Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012055

Physical Location & Seq

Genomic Coordinates Forward (+)

5024119 .. 5028022

Gene Structure 3904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATGCAATTTGCTCCAAGTGAGGGTGAAACTGCTTTGTCCGTCGTTGGTCCAAGGCCAATGGAGTTGTCTACGCATAGTGCTCGCCCAGCACCTGGGCCAAATGGAAAACAAAGGACTTCCAGTTTGGAATCACCAATCATGTTGTTGACAGGTCATCAGAGTGCTATATACACAATGAAATTTAATCCTGCTGGAACAGTTGTTGCCTCTGGGTCTCATGACAAAGAAATTTTCTTATGGAATGTTCATGGGGAATGCAAGAACTTTATGGTTCTGAAGGGGCACAAGAATGCTGTATTGGATCTTCACTGGACAACTGATGGGTCTCAGATAATATCAGCAAGTCCAGACAAGACTGTGGGGGCATGGGATGTTGAAACAGGAAAAAGAATAAAAAAGATGGCAGAACACTCATCATTTGTGAATTCTTGCCATCCTGCTCGAAGGGGACCACCTCTTATTGTCAGTGGATCTGATGATGGAACTGCCAAACTATGGGATATGCGTCTGAGGGGTGCCATCCAAACATTTCCTGATAAATATCAAATTACAGCTGTCAGCTTCTCTGATGCATCAGATAAAATCTTTACCGGAGGGATTGACAATGATATTAAAGTTTGGGATTTGCGCAAGGCTGAAGTAATGATGACGCTTCAAGGCCATCAAGATATGATAACAGGTATGTCATTGAGTCCTGATGGCTCTTATCTTCTGACTAATGGAATGGACTGCAAGCTCTGCATTTGGGATATGCGCCCGTATGCACCACAGAATCGTTGTGTGAAGATAATGGAAGGGCACCAGCACAATTTTGAAAAGAACTTGTTGAAATGTGGCTGGTCCCCTGATGGAAGCAAGGTCACGGCTGGAAGTTCTGATCGGATGGTTTACGTTTGGGATACTACTTCTCGACGCATCTTGTATATGCTTCCTGGCCACACCGGATCTGTCAATGAGTCTGTATTCCATCCCAATGAACCCATTATTGGATCTTGCGGTAGTGATAAACAGATCTATCTGGGGGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

345

Amino Acids

37.87

Weight (kDa)

6.89

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43770
fragaria_vesca	FvH4_4g10290 FvH4_4g10290 FvH4_4g10290 FvH4_4g10290 FvH4_4g10290
malus_domestica	MD16G1243600.v1.1
prunus_persica	Prupe.1G071000_v2.0.a1
pyrus_communis	pycom16g20470
rosa_chinensis	RchiOBHm_Chr4g0405641
rosa_laevigata	RLG00000008830
rosa_multiflora	Rmu_sc0001200.1_g000049
rosa_roxburghii	Rroxscaffold_5G00350120
rosa_rugosa	Rorug04G0061600
rosa_samantha	Rh4AG133000 Rh4BG128000 Rh4CG140700 Rh4DG127400
rosa_wichuraiana	Rw4G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	632
AccB1I	GGYRCC	2 cut(s)	518, 801
AccB7I	CCANNNNNTGG	2 cut(s)	95, 498
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	1 cut(s)	999
AclWI	GGATC	4 cut(s)	312, 481, 955, 1000
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	3 cut(s)	182, 231, 427
AcuI	CTGAAG	2 cut(s)	299, 660
AfiI	CCNNNNNNNGG	4 cut(s)	23, 95, 498, 989
AgsI	TTSAA	4 cut(s)	380, 659, 818, 832
AjnI	CCWGG	2 cut(s)	94, 934
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 316, 972, 1004
AluBI	AGCT	3 cut(s)	557, 564, 739
AluI	AGCT	3 cut(s)	557, 564, 739
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	222, 333
AlwI	GGATC	4 cut(s)	312, 481, 955, 1000
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	4 cut(s)	56, 98, 661, 937
ApoI	RAATTY	3 cut(s)	182, 231, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AspLEI	GCGC	2 cut(s)	633, 759
AspS9I	GGNCC	4 cut(s)	50, 98, 452, 843
AsuHPI	GGTGA	2 cut(s)	38, 126
AvaII	GGWCC	3 cut(s)	50, 452, 843
BaeGI	GKGCMC	2 cut(s)	288, 804
BalI	TGGCCA	1 cut(s)	939
BanI	GGYRCC	2 cut(s)	518, 801
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
Bbv12I	GWGCWC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	882
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	2 cut(s)	96, 936
BciVI	GTATCC	1 cut(s)	895
BcoDI	GTCTC	2 cut(s)	222, 333
BfuI	GTATCC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	1014
Bme1390I	CCNGG	2 cut(s)	96, 936
Bme18I	GGWCC	3 cut(s)	50, 452, 843
BmgT120I	GGNCC	4 cut(s)	50, 98, 452, 843
BmiI	GGNNCC	4 cut(s)	453, 520, 803, 845
BmrFI	CCNGG	2 cut(s)	96, 936
BmsI	GCATC	3 cut(s)	562, 584, 927
BsaBI	GATNNNNATC	1 cut(s)	543
BsaI	GGTCTC	2 cut(s)	222, 333
BsaJI	CCNNGG	2 cut(s)	53, 95
BsaWI	WCCGGW	2 cut(s)	593, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 95, 498, 989
Bse1I	ACTGG	2 cut(s)	123, 317
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	96, 936
BseDI	CCNNGG	2 cut(s)	53, 95
BseGI	GGATG	5 cut(s)	379, 436, 522, 891, 970
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	4 cut(s)	23, 95, 498, 989
BseMII	CTCAG	2 cut(s)	344, 503
BseNI	ACTGG	2 cut(s)	123, 317
BseSI	GKGCMC	2 cut(s)	288, 804
BseYI	CCCAGC	1 cut(s)	88
BshFI	GGCC	4 cut(s)	58, 100, 663, 939
BshNI	GGYRCC	2 cut(s)	518, 801
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	594, 945
BslFI	GGGAC	2 cut(s)	465, 829
BslI	CCNNNNNNNGG	4 cut(s)	23, 95, 498, 989
BsmAI	GTCTC	2 cut(s)	222, 333
BsmFI	GGGAC	2 cut(s)	465, 829
BsmI	GAATGC	2 cut(s)	263, 298
BsnI	GGCC	4 cut(s)	58, 100, 663, 939
Bso31I	GGTCTC	2 cut(s)	222, 333
Bsp1286I	GDGCHC	3 cut(s)	85, 288, 804
Bsp143I	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
BspACI	CCGC	1 cut(s)	999
BspANI	GGCC	4 cut(s)	58, 100, 663, 939
BspCNI	CTCAG	2 cut(s)	343, 504
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	453, 520, 803, 845
BspPI	GGATC	4 cut(s)	312, 481, 955, 1000
BspT107I	GGYRCC	2 cut(s)	518, 801
BspTNI	GGTCTC	2 cut(s)	222, 333
BsrI	ACTGG	2 cut(s)	123, 317
BssECI	CCNNGG	2 cut(s)	53, 95
BssMI	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	96, 936
Bst4CI	ACNGT	2 cut(s)	202, 361
BstAPI	GCANNNNNTGC	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	85, 737
BstDEI	CTNAG	2 cut(s)	330, 512
BstF5I	GGATG	5 cut(s)	379, 436, 522, 891, 970
BstHHI	GCGC	2 cut(s)	633, 759
BstKTI	GATC	6 cut(s)	307, 476, 883, 950, 995, 1017
BstMAI	GTCTC	2 cut(s)	222, 333
BstMBI	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 741
BstNI	CCWGG	2 cut(s)	96, 936
BstSCI	CCNGG	2 cut(s)	94, 934
BstSLI	GKGCMC	2 cut(s)	288, 804
BstX2I	RGATCY	5 cut(s)	304, 473, 947, 992, 1014
BstYI	RGATCY	5 cut(s)	304, 473, 947, 992, 1014
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	4 cut(s)	58, 100, 663, 939
BtsCI	GGATG	5 cut(s)	379, 436, 522, 891, 970
BtsIMutI	CAGTG	2 cut(s)	310, 475
Cac8I	GCNNGC	2 cut(s)	85, 737
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	633, 759
Cfr13I	GGNCC	4 cut(s)	50, 98, 452, 843
CseI	GACGC	3 cut(s)	497, 661, 924
CviAII	CATG	4 cut(s)	142, 221, 251, 369
DdeI	CTNAG	2 cut(s)	330, 512
DpnI	GATC	6 cut(s)	306, 475, 882, 949, 994, 1016
DpnII	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
EaeI	YGGCCR	1 cut(s)	937
Eco130I	CCWWGG	1 cut(s)	53
Eco31I	GGTCTC	2 cut(s)	222, 333
Eco47I	GGWCC	3 cut(s)	50, 452, 843
Eco57I	CTGAAG	2 cut(s)	299, 660
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	94, 934
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	145, 224, 254, 372
FaqI	GGGAC	2 cut(s)	465, 829
FatI	CATG	4 cut(s)	141, 220, 250, 368
FblI	GTMKAC	1 cut(s)	71
FokI	GGATG	5 cut(s)	386, 423, 509, 898, 957
FspI	TGCGCA	1 cut(s)	632
GlaI	GCGC	2 cut(s)	632, 758
GsaI	CCCAGC	1 cut(s)	92
HaeIII	GGCC	4 cut(s)	58, 100, 663, 939
HapII	CCGG	2 cut(s)	594, 945
HgaI	GACGC	3 cut(s)	497, 661, 924
HhaI	GCGC	2 cut(s)	633, 759
Hin1II	CATG	4 cut(s)	145, 224, 254, 372
Hin6I	GCGC	2 cut(s)	631, 757
HinP1I	GCGC	2 cut(s)	631, 757
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	4 cut(s)	131, 694, 775, 959
HpaII	CCGG	2 cut(s)	594, 945
HphI	GGTGA	2 cut(s)	38, 126
Hpy166II	GTNNAC	3 cut(s)	72, 150, 892
Hpy188III	TCNNGA	6 cut(s)	221, 350, 536, 668, 698, 912
Hpy8I	GTNNAC	3 cut(s)	72, 150, 892
Hpy99I	CGWCG	2 cut(s)	47, 918
HpyAV	CCTTC	3 cut(s)	274, 441, 791
HpyCH4III	ACNGT	2 cut(s)	202, 361
HpyCH4IV	ACGT	1 cut(s)	894
HpyCH4V	TGCA	6 cut(s)	7, 261, 575, 735, 744, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 741
HpyF3I	CTNAG	2 cut(s)	330, 512
HpySE526I	ACGT	1 cut(s)	894
Hsp92II	CATG	4 cut(s)	145, 224, 254, 372
HspAI	GCGC	2 cut(s)	631, 757
Kzo9I	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
LmnI	GCTCC	1 cut(s)	19
LweI	GCATC	3 cut(s)	562, 584, 927
MaeII	ACGT	1 cut(s)	894
MaeIII	GTNAC	1 cut(s)	862
MalI	GATC	6 cut(s)	306, 475, 882, 949, 994, 1016
MboI	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
MboII	GAAGA	3 cut(s)	299, 704, 799
MflI	RGATCY	5 cut(s)	304, 473, 947, 992, 1014
MhlI	GDGCHC	3 cut(s)	85, 288, 804
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	6 cut(s)	8, 182, 231, 427, 549, 811
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	2 cut(s)	703, 968
MnlI	CCTC	5 cut(s)	16, 220, 468, 507, 590
Mox20I	TGGCCA	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	2 cut(s)	186, 615
MslI	CAYNNNNRTG	3 cut(s)	162, 291, 975
Msp20I	TGGCCA	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	594, 945
MspR9I	CCNGG	2 cut(s)	96, 936
Mva1269I	GAATGC	2 cut(s)	263, 298
MvaI	CCWGG	2 cut(s)	96, 936
MwoI	GCNNNNNNNGC	2 cut(s)	89, 741
NdeII	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
NlaIII	CATG	4 cut(s)	145, 224, 254, 372
NlaIV	GGNNCC	4 cut(s)	453, 520, 803, 845
NmuCI	GTSAC	1 cut(s)	862
NsbI	TGCGCA	1 cut(s)	632
NsiI	ATGCAT	1 cut(s)	577
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	2 cut(s)	263, 298
PfeI	GAWTC	2 cut(s)	131, 775
PflMI	CCANNNNNTGG	2 cut(s)	95, 498
PleI	GAGTC	2 cut(s)	702, 967
PpsI	GAGTC	2 cut(s)	702, 967
Psp6I	CCWGG	2 cut(s)	94, 934
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	94, 934
PspN4I	GGNNCC	4 cut(s)	453, 520, 803, 845
PspPI	GGNCC	4 cut(s)	50, 98, 452, 843
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	5 cut(s)	304, 473, 947, 992, 1014
PvuII	CAGCTG	1 cut(s)	557
RseI	CAYNNNNRTG	3 cut(s)	162, 291, 975
SaqAI	TTAA	2 cut(s)	186, 615
Sau3AI	GATC	6 cut(s)	304, 473, 880, 947, 992, 1014
Sau96I	GGNCC	4 cut(s)	50, 98, 452, 843
SchI	GAGTC	2 cut(s)	703, 968
ScrFI	CCNGG	2 cut(s)	96, 936
SduI	GDGCHC	3 cut(s)	85, 288, 804
SetI	ASST	9 cut(s)	97, 157, 460, 559, 566, 685, 741, 864, 897
SfaNI	GCATC	3 cut(s)	562, 584, 927
SinI	GGWCC	3 cut(s)	50, 452, 843
SmiMI	CAYNNNNRTG	3 cut(s)	162, 291, 975
Sse9I	AATT	6 cut(s)	8, 182, 231, 427, 549, 811
SsiI	CCGC	1 cut(s)	999
StyD4I	CCNGG	2 cut(s)	94, 934
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	202, 361
TaiI	ACGT	1 cut(s)	897
TaqI	TCGA	2 cut(s)	445, 913
TasI	AATT	6 cut(s)	8, 182, 231, 427, 549, 811
TfiI	GAWTC	2 cut(s)	131, 775
Tru1I	TTAA	2 cut(s)	186, 615
Tru9I	TTAA	2 cut(s)	186, 615
TscAI	CASTG	2 cut(s)	317, 475
TseFI	GTSAC	1 cut(s)	862
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	3 cut(s)	194, 239, 993
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	317, 475
Van91I	CCANNNNNTGG	2 cut(s)	95, 498
VpaK11BI	GGWCC	3 cut(s)	50, 452, 843
XapI	RAATTY	3 cut(s)	182, 231, 427
XmiI	GTMKAC	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.