Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013311.1

Orthogroup ID

OG0008858

Physical Location & Seq

Genomic Coordinates Forward (+)

16295 .. 17548

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013311.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggtgcgcagtaggaaatcacttgctttgttttctttgctttgcattcaggttcttgcagtgagtgttgttgcgaggaatgtagtgagtgtgaggaacgatgaggaggaaaagaacttgggcactgggtttggcagcggagctggaggtgggtttggaggtggagcaggtgggggtggtggtggtggttttggaggcggctctggcggtggtgctggaggtggggcaggtggtggcttcggaggcggtagtggtggtggctttggtggtggagctggaggagggggtggagccggaggcggtggtggctttggtggtgggtctggcggtggtggtcatggggtcggaggtggagctggtggtggtggaggattaggtggtggccatggcgttggtggtgggattggcaaaggtggaggcattggcggtggaataggtaaaggtggtggtgccgggggaggttttggaaagggtggcggcattggtggtggaataggtaaaggtggtagtgccggaggaggttttggcaagggtggaggccatggcattggtggtggaattggaggtggtggcggctctggcaagggtggaggccacggtgttggtggtggatttggtaaaggcggtggaactggaggtggcggtggttttggcaagggtggaggccatggtattggtggtggatttgggaaaggtggtggaattggaaagggtggcggaattggaggtggcggtggttttggtaagggtggaggccatggtgttggtggtggatttgggaaaggaggaggcattggaaagggtggtggagttggaggaggtgctggaggtggatttggaaaaggtggaggtgttggtggaggaatagggaaaggtggtggcattggaggcggagctggtggtggagctggtggcggagctggaggaggctttggtaagggtggtggagtaggtggtggaattggcaaaggcggtggaattggtggtggtggtggtttcggtaaaggcggtggcattggaggaggtatcggtaaaggtggaggatttggtggcggcattggaggtggaggtggctcctccggtggtggaataggaggcggatttggcaaaggtggtggtattggtggaggagtaggaggaggctctggtggaggcggcggatttggcggtggatttggaggaggagccggcggaggagctgggggaggtgggggttttggcagtggaggtggtggtggaattggaggccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

32.04

Weight (kDa)

10.93

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120 FvH4_4g04120
malus_domestica	MD13G1217600.v1.1
prunus_persica	Prupe.1G044400_v2.0.a1 Prupe.1G044500_v2.0.a1 Prupe.5G067700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394491
rosa_laevigata	RLG00000009694
rosa_multiflora	Rmu_sc0001819.1_g000002 Rmu_sc0005424.1_g000022 Rmu_sc0013311.1_g000003
rosa_roxburghii	Rroxscaffold_5G00339540
rosa_rugosa	Rorug03G0365600.1
rosa_samantha	Rh4BG050300 Rh4CG056700 Rh4DG049400
rosa_wichuraiana	Rw0G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	158, 218
Acc16I	TGCGCA	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	158, 218
AccB1I	GGYRCC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	382
AluBI	AGCT	7 cut(s)	143, 275, 356, 896, 908, 920, 1199
AluI	AGCT	7 cut(s)	143, 275, 356, 896, 908, 920, 1199
AoxI	GGCC	6 cut(s)	382, 538, 592, 664, 754, 1246
ApeKI	GCWGC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	454
BfuAI	ACCTGC	2 cut(s)	158, 218
BisI	GCNGC	6 cut(s)	136, 199, 478, 574, 1054, 1156
BlsI	GCNGC	6 cut(s)	137, 200, 479, 575, 1055, 1157
Bme1390I	CCNGG	1 cut(s)	454
BmiI	GGNNCC	4 cut(s)	292, 451, 1075, 1186
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	6 cut(s)	165, 237, 297, 654, 846, 942
BpuMI	CCSGG	1 cut(s)	454
BsaJI	CCNNGG	6 cut(s)	385, 453, 541, 595, 667, 757
BsaWI	WCCGGW	1 cut(s)	1079
Bse118I	RCCGGY	1 cut(s)	1187
Bse1I	ACTGG	2 cut(s)	130, 637
BseDI	CCNNGG	6 cut(s)	385, 453, 541, 595, 667, 757
BseNI	ACTGG	2 cut(s)	130, 637
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	1199
BshFI	GGCC	6 cut(s)	384, 540, 594, 666, 756, 1248
BshNI	GGYRCC	1 cut(s)	449
BsiSI	CCGG	5 cut(s)	294, 453, 513, 1080, 1188
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	6 cut(s)	384, 540, 594, 666, 756, 1248
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp19I	CCATGG	4 cut(s)	385, 541, 667, 757
BspANI	GGCC	6 cut(s)	384, 540, 594, 666, 756, 1248
BspLI	GGNNCC	4 cut(s)	292, 451, 1075, 1186
BspMI	ACCTGC	2 cut(s)	158, 218
BspT107I	GGYRCC	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	1187
BsrI	ACTGG	2 cut(s)	130, 637
BssAI	RCCGGY	1 cut(s)	1187
BssECI	CCNNGG	6 cut(s)	385, 453, 541, 595, 667, 757
BssT1I	CCWWGG	4 cut(s)	385, 541, 667, 757
Bst4CI	ACNGT	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	1189
BstDSI	CCRYGG	5 cut(s)	385, 541, 595, 667, 757
BstHHI	GCGC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	204, 243, 306, 579, 888, 1104, 1164
BstSCI	CCNGG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	5 cut(s)	392, 548, 602, 674, 764
BsuRI	GGCC	6 cut(s)	384, 540, 594, 666, 756, 1248
BtgI	CCRYGG	5 cut(s)	385, 541, 595, 667, 757
BtsI	GCAGTG	2 cut(s)	66, 1228
BtsIMutI	CAGTG	4 cut(s)	66, 123, 1228, 1249
BveI	ACCTGC	2 cut(s)	158, 218
Cac8I	GCNNGC	1 cut(s)	1189
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	1187
CspCI	CAANNNNNGTGG	4 cut(s)	955, 990, 1096, 1131
CviAII	CATG	5 cut(s)	338, 386, 542, 668, 758
EaeI	YGGCCR	1 cut(s)	382
EciI	GGCGGA	6 cut(s)	732, 906, 930, 1113, 1173, 1206
Eco130I	CCWWGG	4 cut(s)	385, 541, 667, 757
EcoT14I	CCWWGG	4 cut(s)	385, 541, 667, 757
ErhI	CCWWGG	4 cut(s)	385, 541, 667, 757
FaeI	CATG	5 cut(s)	341, 389, 545, 671, 761
FaiI	YATR	5 cut(s)	339, 387, 543, 669, 759
FatI	CATG	5 cut(s)	337, 385, 541, 667, 757
Fnu4HI	GCNGC	6 cut(s)	136, 199, 478, 574, 1054, 1156
Fsp4HI	GCNGC	6 cut(s)	136, 199, 478, 574, 1054, 1156
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	6 cut(s)	136, 199, 478, 574, 1054, 1156
GsaI	CCCAGC	1 cut(s)	1203
GsuI	CTGGAG	6 cut(s)	165, 237, 297, 654, 846, 942
HaeIII	GGCC	6 cut(s)	384, 540, 594, 666, 756, 1248
HapII	CCGG	5 cut(s)	294, 453, 513, 1080, 1188
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	341, 389, 545, 671, 761
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HpaII	CCGG	5 cut(s)	294, 453, 513, 1080, 1188
Hpy188I	TCNGA	2 cut(s)	242, 347
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	2 cut(s)	45, 59
HpyF10VI	GCNNNNNNNGC	7 cut(s)	204, 243, 306, 579, 888, 1104, 1164
Hsp92II	CATG	5 cut(s)	341, 389, 545, 671, 761
HspAI	GCGC	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	1187
KroNI	GCCGGC	1 cut(s)	1189
Lsp1109I	GCAGC	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	6 cut(s)	558, 702, 720, 960, 978, 1239
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	325, 793
Mox20I	TGGCCA	1 cut(s)	384
MroNI	GCCGGC	1 cut(s)	1187
MscI	TGGCCA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	5 cut(s)	294, 453, 513, 1080, 1188
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	7 cut(s)	204, 243, 306, 579, 888, 1104, 1164
NaeI	GCCGGC	1 cut(s)	1189
NciI	CCSGG	1 cut(s)	454
NcoI	CCATGG	4 cut(s)	385, 541, 667, 757
NgoMIV	GCCGGC	1 cut(s)	1187
NlaIII	CATG	5 cut(s)	341, 389, 545, 671, 761
NlaIV	GGNNCC	4 cut(s)	292, 451, 1075, 1186
NsbI	TGCGCA	1 cut(s)	8
PaqCI	CACCTGC	2 cut(s)	158, 218
PctI	GAATGC	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	1189
PkrI	GCNGC	6 cut(s)	137, 200, 479, 575, 1055, 1157
PspFI	CCCAGC	1 cut(s)	1199
PspN4I	GGNNCC	4 cut(s)	292, 451, 1075, 1186
SatI	GCNGC	6 cut(s)	136, 199, 478, 574, 1054, 1156
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	125
Sse9I	AATT	6 cut(s)	558, 702, 720, 960, 978, 1239
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	4 cut(s)	385, 541, 667, 757
TaaI	ACNGT	1 cut(s)	599
TasI	AATT	6 cut(s)	558, 702, 720, 960, 978, 1239
TauI	GCSGC	5 cut(s)	201, 480, 576, 1056, 1158
TscAI	CASTG	3 cut(s)	66, 130, 1228
TseI	GCWGC	1 cut(s)	135
TspRI	CASTG	3 cut(s)	66, 130, 1228
XcmI	CCANNNNNNNNNTGG	5 cut(s)	392, 548, 602, 674, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.