4 cut(s)	418, 466, 556, 1012
ApeKI	GCWGC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	9
AsuC2I	CCSGG	2 cut(s)	334, 394
AsuHPI	GGTGA	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	912
BbvI	GCAGC	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	334, 394
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	136, 199, 358, 837, 922
BlsI	GCNGC	5 cut(s)	137, 200, 359, 838, 923
Bme1390I	CCNGG	2 cut(s)	334, 394
BmiI	GGNNCC	4 cut(s)	288, 331, 858, 952
BmrFI	CCNGG	2 cut(s)	334, 394
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	6 cut(s)	165, 237, 293, 456, 648, 743
BpuMI	CCSGG	2 cut(s)	334, 394
BsaJI	CCNNGG	5 cut(s)	333, 393, 421, 469, 559
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse118I	RCCGGY	1 cut(s)	953
Bse1I	ACTGG	2 cut(s)	130, 439
BseAI	TCCGGA	1 cut(s)	859
BseDI	CCNNGG	5 cut(s)	333, 393, 421, 469, 559
BseNI	ACTGG	2 cut(s)	130, 439
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	965
BshFI	GGCC	4 cut(s)	420, 468, 558, 1014
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	5 cut(s)	290, 333, 393, 860, 954
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	4 cut(s)	420, 468, 558, 1014
Bsp1286I	GDGCHC	2 cut(s)	125, 912
Bsp13I	TCCGGA	1 cut(s)	859
Bsp19I	CCATGG	3 cut(s)	421, 469, 559
BspANI	GGCC	4 cut(s)	420, 468, 558, 1014
BspEI	TCCGGA	1 cut(s)	859
BspLI	GGNNCC	4 cut(s)	288, 331, 858, 952
BspMI	ACCTGC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	921
BsrFI	RCCGGY	1 cut(s)	953
BsrI	ACTGG	2 cut(s)	130, 439
BssAI	RCCGGY	1 cut(s)	953
BssECI	CCNNGG	5 cut(s)	333, 393, 421, 469, 559
BssT1I	CCWWGG	3 cut(s)	421, 469, 559
BstC8I	GCNNGC	1 cut(s)	955
BstDSI	CCRYGG	3 cut(s)	421, 469, 559
BstHHI	GCGC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	204, 239, 302, 690, 863, 872, 930
BstSCI	CCNGG	2 cut(s)	332, 392
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	3 cut(s)	428, 476, 566
BsuRI	GGCC	4 cut(s)	420, 468, 558, 1014
BtgI	CCRYGG	3 cut(s)	421, 469, 559
BtsI	GCAGTG	3 cut(s)	16, 66, 994
BtsIMutI	CAGTG	5 cut(s)	16, 66, 123, 994, 1015
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	955
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	953
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	3 cut(s)	422, 470, 560
EciI	GGCGGA	6 cut(s)	516, 534, 708, 881, 939, 972
Eco130I	CCWWGG	3 cut(s)	421, 469, 559
Eco24I	GRGCYC	1 cut(s)	912
EcoT14I	CCWWGG	3 cut(s)	421, 469, 559
EcoT38I	GRGCYC	1 cut(s)	912
ErhI	CCWWGG	3 cut(s)	421, 469, 559
FaeI	CATG	3 cut(s)	425, 473, 563
FaiI	YATR	3 cut(s)	423, 471, 561
FatI	CATG	3 cut(s)	421, 469, 559
Fnu4HI	GCNGC	5 cut(s)	136, 199, 358, 837, 922
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	5 cut(s)	136, 199, 358, 837, 922
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	5 cut(s)	136, 199, 358, 837, 922
GsaI	CCCAGC	1 cut(s)	969
GsuI	CTGGAG	6 cut(s)	165, 237, 293, 456, 648, 743
HaeIII	GGCC	4 cut(s)	420, 468, 558, 1014
HapII	CCGG	5 cut(s)	290, 333, 393, 860, 954
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	425, 473, 563
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HpaII	CCGG	5 cut(s)	290, 333, 393, 860, 954
HphI	GGTGA	1 cut(s)	716
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	860
HpyCH4V	TGCA	2 cut(s)	45, 59
HpyF10VI	GCNNNNNNNGC	7 cut(s)	204, 239, 302, 690, 863, 872, 930
Hsp92II	CATG	3 cut(s)	425, 473, 563
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	859
KroI	GCCGGC	1 cut(s)	953
KroNI	GCCGGC	1 cut(s)	955
Lsp1109I	GCAGC	1 cut(s)	147
MbiI	CCGCTC	1 cut(s)	921
MhlI	GDGCHC	2 cut(s)	125, 912
MluCI	AATT	5 cut(s)	504, 522, 743, 761, 1005
MmeI	TCCRAC	1 cut(s)	595
MroI	TCCGGA	1 cut(s)	859
MroNI	GCCGGC	1 cut(s)	953
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	5 cut(s)	290, 333, 393, 860, 954
MspR9I	CCNGG	2 cut(s)	334, 394
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	7 cut(s)	204, 239, 302, 690, 863, 872, 930
NaeI	GCCGGC	1 cut(s)	955
NciI	CCSGG	2 cut(s)	334, 394
NcoI	CCATGG	3 cut(s)	421, 469, 559
NgoMIV	GCCGGC	1 cut(s)	953
NlaIII	CATG	3 cut(s)	425, 473, 563
NlaIV	GGNNCC	4 cut(s)	288, 331, 858, 952
NsbI	TGCGCA	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	158
PctI	GAATGC	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	955
PkrI	GCNGC	5 cut(s)	137, 200, 359, 838, 923
PspFI	CCCAGC	1 cut(s)	965
PspN4I	GGNNCC	4 cut(s)	288, 331, 858, 952
RseI	CAYNNNNRTG	1 cut(s)	426
SatI	GCNGC	5 cut(s)	136, 199, 358, 837, 922
ScrFI	CCNGG	2 cut(s)	334, 394
SduI	GDGCHC	2 cut(s)	125, 912
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	5 cut(s)	504, 522, 743, 761, 1005
StyD4I	CCNGG	2 cut(s)	332, 392
StyI	CCWWGG	3 cut(s)	421, 469, 559
TasI	AATT	5 cut(s)	504, 522, 743, 761, 1005
TauI	GCSGC	4 cut(s)	201, 360, 839, 924
TscAI	CASTG	4 cut(s)	16, 66, 130, 994
TseI	GCWGC	1 cut(s)	135
TspRI	CASTG	4 cut(s)	16, 66, 130, 994
XcmI	CCANNNNNNNNNTGG	2 cut(s)	476, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.