RchiOBHm_Chr4g0394491

Glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
10160492 .. 10162369
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36699

Sequence Viewer

Length: 1215 bp
ATGGTGCGCAGTAGGAAATCACTTGCTTTGTTTTCTTTGCTTTGCATTCAGGTTCTTGCAGTGAGTGTTGTTGCGAGGAATGTAGTGAGTGTGAGGAACGATGAGGAGGAAAAGAACTTGGGCACTGGGTTTGGCAGTGGAGCTGGAGGTGGGTTTGGAGGTGGAGCAGGTGGGGGTGGTGGTGGTGGTTTTGGAGGCGGCTCTGGCGGTGGTGCTGGAGGTGGGGCAGGTGGTGGCTTCGGAGGCGGTAGTGGTGGTGGCTTTGGTGGTGGAGCTGGAGGAGGTGGTGGAGCCGGAGGCGGTGGTGGCTTTGGTGGTGGGTCTGGCGGTGGTGGTCATGGGGTCGGAGGTGGAGCTGGTGGTGGTGGAGGATTAGGTGGTGGCCATGGCGTTGGTGGTGGGATTGGCAAAGGTGGAGGCATTGGCGGTGGAATAGGAAAAGGTGGTGGTGCCGGGGGAGGTTTTGGAAAGGGTGGCGGCATTGGTGGTGGAATAGGTAAAGGTGGTGGTGCCGGGGGAGGTTTTGGCAAGGGTGGAGGCCATGGTATTGGTGGCGGAATTGGAGGTGGTGGCGGCTTTGGCAAGGGTGGAGGCCACGGTGTTGGTGGTGGATTTGGTAAAGGTGGTGGAACTGGAGGTGGCGGTGGTTTTGGCAAGGGTGGAGGCCATGGTATTGGTGGTGGATTTGGGAAAGGTGGTGGAATTGGAGGTGGCGGTGGTTTTGGTAAGGGTGGAGGCCATGGTGTTGGTGGTGGATTTGGGAAAGGAGGAGGCATTGGAAAGGGTGGTGGAGTTGGAGGAGGTGCTGGAGGTGGATTTGGAAAAGGTGGAGGTGTTGGTGGAGGAATAGGGAAAGGTGGTGGCATTGGAGGCGGAGCTGGTGGTGGAGCTGGTGGCGGAGTTGGAGGAGGCTTTGGTAAGGGTGGTGGAGTAGGTGGTGGAATTGGTGGTGGTGGTGGTTTCGGTAAAGGCGGTGGCATTGGAGGAGGTATCGGTAAAGGTGGAGGATTTGGTGGTGGCATTGGAGGTGGAGGTGGCTCCGGTGGTGGAATAGGAGGCGGATTTGGCAAAGGTGGTGGTATTGGTGGAGGAGTAGGAGGAGGCTCTGGTGGAGGCGGCGGATTTGGCGGCGGATTCGGAGGAGGAGCCGGCGGAGGAGCTGGGGGAGGTGGGGGTTTTGGCAGTGGAGGTGGTGGTGGAATTGGAGGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

31.07

Weight (kDa)

10.89

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 158, 218
Acc16I TGCGCA 1 cut(s) 8
Acc36I ACCTGC 2 cut(s) 158, 218
AccB1I GGYRCC 2 cut(s) 449, 509
AcoI YGGCCR 1 cut(s) 382
AluBI AGCT 6 cut(s) 143, 275, 356, 878, 890, 1160
AluI AGCT 6 cut(s) 143, 275, 356, 878, 890, 1160
AoxI GGCC 6 cut(s) 382, 538, 592, 664, 736, 1207
AspLEI GCGC 1 cut(s) 9
AsuC2I CCSGG 2 cut(s) 454, 514
BaeGI GKGCMC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 384
BanI GGYRCC 2 cut(s) 449, 509
BcnI CCSGG 2 cut(s) 454, 514
BfuAI ACCTGC 2 cut(s) 158, 218
BisI GCNGC 5 cut(s) 199, 478, 574, 1117, 1129
BlsI GCNGC 5 cut(s) 200, 479, 575, 1118, 1130
Bme1390I CCNGG 2 cut(s) 454, 514
BmiI GGNNCC 5 cut(s) 292, 451, 511, 1039, 1147
BmrFI CCNGG 2 cut(s) 454, 514
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpmI CTGGAG 5 cut(s) 165, 237, 297, 654, 828
BpuMI CCSGG 2 cut(s) 454, 514
BsaJI CCNNGG 7 cut(s) 385, 453, 513, 541, 595, 667, 739
BsaWI WCCGGW 1 cut(s) 1040
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 2 cut(s) 130, 637
BseDI CCNNGG 7 cut(s) 385, 453, 513, 541, 595, 667, 739
BseNI ACTGG 2 cut(s) 130, 637
BseSI GKGCMC 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 1160
BshFI GGCC 6 cut(s) 384, 540, 594, 666, 738, 1209
BshNI GGYRCC 2 cut(s) 449, 509
BsiSI CCGG 5 cut(s) 294, 453, 513, 1041, 1149
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 6 cut(s) 384, 540, 594, 666, 738, 1209
Bsp1286I GDGCHC 1 cut(s) 125
Bsp19I CCATGG 4 cut(s) 385, 541, 667, 739
BspANI GGCC 6 cut(s) 384, 540, 594, 666, 738, 1209
BspLI GGNNCC 5 cut(s) 292, 451, 511, 1039, 1147
BspMI ACCTGC 2 cut(s) 158, 218
BspT107I GGYRCC 2 cut(s) 449, 509
BsrFI RCCGGY 1 cut(s) 1148
BsrI ACTGG 2 cut(s) 130, 637
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 7 cut(s) 385, 453, 513, 541, 595, 667, 739
BssT1I CCWWGG 4 cut(s) 385, 541, 667, 739
Bst4CI ACNGT 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 1150
BstDSI CCRYGG 5 cut(s) 385, 541, 595, 667, 739
BstHHI GCGC 1 cut(s) 9
BstMWI GCNNNNNNNGC 7 cut(s) 204, 243, 306, 579, 870, 1065, 1125
BstSCI CCNGG 2 cut(s) 452, 512
BstSLI GKGCMC 1 cut(s) 125
BstXI CCANNNNNNTGG 5 cut(s) 392, 548, 602, 674, 746
BsuRI GGCC 6 cut(s) 384, 540, 594, 666, 738, 1209
BtgI CCRYGG 5 cut(s) 385, 541, 595, 667, 739
BtsI GCAGTG 3 cut(s) 66, 142, 1189
BtsIMutI CAGTG 5 cut(s) 66, 123, 142, 1189, 1210
BveI ACCTGC 2 cut(s) 158, 218
Cac8I GCNNGC 1 cut(s) 1150
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 1148
CspCI CAANNNNNGTGG 2 cut(s) 1057, 1092
CviAII CATG 5 cut(s) 338, 386, 542, 668, 740
EaeI YGGCCR 1 cut(s) 382
EciI GGCGGA 7 cut(s) 570, 888, 912, 1074, 1134, 1146, 1167
Eco130I CCWWGG 4 cut(s) 385, 541, 667, 739
EcoT14I CCWWGG 4 cut(s) 385, 541, 667, 739
ErhI CCWWGG 4 cut(s) 385, 541, 667, 739
FaeI CATG 5 cut(s) 341, 389, 545, 671, 743
FaiI YATR 5 cut(s) 339, 387, 543, 669, 741
FatI CATG 5 cut(s) 337, 385, 541, 667, 739
Fnu4HI GCNGC 5 cut(s) 199, 478, 574, 1117, 1129
Fsp4HI GCNGC 5 cut(s) 199, 478, 574, 1117, 1129
FspI TGCGCA 1 cut(s) 8
GlaI GCGC 1 cut(s) 8
GluI GCNGC 5 cut(s) 199, 478, 574, 1117, 1129
GsaI CCCAGC 1 cut(s) 1164
GsuI CTGGAG 5 cut(s) 165, 237, 297, 654, 828
HaeIII GGCC 6 cut(s) 384, 540, 594, 666, 738, 1209
HapII CCGG 5 cut(s) 294, 453, 513, 1041, 1149
HhaI GCGC 1 cut(s) 9
Hin1II CATG 5 cut(s) 341, 389, 545, 671, 743
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 1 cut(s) 1134
HpaII CCGG 5 cut(s) 294, 453, 513, 1041, 1149
Hpy188I TCNGA 3 cut(s) 242, 347, 1139
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 2 cut(s) 45, 59
HpyF10VI GCNNNNNNNGC 7 cut(s) 204, 243, 306, 579, 870, 1065, 1125
Hsp92II CATG 5 cut(s) 341, 389, 545, 671, 743
HspAI GCGC 1 cut(s) 7
KroI GCCGGC 1 cut(s) 1148
KroNI GCCGGC 1 cut(s) 1150
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 4 cut(s) 558, 702, 942, 1200
MluNI TGGCCA 1 cut(s) 384
MmeI TCCRAC 3 cut(s) 325, 775, 883
Mox20I TGGCCA 1 cut(s) 384
MroNI GCCGGC 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 384
MspI CCGG 5 cut(s) 294, 453, 513, 1041, 1149
MspR9I CCNGG 2 cut(s) 454, 514
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 7 cut(s) 204, 243, 306, 579, 870, 1065, 1125
NaeI GCCGGC 1 cut(s) 1150
NciI CCSGG 2 cut(s) 454, 514
NcoI CCATGG 4 cut(s) 385, 541, 667, 739
NgoMIV GCCGGC 1 cut(s) 1148
NlaIII CATG 5 cut(s) 341, 389, 545, 671, 743
NlaIV GGNNCC 5 cut(s) 292, 451, 511, 1039, 1147
NsbI TGCGCA 1 cut(s) 8
PaqCI CACCTGC 2 cut(s) 158, 218
PctI GAATGC 1 cut(s) 45
PdiI GCCGGC 1 cut(s) 1150
PfeI GAWTC 1 cut(s) 1134
PkrI GCNGC 5 cut(s) 200, 479, 575, 1118, 1130
PspFI CCCAGC 1 cut(s) 1160
PspN4I GGNNCC 5 cut(s) 292, 451, 511, 1039, 1147
SatI GCNGC 5 cut(s) 199, 478, 574, 1117, 1129
ScrFI CCNGG 2 cut(s) 454, 514
SduI GDGCHC 1 cut(s) 125
Sse9I AATT 4 cut(s) 558, 702, 942, 1200
StyD4I CCNGG 2 cut(s) 452, 512
StyI CCWWGG 4 cut(s) 385, 541, 667, 739
TaaI ACNGT 1 cut(s) 599
TasI AATT 4 cut(s) 558, 702, 942, 1200
TauI GCSGC 5 cut(s) 201, 480, 576, 1119, 1131
TfiI GAWTC 1 cut(s) 1134
TscAI CASTG 4 cut(s) 66, 130, 142, 1189
TspRI CASTG 4 cut(s) 66, 130, 142, 1189
XcmI CCANNNNNNNNNTGG 5 cut(s) 392, 548, 602, 674, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.