Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001200.1

Orthogroup ID

OG0012055

Physical Location & Seq

Genomic Coordinates Reverse (-)

288073 .. 291304

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001200.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgagcagtggcgatgtcaccaacaataatgacgtaatcgctgaacgcgatttatatagtttcacaacacatgagagctcgattcgcaggaagaagaagcctctagggttttcgagaaaagcactaccaggattggaactcagtagaaaaaaagtgttttccattcaagcaccaacagaatcaatgatgcagtttgctccaagtgagggtgaaaatgctttgtctgtagttggtcccaggccaatggatttgtctacatataatgctcgccctgcatctgggcctaatggaaaacaaaggacgtcaagtttggaggcaccaatcatgctgctgactggtcatcaaagtgctatatacacaatgaaatttaaccctaccggaacagtcatagcatcggggtctcacgacaaggaaattttcttatggaatgttcatggggaatgcaaaaacttcatggttttaaaggggcataagaatgctgtgttggatcttcactggacaactgatgggtctcagatagtatcagccagtccagacaaaactgtgggggcatgggatgttgagacgggaaaaagaattaaaaagatggcagaacactcttcatttgtgaattcttgtcatcctgctcggagaggaccgcctcttgttgtcagtggatctgatgatggaactgccaaactatgggatatgcgtgtgaggggtgccatccaaacatatcctgataaataccaaatcacagcagtcagcttctcggatgcatcagataaaatctttacaggaggtattgataatgatattaaggtttgggacttgcgcaaggctgaagtactgatgacacttcaaggacatcaagatatgataacaggtatgtcattgagtcctgatggctcttatcttctgactaatggaatggactgcaaactctgcatttgggatatgcgcccgtatgcaccacaaaatcgttgtgtaaagataatggaagggcaccaacacaactttgaaaagaacttgttgaaatgtagctggtcacctgatggaagcaaggtcacggcgggcagttctgataggatggtctacatatgggatactacttctcgacgcatcttgtttatgctgccgggccacactggatctgtcaatgagtctgtcttccaccccaacgagcccattattggatctggcagtagtgataagcagatatatctgggggaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

405

Amino Acids

44.73

Weight (kDa)

8.4

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43770
fragaria_vesca	FvH4_4g10290 FvH4_4g10290 FvH4_4g10290 FvH4_4g10290 FvH4_4g10290
malus_domestica	MD16G1243600.v1.1
prunus_persica	Prupe.1G071000_v2.0.a1
pyrus_communis	pycom16g20470
rosa_chinensis	RchiOBHm_Chr4g0405641
rosa_laevigata	RLG00000008830
rosa_multiflora	Rmu_sc0001200.1_g000049
rosa_roxburghii	Rroxscaffold_5G00350120
rosa_rugosa	Rorug04G0061600
rosa_samantha	Rh4AG133000 Rh4BG128000 Rh4CG140700 Rh4DG127400
rosa_wichuraiana	Rw4G010780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
Acc16I	TGCGCA	1 cut(s)	815
AccB1I	GGYRCC	3 cut(s)	316, 701, 984
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccI	GTMKAC	2 cut(s)	254, 1074
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	638, 1052
AclWI	GGATC	4 cut(s)	495, 664, 1138, 1183
AcsI	RAATTY	3 cut(s)	365, 414, 610
AcuI	CTGAAG	1 cut(s)	843
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	4 cut(s)	206, 278, 681, 1172
AgsI	TTSAA	4 cut(s)	167, 842, 1001, 1015
AjnI	CCWGG	2 cut(s)	127, 236
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	3 cut(s)	78, 747, 1023
AluI	AGCT	3 cut(s)	78, 747, 1023
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	405, 516, 557
AlwI	GGATC	4 cut(s)	495, 664, 1138, 1183
AoxI	GGCC	3 cut(s)	239, 281, 1120
ApeKI	GCWGC	2 cut(s)	328, 1114
ApoI	RAATTY	3 cut(s)	365, 414, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AspLEI	GCGC	2 cut(s)	816, 942
AspS9I	GGNCC	4 cut(s)	233, 281, 635, 1120
AsuC2I	CCSGG	1 cut(s)	1119
AsuHPI	GGTGA	3 cut(s)	10, 221, 1020
AvaII	GGWCC	2 cut(s)	233, 635
BaeGI	GKGCMC	1 cut(s)	987
BanI	GGYRCC	3 cut(s)	316, 701, 984
BanII	GRGCYC	2 cut(s)	80, 1167
BbsI	GAAGAC	1 cut(s)	1141
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	315, 1101
BccI	CCATC	7 cut(s)	500, 580, 659, 713, 878, 1028, 1063
BceAI	ACGGC	1 cut(s)	1065
BciT130I	CCWGG	2 cut(s)	129, 238
BciVI	GTATCC	1 cut(s)	1078
BcnI	CCSGG	1 cut(s)	1119
BcoDI	GTCTC	3 cut(s)	405, 516, 557
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	1078
BisI	GCNGC	2 cut(s)	329, 1115
BlsI	GCNGC	2 cut(s)	330, 1116
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	3 cut(s)	129, 238, 1119
Bme18I	GGWCC	2 cut(s)	233, 635
BmgT120I	GGNCC	4 cut(s)	233, 281, 635, 1120
BmiI	GGNNCC	4 cut(s)	235, 318, 703, 986
BmrFI	CCNGG	3 cut(s)	129, 238, 1119
BmsI	GCATC	6 cut(s)	177, 284, 401, 745, 767, 1110
BpiI	GAAGAC	1 cut(s)	1141
BpuMI	CCSGG	1 cut(s)	1119
BsaHI	GRCGYC	1 cut(s)	302
BsaI	GGTCTC	2 cut(s)	405, 516
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 278, 681, 1172
Bse1I	ACTGG	4 cut(s)	340, 500, 528, 1132
BseBI	CCWGG	2 cut(s)	129, 238
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	5 cut(s)	562, 619, 705, 760, 1074
BseLI	CCNNNNNNNGG	4 cut(s)	206, 278, 681, 1172
BseMII	CTCAG	2 cut(s)	154, 527
BseNI	ACTGG	4 cut(s)	340, 500, 528, 1132
BseSI	GKGCMC	1 cut(s)	987
BseXI	GCAGC	2 cut(s)	315, 1101
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	241, 283, 1122
BshNI	GGYRCC	3 cut(s)	316, 701, 984
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	378, 1118
BslFI	GGGAC	2 cut(s)	219, 821
BslI	CCNNNNNNNGG	4 cut(s)	206, 278, 681, 1172
BsmAI	GTCTC	3 cut(s)	405, 516, 557
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	2 cut(s)	219, 821
BsmI	GAATGC	2 cut(s)	446, 481
BsnI	GGCC	3 cut(s)	241, 283, 1122
Bso31I	GGTCTC	2 cut(s)	405, 516
Bsp1286I	GDGCHC	3 cut(s)	80, 987, 1167
Bsp143I	GATC	4 cut(s)	487, 656, 1130, 1175
BspACI	CCGC	2 cut(s)	638, 1052
BspANI	GGCC	3 cut(s)	241, 283, 1122
BspCNI	CTCAG	2 cut(s)	153, 526
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	235, 318, 703, 986
BspPI	GGATC	4 cut(s)	495, 664, 1138, 1183
BspT107I	GGYRCC	3 cut(s)	316, 701, 984
BspTNI	GGTCTC	2 cut(s)	405, 516
BsrI	ACTGG	4 cut(s)	340, 500, 528, 1132
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	4 cut(s)	487, 656, 1130, 1175
BssNI	GRCGYC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	129, 238
Bst4CI	ACNGT	2 cut(s)	385, 544
Bst6I	CTCTTC	1 cut(s)	604
BstACI	GRCGYC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	924
BstC8I	GCNNGC	2 cut(s)	268, 1054
BstDEI	CTNAG	2 cut(s)	140, 513
BstEII	GGTNACC	1 cut(s)	1026
BstF5I	GGATG	5 cut(s)	562, 619, 705, 760, 1074
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	816, 942
BstKTI	GATC	4 cut(s)	490, 659, 1133, 1178
BstMAI	GTCTC	3 cut(s)	405, 516, 557
BstMBI	GATC	4 cut(s)	487, 656, 1130, 1175
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 272, 924
BstNI	CCWGG	2 cut(s)	129, 238
BstPI	GGTNACC	1 cut(s)	1026
BstSCI	CCNGG	3 cut(s)	127, 236, 1117
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	987
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	315, 1101
BstV2I	GAAGAC	1 cut(s)	1141
BstX2I	RGATCY	4 cut(s)	487, 656, 1130, 1175
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	4 cut(s)	487, 656, 1130, 1175
BsuI	GTATCC	1 cut(s)	1078
BsuRI	GGCC	3 cut(s)	241, 283, 1122
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	5 cut(s)	562, 619, 705, 760, 1074
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	4 cut(s)	13, 493, 658, 1125
Cac8I	GCNNGC	2 cut(s)	268, 1054
CfoI	GCGC	2 cut(s)	816, 942
Cfr13I	GGNCC	4 cut(s)	233, 281, 635, 1120
CseI	GACGC	1 cut(s)	1107
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	5 cut(s)	71, 325, 434, 454, 552
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	2 cut(s)	140, 513
DpnI	GATC	4 cut(s)	489, 658, 1132, 1177
DpnII	GATC	4 cut(s)	487, 656, 1130, 1175
DraI	TTTAAA	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	80, 1167
Eco31I	GGTCTC	2 cut(s)	405, 516
Eco47I	GGWCC	2 cut(s)	233, 635
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	843
Eco91I	GGTNACC	1 cut(s)	1026
EcoICRI	GAGCTC	1 cut(s)	78
EcoO65I	GGTNACC	1 cut(s)	1026
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	127, 236
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	2 cut(s)	80, 1167
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	5 cut(s)	74, 328, 437, 457, 555
FaqI	GGGAC	2 cut(s)	219, 821
FatI	CATG	5 cut(s)	70, 324, 433, 453, 551
FauI	CCCGC	1 cut(s)	1045
FauNDI	CATATG	1 cut(s)	1079
FblI	GTMKAC	2 cut(s)	254, 1074
Fnu4HI	GCNGC	2 cut(s)	329, 1115
FokI	GGATG	5 cut(s)	569, 606, 692, 767, 1081
FriOI	GRGCYC	2 cut(s)	80, 1167
Fsp4HI	GCNGC	2 cut(s)	329, 1115
FspBI	CTAG	1 cut(s)	104
FspI	TGCGCA	1 cut(s)	815
GlaI	GCGC	2 cut(s)	815, 941
GluI	GCNGC	2 cut(s)	329, 1115
HaeIII	GGCC	3 cut(s)	241, 283, 1122
HapII	CCGG	2 cut(s)	378, 1118
HgaI	GACGC	1 cut(s)	1107
HhaI	GCGC	2 cut(s)	816, 942
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	74, 328, 437, 457, 555
Hin6I	GCGC	2 cut(s)	814, 940
HinP1I	GCGC	2 cut(s)	814, 940
HinfI	GANTC	4 cut(s)	82, 179, 877, 1142
HpaII	CCGG	2 cut(s)	378, 1118
HphI	GGTGA	3 cut(s)	10, 221, 1020
Hpy166II	GTNNAC	2 cut(s)	255, 1075
Hpy188I	TCNGA	8 cut(s)	516, 630, 661, 754, 763, 900, 1063, 1217
Hpy188III	TCNNGA	7 cut(s)	114, 404, 533, 719, 851, 881, 1095
Hpy8I	GTNNAC	2 cut(s)	255, 1075
Hpy99I	CGWCG	1 cut(s)	1101
HpyAV	CCTTC	1 cut(s)	974
HpyCH4III	ACNGT	2 cut(s)	385, 544
HpyCH4IV	ACGT	2 cut(s)	33, 302
HpyCH4V	TGCA	7 cut(s)	190, 275, 444, 758, 918, 927, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 272, 924
HpyF3I	CTNAG	2 cut(s)	140, 513
HpySE526I	ACGT	2 cut(s)	33, 302
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	74, 328, 437, 457, 555
HspAI	GCGC	2 cut(s)	814, 940
Kzo9I	GATC	4 cut(s)	487, 656, 1130, 1175
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	315, 1101
LweI	GCATC	6 cut(s)	177, 284, 401, 745, 767, 1110
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	2 cut(s)	33, 302
MaeIII	GTNAC	3 cut(s)	16, 1026, 1045
MalI	GATC	4 cut(s)	489, 658, 1132, 1177
MboI	GATC	4 cut(s)	487, 656, 1130, 1175
MboII	GAAGA	6 cut(s)	103, 106, 482, 591, 887, 1141
MflI	RGATCY	4 cut(s)	487, 656, 1130, 1175
MhlI	GDGCHC	3 cut(s)	80, 987, 1167
MluCI	AATT	4 cut(s)	365, 414, 576, 610
MlyI	GAGTC	2 cut(s)	886, 1151
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	111, 199, 307, 626, 651, 690, 773
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	4 cut(s)	369, 461, 579, 798
MslI	CAYNNNNRTG	2 cut(s)	345, 474
MspI	CCGG	2 cut(s)	378, 1118
MspR9I	CCNGG	3 cut(s)	129, 238, 1119
Mva1269I	GAATGC	2 cut(s)	446, 481
MvaI	CCWGG	2 cut(s)	129, 238
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	84, 272, 924
NciI	CCSGG	1 cut(s)	1119
NdeI	CATATG	1 cut(s)	1079
NdeII	GATC	4 cut(s)	487, 656, 1130, 1175
NlaIII	CATG	5 cut(s)	74, 328, 437, 457, 555
NlaIV	GGNNCC	4 cut(s)	235, 318, 703, 986
NmuCI	GTSAC	3 cut(s)	16, 1026, 1045
NsbI	TGCGCA	1 cut(s)	815
NsiI	ATGCAT	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	2 cut(s)	446, 481
PfeI	GAWTC	2 cut(s)	82, 179
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	2 cut(s)	330, 1116
PleI	GAGTC	2 cut(s)	885, 1150
PpsI	GAGTC	2 cut(s)	885, 1150
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	127, 236
PspEI	GGTNACC	1 cut(s)	1026
PspGI	CCWGG	2 cut(s)	127, 236
PspN4I	GGNNCC	4 cut(s)	235, 318, 703, 986
PspPI	GGNCC	4 cut(s)	233, 281, 635, 1120
PsuI	RGATCY	4 cut(s)	487, 656, 1130, 1175
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	2 cut(s)	345, 474
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	369, 461, 579, 798
SatI	GCNGC	2 cut(s)	329, 1115
Sau3AI	GATC	4 cut(s)	487, 656, 1130, 1175
Sau96I	GGNCC	4 cut(s)	233, 281, 635, 1120
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	2 cut(s)	886, 1151
ScrFI	CCNGG	3 cut(s)	129, 238, 1119
SduI	GDGCHC	3 cut(s)	80, 987, 1167
SfaNI	GCATC	6 cut(s)	177, 284, 401, 745, 767, 1110
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	233, 635
SmiMI	CAYNNNNRTG	2 cut(s)	345, 474
Sse9I	AATT	4 cut(s)	365, 414, 576, 610
SsiI	CCGC	2 cut(s)	638, 1052
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	127, 236, 1117
TaaI	ACNGT	2 cut(s)	385, 544
TaiI	ACGT	2 cut(s)	36, 305
TaqI	TCGA	3 cut(s)	80, 113, 1096
TasI	AATT	4 cut(s)	365, 414, 576, 610
TatI	WGTACW	1 cut(s)	826
TfiI	GAWTC	2 cut(s)	82, 179
Tru1I	TTAA	4 cut(s)	369, 461, 579, 798
Tru9I	TTAA	4 cut(s)	369, 461, 579, 798
TscAI	CASTG	4 cut(s)	13, 500, 658, 1132
TseFI	GTSAC	3 cut(s)	16, 1026, 1045
TseI	GCWGC	2 cut(s)	328, 1114
Tsp45I	GTSAC	3 cut(s)	16, 1026, 1045
TspDTI	ATGAA	4 cut(s)	377, 422, 442, 591
TspRI	CASTG	4 cut(s)	13, 500, 658, 1132
Van91I	CCANNNNNTGG	1 cut(s)	681
VpaK11BI	GGWCC	2 cut(s)	233, 635
XapI	RAATTY	3 cut(s)	365, 414, 610
XmiI	GTMKAC	2 cut(s)	254, 1074
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	828
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.